Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003751

Physical Location & Seq

Genomic Coordinates Reverse (-)

48839916 .. 48843046

Gene Structure 3131 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG270000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGCGTATTGGGAGGGAGAATAGACAAGTGATTAAAGGATGGGATGAAGGTATTAAAACAATGAAGAAAGGTGAGAATGCCCTTTTCACCATTCCTCCTGATATGGCTTATGGTGCGTCTGGATCTCCCCCAACCATCCCTCCAAATGCAACGTTGCAGTTCGATGTTGAATTGCTATCGTGGACCAGTGTAAACGACATAACCAAGGATGGTGGAATTATTAAGAAGGTTTTGAAAGAGGGAGAAAAATGGGAGAACCCAAAAGACCTTGATGAAGTCATAGTTAAATTTGAGGCCCAGCTCGAAGATGAAACACTTGTAGCAAAATCTGACACCGTGGAATTCACTGTCAAAGAGGGTTACTTCTGTCCTGCATTGGCAAAGGCAGTTAAAACAATGAAGAAGAGCGAAAAAGTATTGTTGACGGTGAAACCACAATATGGATTTGGGGACAAGGGTAAGCCTGCATCTGGTGATGAGGGTGCTGTTCCTCCAAATGCAACTCTTCATATTACTCTAGAGTTGGTATCGTGGAGAACAGTCTCAGAACTGACAGATGACAAGAAAGTTATTAAGAAGATCCTAAAAGAAGGGGAAGGGTATGAGCGTCCAAATGAAGGAGCTGTTGTTACAGTGAAATTGATTGGAAAGTTGCAAGATGGTAAGGAATTTTTAAAGAAAGGTCATGGTGAAGGAGAAGAACCATTTGAGTTCAAGACAGATGAGGAGCAAGTCATTGAGGGGCTTGATAGAGCTGTAGTGACAATGAAGAAGGGTGAGATAGCTCTTGCTGTGAAGTACATCGAGTATGATTCGGCTTTTGCTGATGAGGAGAAAAAACAGGCTAAGGTGTTGAAGGTTGCTTGCAATCTCAATGATGCTGCTTGCAAATTGAAGCTGAAAGAGTACAAACAGGCTGAAAAGCTGTGTACCAAGGTGTTGGAGCTTGAGGGTAAGAATGTAAAGGCCCTGTACAGAAGAGCTCAGGCATATATCCAGCTGGCTGATTTGGATTTGGCTGAGCTTGACATCAAGAAAGCTCTTGAAATAGAACCTAACAACAGGGATGTGAAGCTGGAGTACAAAACTTTGAAGGAGAAGATGAAAGAACTCAATAAAAAGGAGGCAAAGTTCTATGGCAACATGTTTGCTAAACTGACTAAAAATTCCAATAAGGATGCTGAACCAATGAGCGTAGACAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0006457 GO:0006464 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010286 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0033554 GO:0034605 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051716 GO:0061077 GO:0070370 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04915 map04915

Pfam Domains

Protein Families

FKBP_C TPR_1 TPR_2 TPR_8

Protein Analysis

401

Amino Acids

44.9

Weight (kDa)

6.38

Isoelectric Point (pI)

25.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	7 - 59	1.2e-19	FKBP-type peptidyl-prolyl cis-trans isomerase
FKBP_C	PF00254	85 - 176	1.3e-16	FKBP-type peptidyl-prolyl cis-trans isomerase
FKBP_C	PF00254	201 - 281	5.2e-13	FKBP-type peptidyl-prolyl cis-trans isomerase
TPR_19	PF14559	298 - 357	8.9e-06	Tetratricopeptide repeat
TPR_1	PF00515	321 - 354	1.5e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25230 AT3G25230
fragaria_vesca	FvH4_2g18150 FvH4_2g18150 FvH4_2g18150
malus_domestica	MD05G1166200.v1.1 MD10G1156300.v1.1
prunus_persica	Prupe.8G194100_v2.0.a1
pyrus_communis	pycom05g15490 pycom10g13450
rosa_chinensis	RchiOBHm_Chr6g0283541 RchiOBHm_Chr7g0204881
rosa_laevigata	RLG00000003424 RLG00000012818
rosa_multiflora	Rmu_sc0005719.1_g000005 Rmu_sc0007194.1_g000004 Rmu_sc0031409.1_g000001 Rmu_sc0031410.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252700 Rroxscaffold_7G00185450
rosa_rugosa	Rorug06G0155300 Rorug06G0155400 Rorug06G0155500 Rorug06G0155600 Rorug07G0086300
rosa_samantha	Rh6AG267500 Rh6BG174200 Rh6BG270000 Rh6DG263400 Rh7AG217000 Rh7CG230200 Rh7DG224600
rosa_wichuraiana	Rw6G023160 Rw7G018810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	440
AccI	GTMKAC	1 cut(s)	1197
AclI	AACGTT	1 cut(s)	152
AclWI	GGATC	2 cut(s)	130, 574
AcsI	RAATTY	4 cut(s)	287, 341, 668, 1165
AfaI	GTAC	5 cut(s)	800, 908, 931, 974, 1082
AfiI	CCNNNNNNNGG	3 cut(s)	440, 470, 617
AflIII	ACRYGT	1 cut(s)	1143
AgsI	TTSAA	7 cut(s)	170, 235, 715, 856, 895, 1046, 1093
AloI	GAACNNNNNNTCC	2 cut(s)	1115, 1147
Alw21I	GWGCWC	1 cut(s)	985
Alw26I	GTCTC	1 cut(s)	547
AlwI	GGATC	2 cut(s)	130, 574
AoxI	GGCC	2 cut(s)	294, 966
ApeKI	GCWGC	1 cut(s)	881
ApoI	RAATTY	4 cut(s)	287, 341, 668, 1165
AspS9I	GGNCC	3 cut(s)	183, 295, 967
AsuHPI	GGTGA	6 cut(s)	79, 83, 439, 485, 701, 788
AvaII	GGWCC	1 cut(s)	183
BanII	GRGCYC	1 cut(s)	985
BarI	GAAGNNNNNNTAC	2 cut(s)	1064, 1096
Bbv12I	GWGCWC	1 cut(s)	985
BbvI	GCAGC	1 cut(s)	868
BccI	CCATC	4 cut(s)	33, 143, 203, 653
BcoDI	GTCTC	1 cut(s)	547
BfaI	CTAG	2 cut(s)	518, 1204
BfmI	CTRYAG	1 cut(s)	756
BisI	GCNGC	1 cut(s)	882
BlpI	GCTNAGC	1 cut(s)	1020
BlsI	GCNGC	1 cut(s)	883
Bme18I	GGWCC	1 cut(s)	183
BmgT120I	GGNCC	3 cut(s)	183, 295, 967
BmsI	GCATC	3 cut(s)	476, 868, 1168
BpmI	CTGGAG	1 cut(s)	1097
Bpu10I	CCTNAGC	2 cut(s)	846, 984
Bpu1102I	GCTNAGC	1 cut(s)	1020
BpuEI	CTTGAG	1 cut(s)	968
BsaJI	CCNNGG	3 cut(s)	204, 336, 933
BsaXI	ACNNNNNCTCC	8 cut(s)	79, 109, 124, 154, 612, 642, 1115, 1145
Bsc4I	CCNNNNNNNGG	3 cut(s)	440, 470, 617
Bse1I	ACTGG	1 cut(s)	186
BseDI	CCNNGG	3 cut(s)	204, 336, 933
BseGI	GGATG	6 cut(s)	44, 49, 135, 214, 1072, 1183
BseLI	CCNNNNNNNGG	3 cut(s)	440, 470, 617
BseMII	CTCAG	3 cut(s)	558, 998, 1011
BseNI	ACTGG	1 cut(s)	186
BseRI	GAGGAG	2 cut(s)	740, 845
BseXI	GCAGC	1 cut(s)	868
BseYI	CCCAGC	1 cut(s)	297
BshFI	GGCC	2 cut(s)	296, 968
BsiHKAI	GWGCWC	1 cut(s)	985
BslFI	GGGAC	1 cut(s)	464
BslI	CCNNNNNNNGG	3 cut(s)	440, 470, 617
BsmAI	GTCTC	1 cut(s)	547
BsmFI	GGGAC	1 cut(s)	464
BsmI	GAATGC	1 cut(s)	82
BsnI	GGCC	2 cut(s)	296, 968
Bsp1286I	GDGCHC	1 cut(s)	985
Bsp1407I	TGTACA	1 cut(s)	972
Bsp143I	GATC	2 cut(s)	122, 579
Bsp1720I	GCTNAGC	1 cut(s)	1020
BspANI	GGCC	2 cut(s)	296, 968
BspCNI	CTCAG	3 cut(s)	557, 997, 1012
BspPI	GGATC	2 cut(s)	130, 574
BspQI	GCTCTTC	2 cut(s)	398, 973
BsrGI	TGTACA	1 cut(s)	972
BsrI	ACTGG	1 cut(s)	186
BssECI	CCNNGG	3 cut(s)	204, 336, 933
BssMI	GATC	2 cut(s)	122, 579
BssT1I	CCWWGG	2 cut(s)	204, 933
Bst4CI	ACNGT	5 cut(s)	337, 349, 427, 541, 634
Bst6I	CTCTTC	3 cut(s)	398, 510, 973
BstAUI	TGTACA	1 cut(s)	972
BstC8I	GCNNGC	4 cut(s)	465, 865, 886, 1002
BstDEI	CTNAG	4 cut(s)	544, 846, 984, 1020
BstDSI	CCRYGG	1 cut(s)	336
BstF5I	GGATG	6 cut(s)	44, 49, 135, 214, 1072, 1183
BstKTI	GATC	2 cut(s)	125, 582
BstMAI	GTCTC	1 cut(s)	547
BstMBI	GATC	2 cut(s)	122, 579
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 1200
BstNSI	RCATGY	1 cut(s)	1147
BstSFI	CTRYAG	1 cut(s)	756
BstV1I	GCAGC	1 cut(s)	868
BstX2I	RGATCY	2 cut(s)	122, 579
BstXI	CCANNNNNNTGG	1 cut(s)	940
BstYI	RGATCY	2 cut(s)	122, 579
BsuRI	GGCC	2 cut(s)	296, 968
BtgI	CCRYGG	1 cut(s)	336
BtsCI	GGATG	6 cut(s)	44, 49, 135, 214, 1072, 1183
BtsIMutI	CAGTG	3 cut(s)	193, 345, 639
Cac8I	GCNNGC	4 cut(s)	465, 865, 886, 1002
Cfr13I	GGNCC	3 cut(s)	183, 295, 967
CseI	GACGC	2 cut(s)	105, 596
Csp6I	GTAC	5 cut(s)	799, 907, 930, 973, 1081
CspCI	CAANNNNNGTGG	2 cut(s)	193, 228
CviAII	CATG	2 cut(s)	686, 1144
CviQI	GTAC	5 cut(s)	799, 907, 930, 973, 1081
DdeI	CTNAG	4 cut(s)	544, 846, 984, 1020
DpnI	GATC	2 cut(s)	124, 581
DpnII	GATC	2 cut(s)	122, 579
DraI	TTTAAA	1 cut(s)	675
Eam1104I	CTCTTC	3 cut(s)	398, 510, 973
EarI	CTCTTC	3 cut(s)	398, 510, 973
Ecl136II	GAGCTC	1 cut(s)	983
Eco130I	CCWWGG	2 cut(s)	204, 933
Eco24I	GRGCYC	1 cut(s)	985
Eco47I	GGWCC	1 cut(s)	183
Eco53kI	GAGCTC	1 cut(s)	983
EcoICRI	GAGCTC	1 cut(s)	983
EcoO109I	RGGNCCY	1 cut(s)	967
EcoRI	GAATTC	1 cut(s)	341
EcoT14I	CCWWGG	2 cut(s)	204, 933
EcoT38I	GRGCYC	1 cut(s)	985
ErhI	CCWWGG	2 cut(s)	204, 933
FaeI	CATG	2 cut(s)	689, 1147
FaqI	GGGAC	1 cut(s)	464
FatI	CATG	2 cut(s)	685, 1143
FblI	GTMKAC	1 cut(s)	1197
Fnu4HI	GCNGC	1 cut(s)	882
FokI	GGATG	6 cut(s)	51, 56, 122, 221, 1079, 1190
FriOI	GRGCYC	1 cut(s)	985
Fsp4HI	GCNGC	1 cut(s)	882
FspBI	CTAG	2 cut(s)	518, 1204
GluI	GCNGC	1 cut(s)	882
GsaI	CCCAGC	1 cut(s)	301
GsuI	CTGGAG	1 cut(s)	1097
HaeIII	GGCC	2 cut(s)	296, 968
HgaI	GACGC	2 cut(s)	105, 596
Hin1II	CATG	2 cut(s)	689, 1147
HincII	GTYRAC	1 cut(s)	423
HindII	GTYRAC	1 cut(s)	423
HinfI	GANTC	1 cut(s)	812
HphI	GGTGA	6 cut(s)	79, 83, 439, 485, 701, 788
Hpy166II	GTNNAC	5 cut(s)	183, 193, 423, 930, 1198
Hpy188I	TCNGA	2 cut(s)	331, 547
Hpy188III	TCNNGA	6 cut(s)	98, 120, 518, 715, 1033, 1043
Hpy8I	GTNNAC	5 cut(s)	183, 193, 423, 930, 1198
HpyAV	CCTTC	9 cut(s)	41, 220, 584, 590, 611, 686, 766, 850, 1087
HpyCH4III	ACNGT	5 cut(s)	337, 349, 427, 541, 634
HpyCH4IV	ACGT	1 cut(s)	152
HpyCH4V	TGCA	8 cut(s)	149, 157, 374, 467, 500, 655, 867, 888
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 1200
HpyF3I	CTNAG	4 cut(s)	544, 846, 984, 1020
HpySE526I	ACGT	1 cut(s)	152
Hsp92II	CATG	2 cut(s)	689, 1147
Kzo9I	GATC	2 cut(s)	122, 579
LguI	GCTCTTC	2 cut(s)	398, 973
LmnI	GCTCC	3 cut(s)	620, 727, 943
Lsp1109I	GCAGC	1 cut(s)	868
LweI	GCATC	3 cut(s)	476, 868, 1168
MaeI	CTAG	2 cut(s)	518, 1204
MaeII	ACGT	1 cut(s)	152
MaeIII	GTNAC	3 cut(s)	359, 628, 760
MalI	GATC	2 cut(s)	124, 581
MboI	GATC	2 cut(s)	122, 579
MflI	RGATCY	2 cut(s)	122, 579
MhlI	GDGCHC	1 cut(s)	985
MluCI	AATT	8 cut(s)	170, 216, 287, 341, 638, 668, 890, 1165
MmeI	TCCRAC	1 cut(s)	921
MseI	TTAA	7 cut(s)	33, 54, 222, 285, 390, 573, 674
MspA1I	CMGCKG	1 cut(s)	1000
Mva1269I	GAATGC	1 cut(s)	82
MwoI	GCNNNNNNNGC	2 cut(s)	113, 1200
NdeII	GATC	2 cut(s)	122, 579
NlaIII	CATG	2 cut(s)	689, 1147
NmuCI	GTSAC	1 cut(s)	760
NspI	RCATGY	1 cut(s)	1147
PciI	ACATGT	1 cut(s)	1143
PciSI	GCTCTTC	2 cut(s)	398, 973
PctI	GAATGC	1 cut(s)	82
PfeI	GAWTC	1 cut(s)	812
PflMI	CCANNNNNTGG	1 cut(s)	440
PkrI	GCNGC	1 cut(s)	883
PscI	ACATGT	1 cut(s)	1143
Psp124BI	GAGCTC	1 cut(s)	985
Psp1406I	AACGTT	1 cut(s)	152
PspFI	CCCAGC	1 cut(s)	297
PspPI	GGNCC	3 cut(s)	183, 295, 967
PsuI	RGATCY	2 cut(s)	122, 579
PvuII	CAGCTG	1 cut(s)	1000
RsaI	GTAC	5 cut(s)	800, 908, 931, 974, 1082
RsaNI	GTAC	5 cut(s)	799, 907, 930, 973, 1081
SacI	GAGCTC	1 cut(s)	985
SapI	GCTCTTC	2 cut(s)	398, 973
SaqAI	TTAA	7 cut(s)	33, 54, 222, 285, 390, 573, 674
SatI	GCNGC	1 cut(s)	882
Sau3AI	GATC	2 cut(s)	122, 579
Sau96I	GGNCC	3 cut(s)	183, 295, 967
SduI	GDGCHC	1 cut(s)	985
SfaNI	GCATC	3 cut(s)	476, 868, 1168
SfcI	CTRYAG	1 cut(s)	756
SinI	GGWCC	1 cut(s)	183
SmlI	CTYRAG	1 cut(s)	947
SmoI	CTYRAG	1 cut(s)	947
Sse9I	AATT	8 cut(s)	170, 216, 287, 341, 638, 668, 890, 1165
SspMI	CTAG	2 cut(s)	518, 1204
SstI	GAGCTC	1 cut(s)	985
StyI	CCWWGG	2 cut(s)	204, 933
TaaI	ACNGT	5 cut(s)	337, 349, 427, 541, 634
TaiI	ACGT	1 cut(s)	155
TaqI	TCGA	3 cut(s)	162, 303, 804
TasI	AATT	8 cut(s)	170, 216, 287, 341, 638, 668, 890, 1165
TatI	WGTACW	4 cut(s)	798, 906, 972, 1080
TfiI	GAWTC	1 cut(s)	812
Tru1I	TTAA	7 cut(s)	33, 54, 222, 285, 390, 573, 674
Tru9I	TTAA	7 cut(s)	33, 54, 222, 285, 390, 573, 674
TscAI	CASTG	3 cut(s)	193, 352, 639
TseFI	GTSAC	1 cut(s)	760
TseI	GCWGC	1 cut(s)	881
Tsp45I	GTSAC	1 cut(s)	760
TspDTI	ATGAA	9 cut(s)	60, 77, 288, 324, 413, 497, 630, 782, 1118
TspRI	CASTG	3 cut(s)	193, 352, 639
Van91I	CCANNNNNTGG	1 cut(s)	440
VpaK11BI	GGWCC	1 cut(s)	183
XapI	RAATTY	4 cut(s)	287, 341, 668, 1165
XbaI	TCTAGA	1 cut(s)	517
XceI	RCATGY	1 cut(s)	1147
XmiI	GTMKAC	1 cut(s)	1197
XspI	CTAG	2 cut(s)	518, 1204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.