Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031410.1

Orthogroup ID

OG0003751

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1099

Gene Structure 1099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031410.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 667 bp

atgaagaaaggtgagaatgcccttttcaccattcctcctgatatggcttatggtgcgtctggatctcccccaaccatccctccaaatgcaacgttgcagttcgatgttgaattgctatcgtggaccagtgtaaacgacataaccaaggatggtggaattattaagaaggttttgaaagagggagaaaaatgggagaacccaaaagaccttgatgaagtcatagttaaatttgaggcccagctcgaagataaaacacttgtagcaaaatctgacaccgtggaattcactgtcaaagagggttacttctgtcctgcattggcaaaggcagttaaaacaatgaagaagagcgaaaaagtattgttgacggtgaaaccacaatatggatttggggacaagggtaagcctgcatctggtgatgagggtgctgttcctccaaatgcaactcttcatattactctagagttggtatcgtggagaacagtctcagaactgacagatgacaagaaagttacgaagaagatcctaaaagaaggggaagggtatgagcgtccaaatgaaggagctgttgttacagtgaaattgattggaaagttgcaagatggtaaggaatttttaaagaaaggtcatggtgaaggagaagaaccatttgagttcaagacagatgagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0006457 GO:0006464 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010286 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0033554 GO:0034605 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051716 GO:0061077 GO:0070370 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04915 map04915

Pfam Domains

Protein Families

FKBP_C TPR_1 TPR_2 TPR_8

Protein Analysis

222

Amino Acids

24.4

Weight (kDa)

5.37

Isoelectric Point (pI)

15.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25230 AT3G25230
fragaria_vesca	FvH4_2g18150 FvH4_2g18150 FvH4_2g18150
malus_domestica	MD05G1166200.v1.1 MD10G1156300.v1.1
prunus_persica	Prupe.8G194100_v2.0.a1
pyrus_communis	pycom05g15490 pycom10g13450
rosa_chinensis	RchiOBHm_Chr6g0283541 RchiOBHm_Chr7g0204881
rosa_laevigata	RLG00000003424 RLG00000012818
rosa_multiflora	Rmu_sc0005719.1_g000005 Rmu_sc0007194.1_g000004 Rmu_sc0031409.1_g000001 Rmu_sc0031410.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252700 Rroxscaffold_7G00185450
rosa_rugosa	Rorug06G0155300 Rorug06G0155400 Rorug06G0155500 Rorug06G0155600 Rorug07G0086300
rosa_samantha	Rh6AG267500 Rh6BG174200 Rh6BG270000 Rh6DG263400 Rh7AG217000 Rh7CG230200 Rh7DG224600
rosa_wichuraiana	Rw6G023160 Rw7G018810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	380
AclI	AACGTT	1 cut(s)	92
AclWI	GGATC	2 cut(s)	70, 514
AcsI	RAATTY	3 cut(s)	227, 281, 608
AfiI	CCNNNNNNNGG	3 cut(s)	380, 410, 557
AgsI	TTSAA	3 cut(s)	110, 175, 655
AluBI	AGCT	2 cut(s)	241, 563
AluI	AGCT	2 cut(s)	241, 563
Alw26I	GTCTC	1 cut(s)	487
AlwI	GGATC	2 cut(s)	70, 514
AoxI	GGCC	1 cut(s)	234
ApoI	RAATTY	3 cut(s)	227, 281, 608
AspS9I	GGNCC	2 cut(s)	123, 235
AsuHPI	GGTGA	5 cut(s)	19, 23, 379, 425, 641
AvaII	GGWCC	1 cut(s)	123
BccI	CCATC	3 cut(s)	83, 143, 593
BcoDI	GTCTC	1 cut(s)	487
BfaI	CTAG	1 cut(s)	458
Bme18I	GGWCC	1 cut(s)	123
BmgT120I	GGNCC	2 cut(s)	123, 235
BmsI	GCATC	1 cut(s)	416
BsaJI	CCNNGG	2 cut(s)	144, 276
BsaXI	ACNNNNNCTCC	6 cut(s)	19, 49, 64, 94, 552, 582
Bsc4I	CCNNNNNNNGG	3 cut(s)	380, 410, 557
Bse1I	ACTGG	1 cut(s)	126
BseDI	CCNNGG	2 cut(s)	144, 276
BseGI	GGATG	2 cut(s)	75, 154
BseLI	CCNNNNNNNGG	3 cut(s)	380, 410, 557
BseMII	CTCAG	1 cut(s)	498
BseNI	ACTGG	1 cut(s)	126
BseYI	CCCAGC	1 cut(s)	237
BshFI	GGCC	1 cut(s)	236
BslFI	GGGAC	1 cut(s)	404
BslI	CCNNNNNNNGG	3 cut(s)	380, 410, 557
BsmAI	GTCTC	1 cut(s)	487
BsmFI	GGGAC	1 cut(s)	404
BsmI	GAATGC	1 cut(s)	22
BsnI	GGCC	1 cut(s)	236
Bsp143I	GATC	2 cut(s)	62, 519
BspANI	GGCC	1 cut(s)	236
BspCNI	CTCAG	1 cut(s)	497
BspPI	GGATC	2 cut(s)	70, 514
BspQI	GCTCTTC	1 cut(s)	338
BsrI	ACTGG	1 cut(s)	126
BssECI	CCNNGG	2 cut(s)	144, 276
BssMI	GATC	2 cut(s)	62, 519
BssT1I	CCWWGG	1 cut(s)	144
Bst4CI	ACNGT	5 cut(s)	277, 289, 367, 481, 574
Bst6I	CTCTTC	2 cut(s)	338, 450
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	1 cut(s)	484
BstDSI	CCRYGG	1 cut(s)	276
BstF5I	GGATG	2 cut(s)	75, 154
BstKTI	GATC	2 cut(s)	65, 522
BstMAI	GTCTC	1 cut(s)	487
BstMBI	GATC	2 cut(s)	62, 519
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstX2I	RGATCY	2 cut(s)	62, 519
BstYI	RGATCY	2 cut(s)	62, 519
BsuRI	GGCC	1 cut(s)	236
BtgI	CCRYGG	1 cut(s)	276
BtsCI	GGATG	2 cut(s)	75, 154
BtsIMutI	CAGTG	3 cut(s)	133, 285, 579
Cac8I	GCNNGC	1 cut(s)	405
Cfr13I	GGNCC	2 cut(s)	123, 235
CseI	GACGC	2 cut(s)	45, 536
CspCI	CAANNNNNGTGG	2 cut(s)	133, 168
CviAII	CATG	1 cut(s)	626
CviJI	RGCY	5 cut(s)	47, 236, 241, 403, 563
CviKI_1	RGCY	5 cut(s)	47, 236, 241, 403, 563
DdeI	CTNAG	1 cut(s)	484
DpnI	GATC	2 cut(s)	64, 521
DpnII	GATC	2 cut(s)	62, 519
DraI	TTTAAA	1 cut(s)	615
Eam1104I	CTCTTC	2 cut(s)	338, 450
EarI	CTCTTC	2 cut(s)	338, 450
Eco130I	CCWWGG	1 cut(s)	144
Eco47I	GGWCC	1 cut(s)	123
EcoRI	GAATTC	1 cut(s)	281
EcoT14I	CCWWGG	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	1 cut(s)	629
FaiI	YATR	8 cut(s)	44, 51, 140, 221, 381, 450, 543, 627
FaqI	GGGAC	1 cut(s)	404
FatI	CATG	1 cut(s)	625
FokI	GGATG	2 cut(s)	62, 161
FspBI	CTAG	1 cut(s)	458
GsaI	CCCAGC	1 cut(s)	241
HaeIII	GGCC	1 cut(s)	236
HgaI	GACGC	2 cut(s)	45, 536
Hin1II	CATG	1 cut(s)	629
HincII	GTYRAC	1 cut(s)	363
HindII	GTYRAC	1 cut(s)	363
HphI	GGTGA	5 cut(s)	19, 23, 379, 425, 641
Hpy166II	GTNNAC	3 cut(s)	123, 133, 363
Hpy188I	TCNGA	2 cut(s)	271, 487
Hpy188III	TCNNGA	4 cut(s)	38, 60, 458, 655
Hpy8I	GTNNAC	3 cut(s)	123, 133, 363
HpyAV	CCTTC	5 cut(s)	160, 524, 530, 551, 626
HpyCH4III	ACNGT	5 cut(s)	277, 289, 367, 481, 574
HpyCH4IV	ACGT	1 cut(s)	92
HpyCH4V	TGCA	6 cut(s)	89, 97, 314, 407, 440, 595
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	1 cut(s)	484
HpySE526I	ACGT	1 cut(s)	92
Hsp92II	CATG	1 cut(s)	629
Kzo9I	GATC	2 cut(s)	62, 519
LguI	GCTCTTC	1 cut(s)	338
LmnI	GCTCC	1 cut(s)	560
LpnPI	CCDG	7 cut(s)	45, 51, 139, 251, 324, 396, 417
LweI	GCATC	1 cut(s)	416
MaeI	CTAG	1 cut(s)	458
MaeII	ACGT	1 cut(s)	92
MaeIII	GTNAC	3 cut(s)	299, 508, 568
MalI	GATC	2 cut(s)	64, 521
MboI	GATC	2 cut(s)	62, 519
MboII	GAAGA	8 cut(s)	16, 257, 352, 355, 437, 526, 529, 650
MflI	RGATCY	2 cut(s)	62, 519
MluCI	AATT	6 cut(s)	110, 156, 227, 281, 578, 608
MnlI	CCTC	8 cut(s)	45, 90, 172, 226, 289, 412, 441, 658
MseI	TTAA	4 cut(s)	162, 225, 330, 614
Mva1269I	GAATGC	1 cut(s)	22
MwoI	GCNNNNNNNGC	1 cut(s)	53
NdeII	GATC	2 cut(s)	62, 519
NlaIII	CATG	1 cut(s)	629
PciSI	GCTCTTC	1 cut(s)	338
PctI	GAATGC	1 cut(s)	22
PflMI	CCANNNNNTGG	1 cut(s)	380
Psp1406I	AACGTT	1 cut(s)	92
PspFI	CCCAGC	1 cut(s)	237
PspPI	GGNCC	2 cut(s)	123, 235
PsuI	RGATCY	2 cut(s)	62, 519
SapI	GCTCTTC	1 cut(s)	338
SaqAI	TTAA	4 cut(s)	162, 225, 330, 614
Sau3AI	GATC	2 cut(s)	62, 519
Sau96I	GGNCC	2 cut(s)	123, 235
SetI	ASST	7 cut(s)	13, 95, 171, 210, 243, 565, 625
SfaNI	GCATC	1 cut(s)	416
SinI	GGWCC	1 cut(s)	123
Sse9I	AATT	6 cut(s)	110, 156, 227, 281, 578, 608
SspMI	CTAG	1 cut(s)	458
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	5 cut(s)	277, 289, 367, 481, 574
TaiI	ACGT	1 cut(s)	95
TaqI	TCGA	2 cut(s)	102, 243
TasI	AATT	6 cut(s)	110, 156, 227, 281, 578, 608
Tru1I	TTAA	4 cut(s)	162, 225, 330, 614
Tru9I	TTAA	4 cut(s)	162, 225, 330, 614
TscAI	CASTG	3 cut(s)	133, 292, 579
TspDTI	ATGAA	5 cut(s)	17, 228, 353, 437, 570
TspRI	CASTG	3 cut(s)	133, 292, 579
Van91I	CCANNNNNTGG	1 cut(s)	380
VpaK11BI	GGWCC	1 cut(s)	123
XapI	RAATTY	3 cut(s)	227, 281, 608
XbaI	TCTAGA	1 cut(s)	457
XspI	CTAG	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.