Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003751

Physical Location & Seq

Genomic Coordinates Forward (+)

20192905 .. 20196472

Gene Structure 3568 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG217000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGAGCTTCAGGAATTGGAACTGGAAATCGAGCTGGAACAACTGGAAGTGGAAATCCAGAGGCTAGAACGGGAATGGCAAATCGAGCCGGAACAGGTTCTTGAGGAGGCGTTTGTTCTTGCTGAACAAGATGATGATGAAATTTCGGAGCCCAACAGTGAAGAAGAACGCGAATTGGAAATGGAGCTTCAAGAATTAGAACTGGAAGAACTGGAAGTGGAACTCCAGAGGCTAGAACGGGAATGGCAAATCGAGCCGGAACAGAATGGTGAGGATGCCCTTTTCACCAATTCTCCTGAGATGGCTTATGATGCGTCGGGATCTTCCCCAACCATTTCTCCAAATGCCCCGTTGCAGTTTGGTGTTGAATTGCTATCGTGGACCAGTGTGAATGACATAACCAAGGATGGTGGAATTATTAAGAAGGTCTTGAAAGAGGGAGAAGAATGGGAGAGGGAGAACCCAAAAGATCTTGATGAAGTCATAGTTAAATTTGAGGCCCATCTCGAAGATAAAACACTTGTAGCAAAATCTGACCCCGTGGAATTCACTGTCAAAGAGGGTTACTTCTGTCCTGCATTGGCAAAGGCTGTGAAAACAATGAAGAAGGCCGAAAAAGTATTGCTAACGGTGAAACCACAATATGGATTTGGGGACAAGGGTAAGCCTGCCTCTGGTGATGAGGGTGCTGTTCCTCCAAATGCAACTCTTCATATTACTCTAGAGTTGGTATCGTGGAGAACAGTCTCAGAATTGACAGATGACCAGAAAGTTATTAAGAAGATCCTAAAAGAAGGGGAAGGGGATGAGCGTCCAAATGAAGGAGCTTTTGTTACAGTGAAATTGATTGGAAAGTTGCAAGACGGAAAGGAATTTTTAAAGAAAGGTCATGCTGGAGGAGAAGAACCATTTGCGTTCAAGACAGATAAGGAGCAAGTCATTGAGGGGCTTGATAGAGCTGTAGTGACAATGAAGAAAGGTGAGATAGCTGTTGTGATTATAGCCCCTGAGTATGGATTTGGCTCGTCAGAGTCCCAGCAGGAGTTGGCAGTAGTGCCTCCTAATTCGACCCTCTATTATGAGATCGAGCTTGTATCTTTTGTCAAGGACAAGGAATCATGGGACATGAATACTCTGAATAAAATGGAGGCTGCTGGTAAGAAGAAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0006457 GO:0006464 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010286 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0033554 GO:0034605 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051716 GO:0061077 GO:0070370 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04915 map04915

Pfam Domains

Protein Families

FKBP_C TPR_1 TPR_2 TPR_8

Protein Analysis

390

Amino Acids

44.0

Weight (kDa)

4.44

Isoelectric Point (pI)

43.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	153 - 244	4.4e-17	FKBP-type peptidyl-prolyl cis-trans isomerase
FKBP_C	PF00254	269 - 365	7.1e-24	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25230 AT3G25230
fragaria_vesca	FvH4_2g18150 FvH4_2g18150 FvH4_2g18150
malus_domestica	MD05G1166200.v1.1 MD10G1156300.v1.1
prunus_persica	Prupe.8G194100_v2.0.a1
pyrus_communis	pycom05g15490 pycom10g13450
rosa_chinensis	RchiOBHm_Chr6g0283541 RchiOBHm_Chr7g0204881
rosa_laevigata	RLG00000003424 RLG00000012818
rosa_multiflora	Rmu_sc0005719.1_g000005 Rmu_sc0007194.1_g000004 Rmu_sc0031409.1_g000001 Rmu_sc0031410.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252700 Rroxscaffold_7G00185450
rosa_rugosa	Rorug06G0155300 Rorug06G0155400 Rorug06G0155500 Rorug06G0155600 Rorug07G0086300
rosa_samantha	Rh6AG267500 Rh6BG174200 Rh6BG270000 Rh6DG263400 Rh7AG217000 Rh7CG230200 Rh7DG224600
rosa_wichuraiana	Rw6G023160 Rw7G018810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	644
AccII	CGCG	1 cut(s)	171
AclWI	GGATC	2 cut(s)	328, 778
AcsI	RAATTY	4 cut(s)	141, 491, 545, 872
AfiI	CCNNNNNNNGG	4 cut(s)	644, 674, 821, 1013
AgsI	TTSAA	4 cut(s)	191, 368, 433, 919
AluBI	AGCT	7 cut(s)	7, 34, 187, 827, 959, 989, 1090
AluI	AGCT	7 cut(s)	7, 34, 187, 827, 959, 989, 1090
Alw26I	GTCTC	1 cut(s)	751
AlwI	GGATC	2 cut(s)	328, 778
AoxI	GGCC	2 cut(s)	498, 609
ApeKI	GCWGC	1 cut(s)	1151
ApoI	RAATTY	4 cut(s)	141, 491, 545, 872
Asp700I	GAANNNNTTC	1 cut(s)	96
AspS9I	GGNCC	2 cut(s)	381, 499
AsuHPI	GGTGA	5 cut(s)	277, 281, 643, 689, 992
AvaII	GGWCC	1 cut(s)	381
BanII	GRGCYC	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	1138
BccI	CCATC	3 cut(s)	295, 401, 510
BcoDI	GTCTC	1 cut(s)	751
BfaI	CTAG	3 cut(s)	65, 233, 722
BfmI	CTRYAG	1 cut(s)	960
BglII	AGATCT	1 cut(s)	469
BisI	GCNGC	1 cut(s)	1152
BlsI	GCNGC	1 cut(s)	1153
Bme18I	GGWCC	1 cut(s)	381
BmgT120I	GGNCC	2 cut(s)	381, 499
BmiI	GGNNCC	1 cut(s)	150
BmsI	GCATC	2 cut(s)	265, 301
BpmI	CTGGAG	2 cut(s)	209, 915
BpuEI	CTTGAG	1 cut(s)	122
BsaJI	CCNNGG	2 cut(s)	402, 540
BsaXI	ACNNNNNCTCC	6 cut(s)	277, 307, 322, 352, 816, 846
Bsc4I	CCNNNNNNNGG	4 cut(s)	644, 674, 821, 1013
Bse1I	ACTGG	5 cut(s)	27, 48, 207, 216, 384
BseDI	CCNNGG	2 cut(s)	402, 540
BseGI	GGATG	3 cut(s)	280, 412, 811
BseLI	CCNNNNNNNGG	4 cut(s)	644, 674, 821, 1013
BseMII	CTCAG	3 cut(s)	288, 762, 999
BseNI	ACTGG	5 cut(s)	27, 48, 207, 216, 384
BseRI	GAGGAG	2 cut(s)	119, 912
BseXI	GCAGC	1 cut(s)	1138
BseYI	CCCAGC	1 cut(s)	1035
Bsh1236I	CGCG	1 cut(s)	171
BshFI	GGCC	2 cut(s)	500, 611
BsiSI	CCGG	2 cut(s)	89, 257
BslFI	GGGAC	3 cut(s)	668, 1018, 1136
BslI	CCNNNNNNNGG	4 cut(s)	644, 674, 821, 1013
BsmAI	GTCTC	1 cut(s)	751
BsmFI	GGGAC	3 cut(s)	668, 1018, 1136
BsnI	GGCC	2 cut(s)	500, 611
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp143I	GATC	4 cut(s)	320, 469, 783, 1083
BspANI	GGCC	2 cut(s)	500, 611
BspCNI	CTCAG	3 cut(s)	289, 761, 1000
BspFNI	CGCG	1 cut(s)	171
BspLI	GGNNCC	1 cut(s)	150
BspPI	GGATC	2 cut(s)	328, 778
BsrI	ACTGG	5 cut(s)	27, 48, 207, 216, 384
BssECI	CCNNGG	2 cut(s)	402, 540
BssMI	GATC	4 cut(s)	320, 469, 783, 1083
BssT1I	CCWWGG	1 cut(s)	402
Bst4CI	ACNGT	5 cut(s)	158, 553, 631, 745, 838
Bst6I	CTCTTC	1 cut(s)	714
BstC8I	GCNNGC	1 cut(s)	669
BstDEI	CTNAG	3 cut(s)	297, 748, 1008
BstDSI	CCRYGG	1 cut(s)	540
BstF5I	GGATG	3 cut(s)	280, 412, 811
BstFNI	CGCG	1 cut(s)	171
BstKTI	GATC	4 cut(s)	323, 472, 786, 1086
BstMAI	GTCTC	1 cut(s)	751
BstMBI	GATC	4 cut(s)	320, 469, 783, 1083
BstMWI	GCNNNNNNNGC	3 cut(s)	85, 253, 311
BstSFI	CTRYAG	1 cut(s)	960
BstUI	CGCG	1 cut(s)	171
BstV1I	GCAGC	1 cut(s)	1138
BstX2I	RGATCY	3 cut(s)	320, 469, 783
BstYI	RGATCY	3 cut(s)	320, 469, 783
BsuRI	GGCC	2 cut(s)	500, 611
BtgI	CCRYGG	1 cut(s)	540
BtsCI	GGATG	3 cut(s)	280, 412, 811
BtsIMutI	CAGTG	4 cut(s)	163, 391, 549, 843
Cac8I	GCNNGC	1 cut(s)	669
Cfr13I	GGNCC	2 cut(s)	381, 499
CseI	GACGC	2 cut(s)	303, 800
CspCI	CAANNNNNGTGG	2 cut(s)	391, 426
CviAII	CATG	3 cut(s)	890, 1119, 1126
DdeI	CTNAG	3 cut(s)	297, 748, 1008
DpnI	GATC	4 cut(s)	322, 471, 785, 1085
DpnII	GATC	4 cut(s)	320, 469, 783, 1083
DraI	TTTAAA	1 cut(s)	879
Eam1104I	CTCTTC	1 cut(s)	714
EarI	CTCTTC	1 cut(s)	714
Eco130I	CCWWGG	1 cut(s)	402
Eco24I	GRGCYC	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	381
EcoRI	GAATTC	1 cut(s)	545
EcoT14I	CCWWGG	1 cut(s)	402
EcoT38I	GRGCYC	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	402
FaeI	CATG	3 cut(s)	893, 1122, 1129
FalI	AAGNNNNNCTT	2 cut(s)	413, 445
FaqI	GGGAC	3 cut(s)	668, 1018, 1136
FatI	CATG	3 cut(s)	889, 1118, 1125
Fnu4HI	GCNGC	1 cut(s)	1152
FokI	GGATG	3 cut(s)	287, 419, 818
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	1 cut(s)	1152
FspBI	CTAG	3 cut(s)	65, 233, 722
GluI	GCNGC	1 cut(s)	1152
GsaI	CCCAGC	1 cut(s)	1039
GsuI	CTGGAG	2 cut(s)	209, 915
HaeIII	GGCC	2 cut(s)	500, 611
HapII	CCGG	2 cut(s)	89, 257
HgaI	GACGC	2 cut(s)	303, 800
Hin1II	CATG	3 cut(s)	893, 1122, 1129
HinfI	GANTC	2 cut(s)	1031, 1115
HpaII	CCGG	2 cut(s)	89, 257
HphI	GGTGA	5 cut(s)	277, 281, 643, 689, 992
Hpy166II	GTNNAC	1 cut(s)	381
Hpy188I	TCNGA	5 cut(s)	148, 535, 751, 1030, 1137
Hpy8I	GTNNAC	1 cut(s)	381
Hpy99I	CGWCG	1 cut(s)	319
HpyAV	CCTTC	6 cut(s)	418, 601, 788, 794, 815, 1159
HpyCH4III	ACNGT	5 cut(s)	158, 553, 631, 745, 838
HpyCH4V	TGCA	4 cut(s)	355, 578, 704, 859
HpyF10VI	GCNNNNNNNGC	3 cut(s)	85, 253, 311
HpyF3I	CTNAG	3 cut(s)	297, 748, 1008
Hsp92II	CATG	3 cut(s)	893, 1122, 1129
Kzo9I	GATC	4 cut(s)	320, 469, 783, 1083
LmnI	GCTCC	5 cut(s)	4, 148, 184, 824, 931
Lsp1109I	GCAGC	1 cut(s)	1138
LweI	GCATC	2 cut(s)	265, 301
MaeI	CTAG	3 cut(s)	65, 233, 722
MaeIII	GTNAC	3 cut(s)	563, 832, 964
MalI	GATC	4 cut(s)	322, 471, 785, 1085
MboI	GATC	4 cut(s)	320, 469, 783, 1083
MflI	RGATCY	3 cut(s)	320, 469, 783
MhlI	GDGCHC	1 cut(s)	153
MlyI	GAGTC	1 cut(s)	1040
MroXI	GAANNNNTTC	1 cut(s)	96
MseI	TTAA	4 cut(s)	420, 489, 777, 878
MspI	CCGG	2 cut(s)	89, 257
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	3 cut(s)	85, 253, 311
NdeII	GATC	4 cut(s)	320, 469, 783, 1083
NlaIII	CATG	3 cut(s)	893, 1122, 1129
NlaIV	GGNNCC	1 cut(s)	150
NmuCI	GTSAC	1 cut(s)	964
PdmI	GAANNNNTTC	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	1115
PflMI	CCANNNNNTGG	1 cut(s)	644
PkrI	GCNGC	1 cut(s)	1153
PleI	GAGTC	1 cut(s)	1039
PpsI	GAGTC	1 cut(s)	1039
PspFI	CCCAGC	1 cut(s)	1035
PspN4I	GGNNCC	1 cut(s)	150
PspPI	GGNCC	2 cut(s)	381, 499
PsuI	RGATCY	3 cut(s)	320, 469, 783
SaqAI	TTAA	4 cut(s)	420, 489, 777, 878
SatI	GCNGC	1 cut(s)	1152
Sau3AI	GATC	4 cut(s)	320, 469, 783, 1083
Sau96I	GGNCC	2 cut(s)	381, 499
SchI	GAGTC	1 cut(s)	1040
SduI	GDGCHC	1 cut(s)	153
SfaNI	GCATC	2 cut(s)	265, 301
SfcI	CTRYAG	1 cut(s)	960
SinI	GGWCC	1 cut(s)	381
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
SspMI	CTAG	3 cut(s)	65, 233, 722
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	5 cut(s)	158, 553, 631, 745, 838
TaqI	TCGA	6 cut(s)	30, 84, 252, 507, 1067, 1086
TfiI	GAWTC	1 cut(s)	1115
Tru1I	TTAA	4 cut(s)	420, 489, 777, 878
Tru9I	TTAA	4 cut(s)	420, 489, 777, 878
TscAI	CASTG	4 cut(s)	163, 391, 556, 843
TseFI	GTSAC	1 cut(s)	964
TseI	GCWGC	1 cut(s)	1151
Tsp45I	GTSAC	1 cut(s)	964
TspDTI	ATGAA	7 cut(s)	153, 492, 617, 701, 834, 986, 1142
TspGWI	ACGGA	1 cut(s)	879
TspRI	CASTG	4 cut(s)	163, 391, 556, 843
Van91I	CCANNNNNTGG	1 cut(s)	644
VpaK11BI	GGWCC	1 cut(s)	381
XapI	RAATTY	4 cut(s)	141, 491, 545, 872
XbaI	TCTAGA	1 cut(s)	721
XmnI	GAANNNNTTC	1 cut(s)	96
XspI	CTAG	3 cut(s)	65, 233, 722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.