RLG00000012818

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
22660114 .. 22663744
3631 bp
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UTR
Exon/CDS
Intron
RLM00000012818

Sequence Viewer

Length: 1731 bp
ATGGACGACGACTTCGACATGGCAGGGCCCGGCGGCGAGATGATGGACGACTTTGACCTCCCGGACGAGGGCCCCGTTCTCAAGGTCGGCGAGGAGAAGGAGATCGGAAAGCAGGGCTTGAAGAAGAAGCTCCTCAAGGAAGGTGAAGGCTGGGAAACGCCCAAGAGCGGCGACGAGGTTGAAGTTTGTTGTTTGACTGTGAGCATTTCTTTACAATCTGCATTGTCTGGGGTCAAGTTTAATGCTTCTTGTACAGGACAAGTGATTAAAGGATGGGATGAAGGTATTAAAACAATGAAGAAAGGTGAGAATGCCCTTTTCACCATTCCTCCTGATATGGCTTATGGTGCGTCTGGATCTGCCCCAACCATCCCTCCAAATGCAACGTTGCAGTTCGATGTTGAATTGCTATCGTGGACCAGTGTAAACGACATAACCAAGGATGGTGGAATTATTAAGAAGGTTTTGAAAGAGGGAGAAAAATGGGAGAACCCAAAAGACCTTGATGAAGTCATAGTTAAATTTGAGGCCCGGCTCGAAGATAAAACACTTGTAGCAAAATCTGACACCGTGGAATTCACTGTCAAAGAGGGTTACTTCTGTCCTGCATTGGCAAAGGCTGTTAAAACAATGAAGAAGAGCGAAAAAGTATTGTTAACGGTGAAACCACAATATGGATTTGGGGACAAGGGTAAGCCTGCATCTGGTGATGAGGGTGCTGTTCCTCCAAATGCAACTCTTCATATTACTCTAGAGTTGGTATCGTGGAGAACAGTCTCAGAACTGACAGATGACAAGAAAGTTATTAAGAAGATCCTAAAAGAAGGGGAAGGGTATGAGCGTCCAAATGAAGGAGCTGTTGTTACAGTGAAATTGATTGGAAAGTTGCAAGATGGTAAGGAATTTTTAAAGAAAGGTCATGGTGAAGGAGAAGAACCATTTGAGTTCAAGACAGATGAGGAGCAAGTCATTGAGGGGCTTGATAGAGCTGTAGTGACAATGAAGAAGGGTGAGATAGCTCTTGTGATTATAGCCCCTGAGTATGGATTTGGCTCGTCAGAGTCCCAGCAGGAGTTGGCAGTCGTGCCTCCTAATTCCACCCTCTATTATGAGGTCGAGCTTGTATCTTTTATCAAGGTGGCCTTCCCAGTCTCTTTTGTTTTAATCATTTTTGTATCCTCCTTTCCCCAGGACAAGGAATCATGGGACATGAATACTCCGGAGAAAATTGAGGCTGCTGGTAAGAAGAAGGAAGAAGGGAATGCTTTCTTTAAGGCTGGTAAATATGCAAAAGCTTCCAAGAGATATGAGAAGGCTGTGAAGTACATCGAGTTTGATTCGGGTTTTGCTGACGAGGAGAAAAAACAGGCTAAGGTGTTGAAGGTTGCTTGCAATCTCAATGATGCTGCTTGCAAATTGAAGCTGAAAGAGTACAAACAGGCTGAAAAGCTGTGTACCAAGGTGTTGGAGCTTGAGGGTAAGAATGTAAAGGCCCTGTACAGAAGAGCTCAGGCATATATCCAGCTGGCTGATTTGGATTTGGCTGAGCTTGACATCAAGAAAGCTCTTGAAATAGACCCTAACAACAGGGATGTGAAGCTGGAGTACAAAACTTTGAAGGAGAAGATGAAAGAATTCAATAAAAAGGAGGCAAAGTTCTATGGCAACATGTTTGCTAAACTGACTAAAAATTCCAATAAGGATGCTGAACCAATGAGCGTAGACAGCTAG

Protein Analysis

577

Amino Acids

63.89

Weight (kDa)

5.32

Isoelectric Point (pI)

28.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 53 - 137 5.9e-20 FKBP-type peptidyl-prolyl cis-trans isomerase
FKBP_C PF00254 163 - 254 1.2e-16 FKBP-type peptidyl-prolyl cis-trans isomerase
FKBP_C PF00254 279 - 375 7e-24 FKBP-type peptidyl-prolyl cis-trans isomerase
TPR_19 PF14559 473 - 532 6.7e-06 Tetratricopeptide repeat
TPR_1 PF00515 496 - 529 4.4e-07 Tetratricopeptide repeat
TPR_8 PF13181 497 - 529 5.2e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 674
AccBSI CCGCTC 1 cut(s) 168
AccI GTMKAC 1 cut(s) 1722
AccIII TCCGGA 1 cut(s) 1219
AciI CCGC 2 cut(s) 33, 168
AclI AACGTT 1 cut(s) 386
AclWI GGATC 2 cut(s) 364, 808
AcsI RAATTY 5 cut(s) 521, 575, 902, 1634, 1690
AfaI GTAC 6 cut(s) 253, 1325, 1433, 1456, 1499, 1607
AfiI CCNNNNNNNGG 8 cut(s) 67, 68, 167, 674, 704, 851, 1043, 1195
AflIII ACRYGT 1 cut(s) 1668
AjnI CCWGG 1 cut(s) 1188
AloI GAACNNNNNNTCC 2 cut(s) 1640, 1672
Alw21I GWGCWC 1 cut(s) 1510
Alw26I GTCTC 2 cut(s) 781, 1156
AlwI GGATC 2 cut(s) 364, 808
Aor13HI TCCGGA 1 cut(s) 1219
AoxI GGCC 5 cut(s) 26, 70, 528, 1140, 1491
ApaI GGGCCC 2 cut(s) 30, 74
ApeKI GCWGC 2 cut(s) 1235, 1406
ApoI RAATTY 5 cut(s) 521, 575, 902, 1634, 1690
ArsI GACNNNNNNTTYG 1 cut(s) 28
Asp700I GAANNNNTTC 2 cut(s) 1265, 1634
AspS9I GGNCC 7 cut(s) 26, 27, 70, 71, 417, 529, 1492
AsuC2I CCSGG 3 cut(s) 30, 62, 532
AsuHPI GGTGA 7 cut(s) 155, 313, 317, 673, 719, 935, 1022
AvaII GGWCC 1 cut(s) 417
BaeGI GKGCMC 2 cut(s) 30, 74
BanII GRGCYC 3 cut(s) 30, 74, 1510
BarI GAAGNNNNNNTAC 2 cut(s) 1589, 1621
Bbv12I GWGCWC 1 cut(s) 1510
BbvI GCAGC 2 cut(s) 1222, 1393
BccI CCATC 5 cut(s) 37, 267, 377, 437, 887
BciT130I CCWGG 1 cut(s) 1190
BciVI GTATCC 1 cut(s) 1186
BcnI CCSGG 3 cut(s) 30, 62, 532
BcoDI GTCTC 2 cut(s) 781, 1156
BfaI CTAG 2 cut(s) 752, 1729
BfmI CTRYAG 1 cut(s) 990
BfuI GTATCC 1 cut(s) 1186
BisI GCNGC 4 cut(s) 34, 169, 1236, 1407
BlpI GCTNAGC 1 cut(s) 1545
BlsI GCNGC 4 cut(s) 35, 170, 1237, 1408
Bme1390I CCNGG 4 cut(s) 30, 62, 532, 1190
Bme18I GGWCC 1 cut(s) 417
BmgT120I GGNCC 7 cut(s) 26, 27, 70, 71, 417, 529, 1492
BmiI GGNNCC 3 cut(s) 28, 72, 73
BmrFI CCNGG 4 cut(s) 30, 62, 532, 1190
BmrI ACTGGG 1 cut(s) 1142
BmsI GCATC 3 cut(s) 710, 1393, 1693
BmuI ACTGGG 1 cut(s) 1142
BpmI CTGGAG 1 cut(s) 1622
Bpu10I CCTNAGC 2 cut(s) 1371, 1509
Bpu1102I GCTNAGC 1 cut(s) 1545
BpuEI CTTGAG 3 cut(s) 65, 119, 1493
BpuMI CCSGG 3 cut(s) 30, 62, 532
BsaJI CCNNGG 4 cut(s) 438, 570, 1188, 1458
BsaWI WCCGGW 1 cut(s) 1219
BsaXI ACNNNNNCTCC 8 cut(s) 313, 343, 358, 388, 846, 876, 1640, 1670
Bsc4I CCNNNNNNNGG 8 cut(s) 67, 68, 167, 674, 704, 851, 1043, 1195
Bse1I ACTGG 2 cut(s) 420, 1148
BseAI TCCGGA 1 cut(s) 1219
BseBI CCWGG 1 cut(s) 1190
BseDI CCNNGG 4 cut(s) 438, 570, 1188, 1458
BseGI GGATG 6 cut(s) 278, 283, 369, 448, 1597, 1708
BseLI CCNNNNNNNGG 8 cut(s) 67, 68, 167, 674, 704, 851, 1043, 1195
BseMII CTCAG 4 cut(s) 792, 1029, 1523, 1536
BseNI ACTGG 2 cut(s) 420, 1148
BseRI GAGGAG 4 cut(s) 107, 122, 974, 1370
BseSI GKGCMC 2 cut(s) 30, 74
BseXI GCAGC 2 cut(s) 1222, 1393
BseYI CCCAGC 2 cut(s) 150, 1065
BshFI GGCC 5 cut(s) 28, 72, 530, 1142, 1493
BsiHKAI GWGCWC 1 cut(s) 1510
BsiSI CCGG 4 cut(s) 30, 62, 532, 1220
BslFI GGGAC 3 cut(s) 698, 1048, 1220
BslI CCNNNNNNNGG 8 cut(s) 67, 68, 167, 674, 704, 851, 1043, 1195
BsmAI GTCTC 2 cut(s) 781, 1156
BsmFI GGGAC 3 cut(s) 698, 1048, 1220
BsmI GAATGC 2 cut(s) 316, 1267
BsnI GGCC 5 cut(s) 28, 72, 530, 1142, 1493
Bsp120I GGGCCC 2 cut(s) 26, 70
Bsp1286I GDGCHC 3 cut(s) 30, 74, 1510
Bsp13I TCCGGA 1 cut(s) 1219
Bsp1407I TGTACA 2 cut(s) 251, 1497
Bsp143I GATC 3 cut(s) 102, 356, 813
Bsp1720I GCTNAGC 1 cut(s) 1545
BspACI CCGC 2 cut(s) 33, 168
BspANI GGCC 5 cut(s) 28, 72, 530, 1142, 1493
BspCNI CTCAG 4 cut(s) 791, 1030, 1522, 1537
BspEI TCCGGA 1 cut(s) 1219
BspLI GGNNCC 3 cut(s) 28, 72, 73
BspPI GGATC 2 cut(s) 364, 808
BspQI GCTCTTC 2 cut(s) 632, 1498
BsrBI CCGCTC 1 cut(s) 168
BsrGI TGTACA 2 cut(s) 251, 1497
BsrI ACTGG 2 cut(s) 420, 1148
BssECI CCNNGG 4 cut(s) 438, 570, 1188, 1458
BssMI GATC 3 cut(s) 102, 356, 813
BssT1I CCWWGG 2 cut(s) 438, 1458
Bst2UI CCWGG 1 cut(s) 1190
Bst4CI ACNGT 6 cut(s) 199, 571, 583, 661, 775, 868
Bst6I CTCTTC 3 cut(s) 632, 744, 1498
BstAUI TGTACA 2 cut(s) 251, 1497
BstC8I GCNNGC 4 cut(s) 699, 1390, 1411, 1527
BstDEI CTNAG 5 cut(s) 778, 1038, 1371, 1509, 1545
BstDSI CCRYGG 1 cut(s) 570
BstF5I GGATG 6 cut(s) 278, 283, 369, 448, 1597, 1708
BstKTI GATC 3 cut(s) 105, 359, 816
BstMAI GTCTC 2 cut(s) 781, 1156
BstMBI GATC 3 cut(s) 102, 356, 813
BstMWI GCNNNNNNNGC 2 cut(s) 347, 1725
BstNI CCWGG 1 cut(s) 1190
BstNSI RCATGY 1 cut(s) 1672
BstSCI CCNGG 4 cut(s) 28, 60, 530, 1188
BstSFI CTRYAG 1 cut(s) 990
BstSLI GKGCMC 2 cut(s) 30, 74
BstV1I GCAGC 2 cut(s) 1222, 1393
BstX2I RGATCY 2 cut(s) 356, 813
BstXI CCANNNNNNTGG 1 cut(s) 1465
BstYI RGATCY 2 cut(s) 356, 813
BsuI GTATCC 1 cut(s) 1186
BsuRI GGCC 5 cut(s) 28, 72, 530, 1142, 1493
BtgI CCRYGG 1 cut(s) 570
BtsCI GGATG 6 cut(s) 278, 283, 369, 448, 1597, 1708
BtsIMutI CAGTG 3 cut(s) 427, 579, 873
Cac8I GCNNGC 4 cut(s) 699, 1390, 1411, 1527
Cfr13I GGNCC 7 cut(s) 26, 27, 70, 71, 417, 529, 1492
CseI GACGC 2 cut(s) 339, 830
Csp6I GTAC 6 cut(s) 252, 1324, 1432, 1455, 1498, 1606
CspCI CAANNNNNGTGG 2 cut(s) 427, 462
CviAII CATG 5 cut(s) 19, 920, 1203, 1210, 1669
CviQI GTAC 6 cut(s) 252, 1324, 1432, 1455, 1498, 1606
DdeI CTNAG 5 cut(s) 778, 1038, 1371, 1509, 1545
DpnI GATC 3 cut(s) 104, 358, 815
DpnII GATC 3 cut(s) 102, 356, 813
DraI TTTAAA 1 cut(s) 909
Eam1104I CTCTTC 3 cut(s) 632, 744, 1498
EarI CTCTTC 3 cut(s) 632, 744, 1498
Ecl136II GAGCTC 1 cut(s) 1508
Eco130I CCWWGG 2 cut(s) 438, 1458
Eco24I GRGCYC 3 cut(s) 30, 74, 1510
Eco47I GGWCC 1 cut(s) 417
Eco53kI GAGCTC 1 cut(s) 1508
EcoICRI GAGCTC 1 cut(s) 1508
EcoO109I RGGNCCY 4 cut(s) 26, 70, 71, 1492
EcoRI GAATTC 2 cut(s) 575, 1634
EcoRII CCWGG 1 cut(s) 1188
EcoT14I CCWWGG 2 cut(s) 438, 1458
EcoT38I GRGCYC 3 cut(s) 30, 74, 1510
ErhI CCWWGG 2 cut(s) 438, 1458
FaeI CATG 5 cut(s) 22, 923, 1206, 1213, 1672
FalI AAGNNNNNCTT 4 cut(s) 101, 133, 1127, 1159
FaqI GGGAC 3 cut(s) 698, 1048, 1220
FatI CATG 5 cut(s) 18, 919, 1202, 1209, 1668
FblI GTMKAC 1 cut(s) 1722
Fnu4HI GCNGC 4 cut(s) 34, 169, 1236, 1407
FokI GGATG 6 cut(s) 285, 290, 356, 455, 1604, 1715
FriOI GRGCYC 3 cut(s) 30, 74, 1510
Fsp4HI GCNGC 4 cut(s) 34, 169, 1236, 1407
FspBI CTAG 2 cut(s) 752, 1729
GluI GCNGC 4 cut(s) 34, 169, 1236, 1407
GsaI CCCAGC 2 cut(s) 154, 1069
GsuI CTGGAG 1 cut(s) 1622
HaeIII GGCC 5 cut(s) 28, 72, 530, 1142, 1493
HapII CCGG 4 cut(s) 30, 62, 532, 1220
HgaI GACGC 2 cut(s) 339, 830
Hin1II CATG 5 cut(s) 22, 923, 1206, 1213, 1672
HincII GTYRAC 1 cut(s) 657
HindII GTYRAC 1 cut(s) 657
HindIII AAGCTT 1 cut(s) 1293
HinfI GANTC 3 cut(s) 1061, 1199, 1337
HpaI GTTAAC 1 cut(s) 657
HpaII CCGG 4 cut(s) 30, 62, 532, 1220
HphI GGTGA 7 cut(s) 155, 313, 317, 673, 719, 935, 1022
Hpy166II GTNNAC 5 cut(s) 417, 427, 657, 1455, 1723
Hpy188I TCNGA 4 cut(s) 107, 565, 781, 1060
Hpy188III TCNNGA 7 cut(s) 332, 354, 752, 949, 1220, 1558, 1568
Hpy8I GTNNAC 5 cut(s) 417, 427, 657, 1455, 1723
Hpy99I CGWCG 2 cut(s) 11, 176
HpyCH4III ACNGT 6 cut(s) 199, 571, 583, 661, 775, 868
HpyCH4IV ACGT 1 cut(s) 386
HpyF10VI GCNNNNNNNGC 2 cut(s) 347, 1725
HpyF3I CTNAG 5 cut(s) 778, 1038, 1371, 1509, 1545
HpySE526I ACGT 1 cut(s) 386
Hsp92II CATG 5 cut(s) 22, 923, 1206, 1213, 1672
Kpn2I TCCGGA 1 cut(s) 1219
KspAI GTTAAC 1 cut(s) 657
Kzo9I GATC 3 cut(s) 102, 356, 813
LguI GCTCTTC 2 cut(s) 632, 1498
LmnI GCTCC 4 cut(s) 135, 854, 961, 1468
Lsp1109I GCAGC 2 cut(s) 1222, 1393
LweI GCATC 3 cut(s) 710, 1393, 1693
MaeI CTAG 2 cut(s) 752, 1729
MaeII ACGT 1 cut(s) 386
MaeIII GTNAC 3 cut(s) 593, 862, 994
MalI GATC 3 cut(s) 104, 358, 815
MbiI CCGCTC 1 cut(s) 168
MboI GATC 3 cut(s) 102, 356, 813
MflI RGATCY 2 cut(s) 356, 813
MhlI GDGCHC 3 cut(s) 30, 74, 1510
MlyI GAGTC 1 cut(s) 1070
MmeI TCCRAC 1 cut(s) 1446
MroI TCCGGA 1 cut(s) 1219
MroXI GAANNNNTTC 2 cut(s) 1265, 1634
MspA1I CMGCKG 1 cut(s) 1525
MspI CCGG 4 cut(s) 30, 62, 532, 1220
MspR9I CCNGG 4 cut(s) 30, 62, 532, 1190
Mva1269I GAATGC 2 cut(s) 316, 1267
MvaI CCWGG 1 cut(s) 1190
MwoI GCNNNNNNNGC 2 cut(s) 347, 1725
NciI CCSGG 3 cut(s) 30, 62, 532
NdeII GATC 3 cut(s) 102, 356, 813
NlaIII CATG 5 cut(s) 22, 923, 1206, 1213, 1672
NlaIV GGNNCC 3 cut(s) 28, 72, 73
NmuCI GTSAC 1 cut(s) 994
NspI RCATGY 1 cut(s) 1672
PciI ACATGT 1 cut(s) 1668
PciSI GCTCTTC 2 cut(s) 632, 1498
PcsI WCGNNNNNNNCGW 2 cut(s) 12, 72
PctI GAATGC 2 cut(s) 316, 1267
PdmI GAANNNNTTC 2 cut(s) 1265, 1634
PfeI GAWTC 2 cut(s) 1199, 1337
PflMI CCANNNNNTGG 1 cut(s) 674
PfoI TCCNGGA 1 cut(s) 60
PkrI GCNGC 4 cut(s) 35, 170, 1237, 1408
PleI GAGTC 1 cut(s) 1069
PpsI GAGTC 1 cut(s) 1069
PscI ACATGT 1 cut(s) 1668
Psp124BI GAGCTC 1 cut(s) 1510
Psp1406I AACGTT 1 cut(s) 386
Psp6I CCWGG 1 cut(s) 1188
PspFI CCCAGC 2 cut(s) 150, 1065
PspGI CCWGG 1 cut(s) 1188
PspN4I GGNNCC 3 cut(s) 28, 72, 73
PspOMI GGGCCC 2 cut(s) 26, 70
PspPI GGNCC 7 cut(s) 26, 27, 70, 71, 417, 529, 1492
PsuI RGATCY 2 cut(s) 356, 813
PvuII CAGCTG 1 cut(s) 1525
RsaI GTAC 6 cut(s) 253, 1325, 1433, 1456, 1499, 1607
RsaNI GTAC 6 cut(s) 252, 1324, 1432, 1455, 1498, 1606
SacI GAGCTC 1 cut(s) 1510
SapI GCTCTTC 2 cut(s) 632, 1498
SatI GCNGC 4 cut(s) 34, 169, 1236, 1407
Sau3AI GATC 3 cut(s) 102, 356, 813
Sau96I GGNCC 7 cut(s) 26, 27, 70, 71, 417, 529, 1492
SchI GAGTC 1 cut(s) 1070
ScrFI CCNGG 4 cut(s) 30, 62, 532, 1190
SduI GDGCHC 3 cut(s) 30, 74, 1510
SfaNI GCATC 3 cut(s) 710, 1393, 1693
SfcI CTRYAG 1 cut(s) 990
SinI GGWCC 1 cut(s) 417
SmlI CTYRAG 3 cut(s) 80, 134, 1472
SmoI CTYRAG 3 cut(s) 80, 134, 1472
SsiI CCGC 2 cut(s) 33, 168
SspMI CTAG 2 cut(s) 752, 1729
SstI GAGCTC 1 cut(s) 1510
StyD4I CCNGG 4 cut(s) 28, 60, 530, 1188
StyI CCWWGG 2 cut(s) 438, 1458
TaaI ACNGT 6 cut(s) 199, 571, 583, 661, 775, 868
TaiI ACGT 1 cut(s) 389
TaqI TCGA 5 cut(s) 15, 396, 537, 1116, 1329
TatI WGTACW 5 cut(s) 251, 1323, 1431, 1497, 1605
TauI GCSGC 2 cut(s) 36, 171
TfiI GAWTC 2 cut(s) 1199, 1337
TscAI CASTG 3 cut(s) 427, 586, 873
TseFI GTSAC 1 cut(s) 994
TseI GCWGC 2 cut(s) 1235, 1406
Tsp45I GTSAC 1 cut(s) 994
TspDTI ATGAA 9 cut(s) 294, 311, 522, 647, 731, 864, 1016, 1226, 1643
TspRI CASTG 3 cut(s) 427, 586, 873
Van91I CCANNNNNTGG 1 cut(s) 674
VpaK11BI GGWCC 1 cut(s) 417
XapI RAATTY 5 cut(s) 521, 575, 902, 1634, 1690
XbaI TCTAGA 1 cut(s) 751
XceI RCATGY 1 cut(s) 1672
XmiI GTMKAC 1 cut(s) 1722
XmnI GAANNNNTTC 2 cut(s) 1265, 1634
XspI CTAG 2 cut(s) 752, 1729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.