Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003751

Physical Location & Seq

Genomic Coordinates Forward (+)

28771449 .. 28778514

Gene Structure 7066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG174200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGTTGTGGCGGTGGAAGATGTGATTGAGGCGGAGGTGTGCGCTTGGTGGAAGGCTGGTTCGTCGTTTCTGGGTTGTCAGGTCTACGGAGCGGGGTGGAAACATCTGGGTTTGTCGTTTCTGGGTTGTCAGATCGACGGAGCTGGGCGGACAGATCGGGGGGATAGTGATGGAAGATTTTTGTTAGATGTGAGGGAGGAGCGTAATTTGTGGATAGAGTTCAATTCTGGGAGTCCTTATAGGCATCAGTTTCCTAGGTATTCAGAGATTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

91

Amino Acids

10.21

Weight (kDa)

5.0

Isoelectric Point (pI)

35.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25230 AT3G25230
fragaria_vesca	FvH4_2g18150 FvH4_2g18150 FvH4_2g18150
malus_domestica	MD05G1166200.v1.1 MD10G1156300.v1.1
prunus_persica	Prupe.8G194100_v2.0.a1
pyrus_communis	pycom05g15490 pycom10g13450
rosa_chinensis	RchiOBHm_Chr6g0283541 RchiOBHm_Chr7g0204881
rosa_laevigata	RLG00000003424 RLG00000012818
rosa_multiflora	Rmu_sc0005719.1_g000005 Rmu_sc0007194.1_g000004 Rmu_sc0031409.1_g000001 Rmu_sc0031410.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252700 Rroxscaffold_7G00185450
rosa_rugosa	Rorug06G0155300 Rorug06G0155400 Rorug06G0155500 Rorug06G0155600 Rorug07G0086300
rosa_samantha	Rh6AG267500 Rh6BG174200 Rh6BG270000 Rh6DG263400 Rh7AG217000 Rh7CG230200 Rh7DG224600
rosa_wichuraiana	Rw6G023160 Rw7G018810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	92
AccI	GTMKAC	1 cut(s)	84
AciI	CCGC	4 cut(s)	11, 32, 92, 148
AgsI	TTSAA	1 cut(s)	223
AloI	GAACNNNNNNTCC	2 cut(s)	43, 75
AluBI	AGCT	1 cut(s)	143
AluI	AGCT	1 cut(s)	143
AspA2I	CCTAGG	1 cut(s)	254
AspLEI	GCGC	1 cut(s)	44
AvrII	CCTAGG	1 cut(s)	254
BccI	CCATC	1 cut(s)	164
BfaI	CTAG	1 cut(s)	255
BlnI	CCTAGG	1 cut(s)	254
BmsI	GCATC	1 cut(s)	253
BsaJI	CCNNGG	1 cut(s)	254
BseDI	CCNNGG	1 cut(s)	254
BseRI	GAGGAG	1 cut(s)	212
BseYI	CCCAGC	1 cut(s)	143
Bsp143I	GATC	2 cut(s)	132, 154
BspACI	CCGC	4 cut(s)	11, 32, 92, 148
BsrBI	CCGCTC	1 cut(s)	92
BssECI	CCNNGG	1 cut(s)	254
BssMI	GATC	2 cut(s)	132, 154
BssT1I	CCWWGG	1 cut(s)	254
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	2 cut(s)	135, 157
BstMBI	GATC	2 cut(s)	132, 154
CfoI	GCGC	1 cut(s)	44
CviJI	RGCY	2 cut(s)	56, 143
CviKI_1	RGCY	2 cut(s)	56, 143
DpnI	GATC	2 cut(s)	134, 156
DpnII	GATC	2 cut(s)	132, 154
EciI	GGCGGA	2 cut(s)	47, 163
Eco130I	CCWWGG	1 cut(s)	254
EcoT14I	CCWWGG	1 cut(s)	254
ErhI	CCWWGG	1 cut(s)	254
FaiI	YATR	1 cut(s)	240
FauI	CCCGC	1 cut(s)	85
FblI	GTMKAC	1 cut(s)	84
FspBI	CTAG	1 cut(s)	255
GlaI	GCGC	1 cut(s)	43
GsaI	CCCAGC	1 cut(s)	147
HhaI	GCGC	1 cut(s)	44
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HinfI	GANTC	1 cut(s)	232
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	2 cut(s)	132, 265
Hpy8I	GTNNAC	1 cut(s)	85
Hpy99I	CGWCG	2 cut(s)	67, 140
HpyAV	CCTTC	1 cut(s)	46
HspAI	GCGC	1 cut(s)	42
Kzo9I	GATC	2 cut(s)	132, 154
LmnI	GCTCC	3 cut(s)	89, 140, 199
LpnPI	CCDG	7 cut(s)	42, 56, 65, 92, 107, 129, 213
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	1 cut(s)	255
MalI	GATC	2 cut(s)	134, 156
MbiI	CCGCTC	1 cut(s)	92
MboI	GATC	2 cut(s)	132, 154
MboII	GAAGA	2 cut(s)	29, 186
MluCI	AATT	2 cut(s)	205, 223
MlyI	GAGTC	1 cut(s)	241
MnlI	CCTC	4 cut(s)	22, 28, 186, 190
NdeII	GATC	2 cut(s)	132, 154
PleI	GAGTC	1 cut(s)	240
PpsI	GAGTC	1 cut(s)	240
PspFI	CCCAGC	1 cut(s)	143
Sau3AI	GATC	2 cut(s)	132, 154
SchI	GAGTC	1 cut(s)	241
SetI	ASST	4 cut(s)	39, 84, 145, 260
SfaNI	GCATC	1 cut(s)	253
Sse9I	AATT	2 cut(s)	205, 223
SsiI	CCGC	4 cut(s)	11, 32, 92, 148
SspMI	CTAG	1 cut(s)	255
StyI	CCWWGG	1 cut(s)	254
TaqI	TCGA	1 cut(s)	135
TasI	AATT	2 cut(s)	205, 223
TspGWI	ACGGA	2 cut(s)	102, 153
XmaJI	CCTAGG	1 cut(s)	254
XmiI	GTMKAC	1 cut(s)	84
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.