Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003751

Physical Location & Seq

Genomic Coordinates Reverse (-)

22228242 .. 22233582

Gene Structure 5341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0155300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGAGTTCGTCAGCCCTGAAGATCTTCGTTTAGATGGTCGTCGTCCCACGGAAATGAGGCAAATTCGAGCAGAGATTGGTGTTGTAGCCAAAGCCGACGGTTCTGCTATGTTTGAGATGGGTAACACCAAAGTTGTTGCTGCTGTTTATGGCCCTAGAGAGGTCCAAAATAGGAGCCAACAGCTGAATGCCAATGTGTTGGTGCGATGTGAATACACCATGGCAAATTTTAGTACCGGAGATCGGATGAGAAAACCGAAGGGTGATAGGAGATCCACAGAGATATCTCTAGTTATTCGCCAAACCATGGAAGAATGCATTTTGACAAACTTAATGCCTTGGTCTCAGATAGACATTTTTGTGCACGTTCTCCAAGCAGATGGAGGAACTAGATCTGCATGTATCAATGCTGCAACCCTGGCCCTTGCAGACGCTGGAATTCCAATGCGGGATATCGTTACTTCGTGCAGTGCTGGGTACCTTAATAGCACACCTCTACTTGATTTAAACTATATAGAAGATAGTGCTGGAGGCGCTGATGTCACTTTAGGAATTATGCCGAAGTTGGACAAAGTGACTCTTCTTCAGATGGATGCTAAGTTGTCGTTGGATACTGTTGAAAATGTAATGCAACTTGCAATCGAAGGCTGCAAGGCAGTTGCAGATTACATTAGAGAAATATTATTGGAGAACACAAAGCAATTGCAGTATCGTCGAGGAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0006457 GO:0006464 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010286 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0033554 GO:0034605 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051716 GO:0061077 GO:0070370 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04915 map04915

Pfam Domains

Protein Families

FKBP_C TPR_1 TPR_2 TPR_8

Protein Analysis

241

Amino Acids

26.61

Weight (kDa)

5.23

Isoelectric Point (pI)

42.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_PH	PF01138	18 - 148	6.3e-40	3' exoribonuclease family, domain 1
RNase_PH_C	PF03725	151 - 216	4.6e-13	3' exoribonuclease family, domain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25230 AT3G25230
fragaria_vesca	FvH4_2g18150 FvH4_2g18150 FvH4_2g18150
malus_domestica	MD05G1166200.v1.1 MD10G1156300.v1.1
prunus_persica	Prupe.8G194100_v2.0.a1
pyrus_communis	pycom05g15490 pycom10g13450
rosa_chinensis	RchiOBHm_Chr6g0283541 RchiOBHm_Chr7g0204881
rosa_laevigata	RLG00000003424 RLG00000012818
rosa_multiflora	Rmu_sc0005719.1_g000005 Rmu_sc0007194.1_g000004 Rmu_sc0031409.1_g000001 Rmu_sc0031410.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252700 Rroxscaffold_7G00185450
rosa_rugosa	Rorug06G0155300 Rorug06G0155400 Rorug06G0155500 Rorug06G0155600 Rorug07G0086300
rosa_samantha	Rh6AG267500 Rh6BG174200 Rh6BG270000 Rh6DG263400 Rh7AG217000 Rh7CG230200 Rh7DG224600
rosa_wichuraiana	Rw6G023160 Rw7G018810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	477
AccB1I	GGYRCC	1 cut(s)	477
AccB7I	CCANNNNNTGG	1 cut(s)	307
AciI	CCGC	1 cut(s)	448
AclWI	GGATC	1 cut(s)	267
AcsI	RAATTY	3 cut(s)	63, 226, 438
AcuI	CTGAAG	2 cut(s)	39, 569
AfaI	GTAC	2 cut(s)	235, 479
AfiI	CCNNNNNNNGG	3 cut(s)	160, 243, 307
AgsI	TTSAA	1 cut(s)	620
AjnI	CCWGG	1 cut(s)	417
AluBI	AGCT	1 cut(s)	184
AluI	AGCT	1 cut(s)	184
Alw21I	GWGCWC	1 cut(s)	366
Alw26I	GTCTC	1 cut(s)	348
Alw44I	GTGCAC	1 cut(s)	362
AlwI	GGATC	1 cut(s)	267
AlwNI	CAGNNNCTG	1 cut(s)	434
AoxI	GGCC	2 cut(s)	151, 420
ApaLI	GTGCAC	1 cut(s)	362
ApeKI	GCWGC	3 cut(s)	140, 410, 648
ApoI	RAATTY	3 cut(s)	63, 226, 438
Asp700I	GAANNNNTTC	1 cut(s)	24
Asp718I	GGTACC	1 cut(s)	477
AspLEI	GCGC	1 cut(s)	536
AspS9I	GGNCC	3 cut(s)	152, 163, 421
AsuHPI	GGTGA	1 cut(s)	275
AvaII	GGWCC	1 cut(s)	163
BaeGI	GKGCMC	1 cut(s)	366
BanI	GGYRCC	1 cut(s)	477
Bbv12I	GWGCWC	1 cut(s)	366
BbvI	GCAGC	3 cut(s)	127, 397, 635
BccI	CCATC	4 cut(s)	29, 112, 374, 583
BcgI	CGANNNNNNTGC	3 cut(s)	86, 120, 695
BciT130I	CCWGG	1 cut(s)	419
BciVI	GTATCC	1 cut(s)	604
BcoDI	GTCTC	1 cut(s)	348
BfaI	CTAG	3 cut(s)	156, 290, 390
BfoI	RGCGCY	1 cut(s)	537
BfuI	GTATCC	1 cut(s)	604
BglII	AGATCT	2 cut(s)	22, 392
BisI	GCNGC	3 cut(s)	141, 411, 649
BlsI	GCNGC	3 cut(s)	142, 412, 650
Bme1390I	CCNGG	1 cut(s)	419
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	3 cut(s)	152, 163, 421
BmiI	GGNNCC	2 cut(s)	176, 479
BmrFI	CCNGG	1 cut(s)	419
BmsI	GCATC	1 cut(s)	583
BpmI	CTGGAG	1 cut(s)	549
BsaI	GGTCTC	1 cut(s)	348
BsaJI	CCNNGG	5 cut(s)	48, 219, 306, 338, 417
BsaWI	WCCGGW	1 cut(s)	236
Bsc4I	CCNNNNNNNGG	3 cut(s)	160, 243, 307
BseBI	CCWGG	1 cut(s)	419
BseDI	CCNNGG	5 cut(s)	48, 219, 306, 338, 417
BseGI	GGATG	2 cut(s)	252, 598
BseLI	CCNNNNNNNGG	3 cut(s)	160, 243, 307
BseMII	CTCAG	1 cut(s)	359
BseSI	GKGCMC	1 cut(s)	366
BseXI	GCAGC	3 cut(s)	127, 397, 635
BseYI	CCCAGC	1 cut(s)	473
BsgI	GTGCAG	1 cut(s)	487
BshFI	GGCC	2 cut(s)	153, 422
BshNI	GGYRCC	1 cut(s)	477
BsiHKAI	GWGCWC	1 cut(s)	366
BsiSI	CCGG	1 cut(s)	237
BslFI	GGGAC	1 cut(s)	30
BslI	CCNNNNNNNGG	3 cut(s)	160, 243, 307
BsmAI	GTCTC	1 cut(s)	348
BsmFI	GGGAC	1 cut(s)	30
BsmI	GAATGC	2 cut(s)	193, 320
BsnI	GGCC	2 cut(s)	153, 422
Bso31I	GGTCTC	1 cut(s)	348
Bsp1286I	GDGCHC	1 cut(s)	366
Bsp143I	GATC	4 cut(s)	22, 241, 272, 392
Bsp19I	CCATGG	2 cut(s)	219, 306
BspACI	CCGC	1 cut(s)	448
BspANI	GGCC	2 cut(s)	153, 422
BspCNI	CTCAG	1 cut(s)	358
BspLI	GGNNCC	2 cut(s)	176, 479
BspPI	GGATC	1 cut(s)	267
BspT107I	GGYRCC	1 cut(s)	477
BspTNI	GGTCTC	1 cut(s)	348
BssECI	CCNNGG	5 cut(s)	48, 219, 306, 338, 417
BssMI	GATC	4 cut(s)	22, 241, 272, 392
BssT1I	CCWWGG	3 cut(s)	219, 306, 338
Bst2UI	CCWGG	1 cut(s)	419
Bst4CI	ACNGT	2 cut(s)	101, 616
Bst6I	CTCTTC	1 cut(s)	585
BstDEI	CTNAG	2 cut(s)	345, 597
BstDSI	CCRYGG	3 cut(s)	48, 219, 306
BstF5I	GGATG	2 cut(s)	252, 598
BstH2I	RGCGCY	1 cut(s)	537
BstHHI	GCGC	1 cut(s)	536
BstKTI	GATC	4 cut(s)	25, 244, 275, 395
BstMAI	GTCTC	1 cut(s)	348
BstMBI	GATC	4 cut(s)	22, 241, 272, 392
BstMWI	GCNNNNNNNGC	2 cut(s)	419, 533
BstNI	CCWGG	1 cut(s)	419
BstNSI	RCATGY	1 cut(s)	402
BstSCI	CCNGG	1 cut(s)	417
BstSLI	GKGCMC	1 cut(s)	366
BstV1I	GCAGC	3 cut(s)	127, 397, 635
BstX2I	RGATCY	3 cut(s)	22, 272, 392
BstXI	CCANNNNNNTGG	2 cut(s)	199, 380
BstYI	RGATCY	3 cut(s)	22, 272, 392
BsuI	GTATCC	1 cut(s)	604
BsuRI	GGCC	2 cut(s)	153, 422
BtgI	CCRYGG	3 cut(s)	48, 219, 306
BtgZI	GCGATG	1 cut(s)	220
BtsCI	GGATG	2 cut(s)	252, 598
BtsI	GCAGTG	1 cut(s)	475
BtsIMutI	CAGTG	1 cut(s)	475
CaiI	CAGNNNCTG	1 cut(s)	434
CfoI	GCGC	1 cut(s)	536
Cfr13I	GGNCC	3 cut(s)	152, 163, 421
CseI	GACGC	1 cut(s)	440
Csp6I	GTAC	2 cut(s)	234, 478
CviAII	CATG	3 cut(s)	220, 307, 399
CviJI	RGCY	8 cut(s)	15, 89, 95, 153, 177, 184, 422, 648
CviKI_1	RGCY	8 cut(s)	15, 89, 95, 153, 177, 184, 422, 648
CviQI	GTAC	2 cut(s)	234, 478
DdeI	CTNAG	2 cut(s)	345, 597
DpnI	GATC	4 cut(s)	24, 243, 274, 394
DpnII	GATC	4 cut(s)	22, 241, 272, 392
DraI	TTTAAA	1 cut(s)	507
Eam1104I	CTCTTC	1 cut(s)	585
EarI	CTCTTC	1 cut(s)	585
Eco130I	CCWWGG	3 cut(s)	219, 306, 338
Eco31I	GGTCTC	1 cut(s)	348
Eco32I	GATATC	2 cut(s)	285, 454
Eco47I	GGWCC	1 cut(s)	163
Eco57I	CTGAAG	2 cut(s)	39, 569
EcoRI	GAATTC	1 cut(s)	438
EcoRII	CCWGG	1 cut(s)	417
EcoRV	GATATC	2 cut(s)	285, 454
EcoT14I	CCWWGG	3 cut(s)	219, 306, 338
EcoT22I	ATGCAT	1 cut(s)	320
ErhI	CCWWGG	3 cut(s)	219, 306, 338
FaeI	CATG	3 cut(s)	223, 310, 402
FaiI	YATR	9 cut(s)	110, 150, 221, 308, 400, 513, 515, 557, 724
FalI	AAGNNNNNCTT	2 cut(s)	564, 596
FaqI	GGGAC	1 cut(s)	30
FatI	CATG	3 cut(s)	219, 306, 398
FauI	CCCGC	1 cut(s)	441
Fnu4HI	GCNGC	3 cut(s)	141, 411, 649
FokI	GGATG	2 cut(s)	259, 605
Fsp4HI	GCNGC	3 cut(s)	141, 411, 649
FspBI	CTAG	3 cut(s)	156, 290, 390
GlaI	GCGC	1 cut(s)	535
GluI	GCNGC	3 cut(s)	141, 411, 649
GsaI	CCCAGC	1 cut(s)	477
GsuI	CTGGAG	1 cut(s)	549
HaeII	RGCGCY	1 cut(s)	537
HaeIII	GGCC	2 cut(s)	153, 422
HapII	CCGG	1 cut(s)	237
HgaI	GACGC	1 cut(s)	440
HhaI	GCGC	1 cut(s)	536
Hin1II	CATG	3 cut(s)	223, 310, 402
Hin6I	GCGC	1 cut(s)	534
HinP1I	GCGC	1 cut(s)	534
HinfI	GANTC	1 cut(s)	577
HpaII	CCGG	1 cut(s)	237
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	3 cut(s)	246, 348, 588
Hpy8I	GTNNAC	1 cut(s)	364
Hpy99I	CGWCG	3 cut(s)	45, 101, 717
HpyAV	CCTTC	2 cut(s)	253, 638
HpyCH4III	ACNGT	2 cut(s)	101, 616
HpyCH4IV	ACGT	1 cut(s)	366
HpyF10VI	GCNNNNNNNGC	2 cut(s)	419, 533
HpyF3I	CTNAG	2 cut(s)	345, 597
HpySE526I	ACGT	1 cut(s)	366
Hsp92II	CATG	3 cut(s)	223, 310, 402
HspAI	GCGC	1 cut(s)	534
KpnI	GGTACC	1 cut(s)	481
Kzo9I	GATC	4 cut(s)	22, 241, 272, 392
LmnI	GCTCC	1 cut(s)	174
LpnPI	CCDG	7 cut(s)	30, 250, 404, 420, 431, 459, 513
Lsp1109I	GCAGC	3 cut(s)	127, 397, 635
LweI	GCATC	1 cut(s)	583
MaeI	CTAG	3 cut(s)	156, 290, 390
MaeII	ACGT	1 cut(s)	366
MaeIII	GTNAC	4 cut(s)	122, 457, 541, 574
MalI	GATC	4 cut(s)	24, 243, 274, 394
MboI	GATC	4 cut(s)	22, 241, 272, 392
MboII	GAAGA	6 cut(s)	17, 32, 323, 530, 572, 575
MfeI	CAATTG	1 cut(s)	701
MflI	RGATCY	3 cut(s)	22, 272, 392
MhlI	GDGCHC	1 cut(s)	366
MluCI	AATT	5 cut(s)	63, 226, 438, 552, 701
MlyI	GAGTC	1 cut(s)	571
MmeI	TCCRAC	2 cut(s)	546, 588
MnlI	CCTC	6 cut(s)	51, 154, 377, 504, 524, 710
Mph1103I	ATGCAT	1 cut(s)	320
MroXI	GAANNNNTTC	1 cut(s)	24
MseI	TTAA	3 cut(s)	332, 483, 506
MslI	CAYNNNNRTG	2 cut(s)	53, 359
MspA1I	CMGCKG	1 cut(s)	184
MspI	CCGG	1 cut(s)	237
MspR9I	CCNGG	1 cut(s)	419
MunI	CAATTG	1 cut(s)	701
Mva1269I	GAATGC	2 cut(s)	193, 320
MvaI	CCWGG	1 cut(s)	419
MwoI	GCNNNNNNNGC	2 cut(s)	419, 533
NcoI	CCATGG	2 cut(s)	219, 306
NdeII	GATC	4 cut(s)	22, 241, 272, 392
NlaIII	CATG	3 cut(s)	223, 310, 402
NlaIV	GGNNCC	2 cut(s)	176, 479
NmuCI	GTSAC	2 cut(s)	541, 574
NsiI	ATGCAT	1 cut(s)	320
NspI	RCATGY	1 cut(s)	402
PctI	GAATGC	2 cut(s)	193, 320
PdmI	GAANNNNTTC	1 cut(s)	24
PflMI	CCANNNNNTGG	1 cut(s)	307
PkrI	GCNGC	3 cut(s)	142, 412, 650
PleI	GAGTC	1 cut(s)	571
PpsI	GAGTC	1 cut(s)	571
Psp6I	CCWGG	1 cut(s)	417
PspFI	CCCAGC	1 cut(s)	473
PspGI	CCWGG	1 cut(s)	417
PspN4I	GGNNCC	2 cut(s)	176, 479
PspPI	GGNCC	3 cut(s)	152, 163, 421
PstNI	CAGNNNCTG	1 cut(s)	434
PsuI	RGATCY	3 cut(s)	22, 272, 392
PvuII	CAGCTG	1 cut(s)	184
RsaI	GTAC	2 cut(s)	235, 479
RsaNI	GTAC	2 cut(s)	234, 478
RseI	CAYNNNNRTG	2 cut(s)	53, 359
SaqAI	TTAA	3 cut(s)	332, 483, 506
SatI	GCNGC	3 cut(s)	141, 411, 649
Sau3AI	GATC	4 cut(s)	22, 241, 272, 392
Sau96I	GGNCC	3 cut(s)	152, 163, 421
SchI	GAGTC	1 cut(s)	571
ScrFI	CCNGG	1 cut(s)	419
SduI	GDGCHC	1 cut(s)	366
SetI	ASST	5 cut(s)	165, 186, 369, 483, 496
SfaNI	GCATC	1 cut(s)	583
SinI	GGWCC	1 cut(s)	163
SmiMI	CAYNNNNRTG	2 cut(s)	53, 359
Sse9I	AATT	5 cut(s)	63, 226, 438, 552, 701
SsiI	CCGC	1 cut(s)	448
SspI	AATATT	1 cut(s)	681
SspMI	CTAG	3 cut(s)	156, 290, 390
StyD4I	CCNGG	1 cut(s)	417
StyI	CCWWGG	3 cut(s)	219, 306, 338
TaaI	ACNGT	2 cut(s)	101, 616
TaiI	ACGT	1 cut(s)	369
TaqI	TCGA	3 cut(s)	67, 642, 715
TasI	AATT	5 cut(s)	63, 226, 438, 552, 701
Tru1I	TTAA	3 cut(s)	332, 483, 506
Tru9I	TTAA	3 cut(s)	332, 483, 506
TscAI	CASTG	1 cut(s)	475
TseFI	GTSAC	2 cut(s)	541, 574
TseI	GCWGC	3 cut(s)	140, 410, 648
Tsp45I	GTSAC	2 cut(s)	541, 574
TspGWI	ACGGA	1 cut(s)	65
TspRI	CASTG	1 cut(s)	475
Van91I	CCANNNNNTGG	1 cut(s)	307
VneI	GTGCAC	1 cut(s)	362
VpaK11BI	GGWCC	1 cut(s)	163
XapI	RAATTY	3 cut(s)	63, 226, 438
XceI	RCATGY	1 cut(s)	402
XmnI	GAANNNNTTC	1 cut(s)	24
XspI	CTAG	3 cut(s)	156, 290, 390
Zsp2I	ATGCAT	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.