Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003751

Physical Location & Seq

Genomic Coordinates Reverse (-)

46036463 .. 46040319

Gene Structure 3857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG267500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

ATGAAGAAAGGTGAGAATGCCCTTTTCACCATTCCTCCTGATATGGCTTATGGTGCGTCTGGATCTCCCCCAACCATCCCTCCAAATGCAACGTTGCAGTTCGATGTTGAATTGCTATCGTGGACCAGTGTAAACGACATAACCAAGGATGGTGGAATTATTAAGAAGGTTTTGAAAGAGGGAGAAAAATGGGAGAACCCAAAAGACCTTGATGAAGTCATAGTTAAATTTGAGGCCCAGCTCGAAGATGAAACACTTGTAGCAAAATCTGACACCGTCGAATTCACTGTCAAAGAGGGTTACTTCTGTCCTGCATTGGCAAAGGCAGTTAAAACAATGAAGAAGAGCGAAAAAGTATTGTTGACGGTGAAACCACAATATGGATTTGGGGACAAGGGTAAGCCTGCATCTGGTGATGAGGGTGCTGTTCCTCCAAATGCAACTCTTCATATTACTCTAGAGTTGGTATCGTGGAGAACAGTCTCAGAACTGACAGATGACAAGAAAGTTATTAAGAAGATCCTAAAAGAAGGGGAAGGATATGAGCGTCCAAATGAAGGAGCTGTTGTTACAGTGAAATTGATTGGAAAGTTGCAAGATGGTAAGGAATTTTTAAAGAAAGGTCATGGTGAAGGAGAAGAACCATTTGAGTTCAAGACAGATGAGGAGCGAGTCATTGAGGGGCTTGATAGAGCTGTAGTGACAATGAAGAAGGGTGAGATAGCTCTTGTGATTATAGCCCCTGAGTATGGATTTGGCTCGTCAGAGTCCCAGCAGGAGTTGGCAGTGGTGCCTCCTAATTCCACCCTCTATTATGAGGTCGAGCTTGTATCTTTTGTCAAGGACAAGGAATCATGGGACATGAATACTCCGGAGAAAATTGAGGCTGCTGGTAAGAAGAAGGAAGAAGGGAATGCTTTCTTTAAGGCTGGTAAATATGCAAAAGCTTCCAAGAGATATGAGAAGGCTGTGAAGTACATCGAGTATGATTCGGCTTTTGCTGACGAGGAGAAAAAACAGGCTAAGGTGTTGAAGGTTGCTTGCAATCTCAATGATGCTGCTTGCAAATTGAAGCTGAAAGAGTACAAACAGGCTGAAAAGCTGTGTACCAAGGTGTTGGATCTTGAGGGTAAGAATGTAAAGGCCCTGTACAGAAGAGCTCAGGCATATATCCAGCTGGCTGATTTGGATTTGGCTGAGCTTGACATCAAGAAAGCTCTTGAAATAGACCCTAACAACAGGGATGTGAAGCTGGAGTACAAAACTTTGAAGGAGAAGATGAAAGAACTCAATAAAAAGGAGGCAAAGTTCTATGGCAACATGTTTGCTAAACTGACTAAAAATTCCAATAAGGATGCTGAACCAATGAGCGTAGACAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0006457 GO:0006464 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010286 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0033554 GO:0034605 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051716 GO:0061077 GO:0070370 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04915 map04915

Pfam Domains

Protein Families

FKBP_C TPR_1 TPR_2 TPR_8

Protein Analysis

460

Amino Acids

51.4

Weight (kDa)

5.93

Isoelectric Point (pI)

28.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	1 - 39	2e-11	FKBP-type peptidyl-prolyl cis-trans isomerase
FKBP_C	PF00254	65 - 156	1.6e-16	FKBP-type peptidyl-prolyl cis-trans isomerase
FKBP_C	PF00254	181 - 277	1.3e-23	FKBP-type peptidyl-prolyl cis-trans isomerase
TPR_19	PF14559	357 - 416	5.4e-06	Tetratricopeptide repeat
TPR_1	PF00515	380 - 413	3.3e-07	Tetratricopeptide repeat
TPR_8	PF13181	381 - 413	3.9e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25230 AT3G25230
fragaria_vesca	FvH4_2g18150 FvH4_2g18150 FvH4_2g18150
malus_domestica	MD05G1166200.v1.1 MD10G1156300.v1.1
prunus_persica	Prupe.8G194100_v2.0.a1
pyrus_communis	pycom05g15490 pycom10g13450
rosa_chinensis	RchiOBHm_Chr6g0283541 RchiOBHm_Chr7g0204881
rosa_laevigata	RLG00000003424 RLG00000012818
rosa_multiflora	Rmu_sc0005719.1_g000005 Rmu_sc0007194.1_g000004 Rmu_sc0031409.1_g000001 Rmu_sc0031410.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252700 Rroxscaffold_7G00185450
rosa_rugosa	Rorug06G0155300 Rorug06G0155400 Rorug06G0155500 Rorug06G0155600 Rorug07G0086300
rosa_samantha	Rh6AG267500 Rh6BG174200 Rh6BG270000 Rh6DG263400 Rh7AG217000 Rh7CG230200 Rh7DG224600
rosa_wichuraiana	Rw6G023160 Rw7G018810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	790
AccB7I	CCANNNNNTGG	1 cut(s)	380
AccI	GTMKAC	1 cut(s)	1374
AccIII	TCCGGA	1 cut(s)	871
AclI	AACGTT	1 cut(s)	92
AclWI	GGATC	3 cut(s)	70, 514, 1128
AcsI	RAATTY	4 cut(s)	227, 281, 608, 1342
AfaI	GTAC	5 cut(s)	977, 1085, 1108, 1151, 1259
AfiI	CCNNNNNNNGG	4 cut(s)	380, 410, 557, 749
AflIII	ACRYGT	1 cut(s)	1320
AgsI	TTSAA	7 cut(s)	110, 175, 655, 1033, 1072, 1223, 1270
AloI	GAACNNNNNNTCC	2 cut(s)	1292, 1324
Alw21I	GWGCWC	1 cut(s)	1162
Alw26I	GTCTC	1 cut(s)	487
AlwI	GGATC	3 cut(s)	70, 514, 1128
Aor13HI	TCCGGA	1 cut(s)	871
AoxI	GGCC	2 cut(s)	234, 1143
ApeKI	GCWGC	2 cut(s)	887, 1058
ApoI	RAATTY	4 cut(s)	227, 281, 608, 1342
ArsI	GACNNNNNNTTYG	2 cut(s)	273, 305
Asp700I	GAANNNNTTC	1 cut(s)	917
AspS9I	GGNCC	3 cut(s)	123, 235, 1144
AsuHPI	GGTGA	6 cut(s)	19, 23, 379, 425, 641, 728
AvaII	GGWCC	1 cut(s)	123
BanI	GGYRCC	1 cut(s)	790
BanII	GRGCYC	1 cut(s)	1162
BarI	GAAGNNNNNNTAC	2 cut(s)	1241, 1273
Bbv12I	GWGCWC	1 cut(s)	1162
BbvI	GCAGC	2 cut(s)	874, 1045
BccI	CCATC	3 cut(s)	83, 143, 593
BcoDI	GTCTC	1 cut(s)	487
BfaI	CTAG	2 cut(s)	458, 1381
BfmI	CTRYAG	1 cut(s)	696
BisI	GCNGC	2 cut(s)	888, 1059
BlpI	GCTNAGC	1 cut(s)	1197
BlsI	GCNGC	2 cut(s)	889, 1060
Bme18I	GGWCC	1 cut(s)	123
BmgT120I	GGNCC	3 cut(s)	123, 235, 1144
BmiI	GGNNCC	1 cut(s)	792
BmsI	GCATC	3 cut(s)	416, 1045, 1345
BpmI	CTGGAG	1 cut(s)	1274
Bpu10I	CCTNAGC	2 cut(s)	1023, 1161
Bpu1102I	GCTNAGC	1 cut(s)	1197
BpuEI	CTTGAG	1 cut(s)	1145
BsaJI	CCNNGG	2 cut(s)	144, 1110
BsaWI	WCCGGW	1 cut(s)	871
BsaXI	ACNNNNNCTCC	8 cut(s)	19, 49, 64, 94, 552, 582, 1292, 1322
Bsc4I	CCNNNNNNNGG	4 cut(s)	380, 410, 557, 749
Bse1I	ACTGG	1 cut(s)	126
BseAI	TCCGGA	1 cut(s)	871
BseDI	CCNNGG	2 cut(s)	144, 1110
BseGI	GGATG	4 cut(s)	75, 154, 1249, 1360
BseLI	CCNNNNNNNGG	4 cut(s)	380, 410, 557, 749
BseMII	CTCAG	4 cut(s)	498, 735, 1175, 1188
BseNI	ACTGG	1 cut(s)	126
BseRI	GAGGAG	2 cut(s)	680, 1022
BseXI	GCAGC	2 cut(s)	874, 1045
BseYI	CCCAGC	2 cut(s)	237, 771
BshFI	GGCC	2 cut(s)	236, 1145
BshNI	GGYRCC	1 cut(s)	790
BsiHKAI	GWGCWC	1 cut(s)	1162
BsiSI	CCGG	1 cut(s)	872
BslFI	GGGAC	3 cut(s)	404, 754, 872
BslI	CCNNNNNNNGG	4 cut(s)	380, 410, 557, 749
BsmAI	GTCTC	1 cut(s)	487
BsmFI	GGGAC	3 cut(s)	404, 754, 872
BsmI	GAATGC	2 cut(s)	22, 919
BsnI	GGCC	2 cut(s)	236, 1145
Bsp1286I	GDGCHC	1 cut(s)	1162
Bsp13I	TCCGGA	1 cut(s)	871
Bsp1407I	TGTACA	1 cut(s)	1149
Bsp143I	GATC	3 cut(s)	62, 519, 1120
Bsp1720I	GCTNAGC	1 cut(s)	1197
BspANI	GGCC	2 cut(s)	236, 1145
BspCNI	CTCAG	4 cut(s)	497, 736, 1174, 1189
BspEI	TCCGGA	1 cut(s)	871
BspLI	GGNNCC	1 cut(s)	792
BspPI	GGATC	3 cut(s)	70, 514, 1128
BspQI	GCTCTTC	2 cut(s)	338, 1150
BspT107I	GGYRCC	1 cut(s)	790
BsrGI	TGTACA	1 cut(s)	1149
BsrI	ACTGG	1 cut(s)	126
BssECI	CCNNGG	2 cut(s)	144, 1110
BssMI	GATC	3 cut(s)	62, 519, 1120
BssT1I	CCWWGG	2 cut(s)	144, 1110
Bst4CI	ACNGT	5 cut(s)	277, 289, 367, 481, 574
Bst6I	CTCTTC	3 cut(s)	338, 450, 1150
BstAUI	TGTACA	1 cut(s)	1149
BstC8I	GCNNGC	4 cut(s)	405, 1042, 1063, 1179
BstDEI	CTNAG	5 cut(s)	484, 744, 1023, 1161, 1197
BstF5I	GGATG	4 cut(s)	75, 154, 1249, 1360
BstKTI	GATC	3 cut(s)	65, 522, 1123
BstMAI	GTCTC	1 cut(s)	487
BstMBI	GATC	3 cut(s)	62, 519, 1120
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 1377
BstNSI	RCATGY	1 cut(s)	1324
BstSFI	CTRYAG	1 cut(s)	696
BstV1I	GCAGC	2 cut(s)	874, 1045
BstX2I	RGATCY	3 cut(s)	62, 519, 1120
BstXI	CCANNNNNNTGG	1 cut(s)	1117
BstYI	RGATCY	3 cut(s)	62, 519, 1120
BsuRI	GGCC	2 cut(s)	236, 1145
BtsCI	GGATG	4 cut(s)	75, 154, 1249, 1360
BtsI	GCAGTG	1 cut(s)	792
BtsIMutI	CAGTG	4 cut(s)	133, 285, 579, 792
Cac8I	GCNNGC	4 cut(s)	405, 1042, 1063, 1179
Cfr13I	GGNCC	3 cut(s)	123, 235, 1144
CseI	GACGC	2 cut(s)	45, 536
Csp6I	GTAC	5 cut(s)	976, 1084, 1107, 1150, 1258
CspCI	CAANNNNNGTGG	2 cut(s)	133, 168
CviAII	CATG	4 cut(s)	626, 855, 862, 1321
CviQI	GTAC	5 cut(s)	976, 1084, 1107, 1150, 1258
DdeI	CTNAG	5 cut(s)	484, 744, 1023, 1161, 1197
DpnI	GATC	3 cut(s)	64, 521, 1122
DpnII	GATC	3 cut(s)	62, 519, 1120
DraI	TTTAAA	1 cut(s)	615
Eam1104I	CTCTTC	3 cut(s)	338, 450, 1150
EarI	CTCTTC	3 cut(s)	338, 450, 1150
Ecl136II	GAGCTC	1 cut(s)	1160
Eco130I	CCWWGG	2 cut(s)	144, 1110
Eco24I	GRGCYC	1 cut(s)	1162
Eco47I	GGWCC	1 cut(s)	123
Eco53kI	GAGCTC	1 cut(s)	1160
EcoICRI	GAGCTC	1 cut(s)	1160
EcoO109I	RGGNCCY	1 cut(s)	1144
EcoRI	GAATTC	1 cut(s)	281
EcoT14I	CCWWGG	2 cut(s)	144, 1110
EcoT38I	GRGCYC	1 cut(s)	1162
ErhI	CCWWGG	2 cut(s)	144, 1110
FaeI	CATG	4 cut(s)	629, 858, 865, 1324
FaqI	GGGAC	3 cut(s)	404, 754, 872
FatI	CATG	4 cut(s)	625, 854, 861, 1320
FblI	GTMKAC	1 cut(s)	1374
Fnu4HI	GCNGC	2 cut(s)	888, 1059
FokI	GGATG	4 cut(s)	62, 161, 1256, 1367
FriOI	GRGCYC	1 cut(s)	1162
Fsp4HI	GCNGC	2 cut(s)	888, 1059
FspBI	CTAG	2 cut(s)	458, 1381
GluI	GCNGC	2 cut(s)	888, 1059
GsaI	CCCAGC	2 cut(s)	241, 775
GsuI	CTGGAG	1 cut(s)	1274
HaeIII	GGCC	2 cut(s)	236, 1145
HapII	CCGG	1 cut(s)	872
HgaI	GACGC	2 cut(s)	45, 536
Hin1II	CATG	4 cut(s)	629, 858, 865, 1324
HincII	GTYRAC	1 cut(s)	363
HindII	GTYRAC	1 cut(s)	363
HindIII	AAGCTT	1 cut(s)	945
HinfI	GANTC	4 cut(s)	672, 767, 851, 989
HpaII	CCGG	1 cut(s)	872
HphI	GGTGA	6 cut(s)	19, 23, 379, 425, 641, 728
Hpy166II	GTNNAC	5 cut(s)	123, 133, 363, 1107, 1375
Hpy188I	TCNGA	3 cut(s)	271, 487, 766
Hpy188III	TCNNGA	8 cut(s)	38, 60, 458, 655, 872, 1124, 1210, 1220
Hpy8I	GTNNAC	5 cut(s)	123, 133, 363, 1107, 1375
Hpy99I	CGWCG	1 cut(s)	281
HpyCH4III	ACNGT	5 cut(s)	277, 289, 367, 481, 574
HpyCH4IV	ACGT	1 cut(s)	92
HpyCH4V	TGCA	9 cut(s)	89, 97, 314, 407, 440, 595, 941, 1044, 1065
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 1377
HpyF3I	CTNAG	5 cut(s)	484, 744, 1023, 1161, 1197
HpySE526I	ACGT	1 cut(s)	92
Hsp92II	CATG	4 cut(s)	629, 858, 865, 1324
Kpn2I	TCCGGA	1 cut(s)	871
Kzo9I	GATC	3 cut(s)	62, 519, 1120
LguI	GCTCTTC	2 cut(s)	338, 1150
LmnI	GCTCC	2 cut(s)	560, 667
Lsp1109I	GCAGC	2 cut(s)	874, 1045
LweI	GCATC	3 cut(s)	416, 1045, 1345
MaeI	CTAG	2 cut(s)	458, 1381
MaeII	ACGT	1 cut(s)	92
MaeIII	GTNAC	3 cut(s)	299, 568, 700
MalI	GATC	3 cut(s)	64, 521, 1122
MboI	GATC	3 cut(s)	62, 519, 1120
MflI	RGATCY	3 cut(s)	62, 519, 1120
MhlI	GDGCHC	1 cut(s)	1162
MlyI	GAGTC	2 cut(s)	681, 776
MmeI	TCCRAC	1 cut(s)	1098
MroI	TCCGGA	1 cut(s)	871
MroXI	GAANNNNTTC	1 cut(s)	917
MseI	TTAA	6 cut(s)	162, 225, 330, 513, 614, 924
MspA1I	CMGCKG	1 cut(s)	1177
MspI	CCGG	1 cut(s)	872
Mva1269I	GAATGC	2 cut(s)	22, 919
MwoI	GCNNNNNNNGC	2 cut(s)	53, 1377
NdeII	GATC	3 cut(s)	62, 519, 1120
NlaIII	CATG	4 cut(s)	629, 858, 865, 1324
NlaIV	GGNNCC	1 cut(s)	792
NmuCI	GTSAC	1 cut(s)	700
NspI	RCATGY	1 cut(s)	1324
PciI	ACATGT	1 cut(s)	1320
PciSI	GCTCTTC	2 cut(s)	338, 1150
PctI	GAATGC	2 cut(s)	22, 919
PdmI	GAANNNNTTC	1 cut(s)	917
PfeI	GAWTC	2 cut(s)	851, 989
PflFI	GACNNNGTC	1 cut(s)	275
PflMI	CCANNNNNTGG	1 cut(s)	380
PkrI	GCNGC	2 cut(s)	889, 1060
PleI	GAGTC	2 cut(s)	680, 775
PpsI	GAGTC	2 cut(s)	680, 775
PscI	ACATGT	1 cut(s)	1320
Psp124BI	GAGCTC	1 cut(s)	1162
Psp1406I	AACGTT	1 cut(s)	92
PspFI	CCCAGC	2 cut(s)	237, 771
PspN4I	GGNNCC	1 cut(s)	792
PspPI	GGNCC	3 cut(s)	123, 235, 1144
PsuI	RGATCY	3 cut(s)	62, 519, 1120
PsyI	GACNNNGTC	1 cut(s)	275
PvuII	CAGCTG	1 cut(s)	1177
RsaI	GTAC	5 cut(s)	977, 1085, 1108, 1151, 1259
RsaNI	GTAC	5 cut(s)	976, 1084, 1107, 1150, 1258
SacI	GAGCTC	1 cut(s)	1162
SapI	GCTCTTC	2 cut(s)	338, 1150
SaqAI	TTAA	6 cut(s)	162, 225, 330, 513, 614, 924
SatI	GCNGC	2 cut(s)	888, 1059
Sau3AI	GATC	3 cut(s)	62, 519, 1120
Sau96I	GGNCC	3 cut(s)	123, 235, 1144
SchI	GAGTC	2 cut(s)	681, 776
SduI	GDGCHC	1 cut(s)	1162
SfaNI	GCATC	3 cut(s)	416, 1045, 1345
SfcI	CTRYAG	1 cut(s)	696
SinI	GGWCC	1 cut(s)	123
SmlI	CTYRAG	1 cut(s)	1124
SmoI	CTYRAG	1 cut(s)	1124
SspMI	CTAG	2 cut(s)	458, 1381
SstI	GAGCTC	1 cut(s)	1162
StyI	CCWWGG	2 cut(s)	144, 1110
TaaI	ACNGT	5 cut(s)	277, 289, 367, 481, 574
TaiI	ACGT	1 cut(s)	95
TaqI	TCGA	5 cut(s)	102, 243, 279, 822, 981
TatI	WGTACW	4 cut(s)	975, 1083, 1149, 1257
TfiI	GAWTC	2 cut(s)	851, 989
Tru1I	TTAA	6 cut(s)	162, 225, 330, 513, 614, 924
Tru9I	TTAA	6 cut(s)	162, 225, 330, 513, 614, 924
TscAI	CASTG	4 cut(s)	133, 292, 579, 792
TseFI	GTSAC	1 cut(s)	700
TseI	GCWGC	2 cut(s)	887, 1058
Tsp45I	GTSAC	1 cut(s)	700
TspDTI	ATGAA	9 cut(s)	17, 228, 264, 353, 437, 570, 722, 878, 1295
TspRI	CASTG	4 cut(s)	133, 292, 579, 792
Tth111I	GACNNNGTC	1 cut(s)	275
Van91I	CCANNNNNTGG	1 cut(s)	380
VpaK11BI	GGWCC	1 cut(s)	123
XapI	RAATTY	4 cut(s)	227, 281, 608, 1342
XbaI	TCTAGA	1 cut(s)	457
XceI	RCATGY	1 cut(s)	1324
XmiI	GTMKAC	1 cut(s)	1374
XmnI	GAANNNNTTC	1 cut(s)	917
XspI	CTAG	2 cut(s)	458, 1381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.