Rorug06G0155500

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0003751
Physical Location & Seq
Forward (+)
22257627 .. 22260960
3334 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0155500.1

Sequence Viewer

Length: 1281 bp
ATGTCAAAGGAGAATGGGTCGGTGGTTTCAAAGAATTGTGATGTTACTGATGGAAATGGCTGTAGTGAATTTCCCAGTAACACAGATGATAAAGTGGAGTTGACTGCTGAAATAAAGAAGAGGGACGGGTTGATGAAACAAGCTGCAGCTAACATTGAATTCTCAGAGAATGATAGAAGTTTAAAGACACACCCACGTGAAAAGAAGCTTATTGACTTCAGAGAAAAGTTGTACCTTGCACCTCTGACCACAGTCGGAAATCTTCCATTTCGAAGGGTTTGCAAAGGTTTAGGGGCAGATATAACATGTGGTGAAATGGCAATGTGTACAAATCTTTTGCAGGGTCAAGCGTCGGAATGGGCCCTGCTGAGGAGACATTCATCTGAGGATTTGTTTGGCGTTCAGATATGTGGGGCATATCCAGACACCGTAGCACGCACTGTTGAACTTATAGAACAGGAATGTACCGTAGACTTCATTGATATAAATATGGGGTGCCCAATAGATATTGTTGTGAACAAGGGTGCTGGCTCAGCTCTTCTAACAAAACCAATGCGAATGAAAGGCATTGTGCAAGCAGCTTCTGGTACAGTTGACATTCCTAAAACTATCAAGGTCCGCACAGCCTATTTTGAGGGGAAAAATCGCATTGACTCACTTATTGCTGACATGGGTAACTGGGGAGCCAGTGCAGTAACAATACATGGTCGATCACGACAGCAACGCTACAGCAAGCTTGCAGATTGGGAATATGTGTACCAGTGTGCTAAAAAAGCCCCTGATTCTTTGCAAGTTCTTGGAAATGGAGATGTATTTTCGTATGTAGATTGGAACAAGCACAAGGCTGAGTGCCCTGAACTGTCTTCATTCATGATTGCTCGAGGAGCAGCACTAATTAAGCCTGGGGTTTTTACAGAAATAAAGGAGCAGAGGCACTGGGACATCACTTCTGGGGAGCGATTTAATATTTTGAAGGATTATGTACGTTGTGGCCTTGAACATTGGGGCTCTGACACAAAAGGTGTCGAGACAACTAGGCGTTTTCTGTTAGAATGGCTTAGCTACACTTGTAGATATGTACCTGATGATGTCATCCCACAACGACTGAGCTGGCGCCCACCATCTTATTTTGGACGTGATGACCTTGAGACACTAATGGCTTCTGATTCTGCCGCTGACTGGGTTAGGCTCTCTGAGATGTTGCTTGGGAAGGTTCCAGATGGTTTCACATTTGCACCAAAGCATAAATCCAATGATTACGACCGAGCAGAAAACGGCTAA

Protein Analysis

426

Amino Acids

47.73

Weight (kDa)

6.23

Isoelectric Point (pI)

32.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dus PF01207 79 - 334 1.1e-45 Dihydrouridine synthase (Dus)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 495, 1113
AccI GTMKAC 1 cut(s) 471
AciI CCGC 2 cut(s) 619, 1173
AcsI RAATTY 2 cut(s) 68, 158
AcuI CTGAAG 1 cut(s) 202
AcvI CACGTG 1 cut(s) 197
AcyI GRCGYC 1 cut(s) 1114
AfaI GTAC 7 cut(s) 233, 328, 466, 589, 758, 984, 1080
AfiI CCNNNNNNNGG 2 cut(s) 369, 1179
AflIII ACRYGT 1 cut(s) 305
AgsI TTSAA 5 cut(s) 30, 158, 446, 973, 998
AjiI CACGTC 1 cut(s) 1136
AjnI CCWGG 1 cut(s) 901
AleI CACNNNNGTG 1 cut(s) 195
AluBI AGCT 8 cut(s) 143, 149, 208, 536, 581, 736, 1062, 1110
AluI AGCT 8 cut(s) 143, 149, 208, 536, 581, 736, 1062, 1110
Alw26I GTCTC 3 cut(s) 367, 1022, 1142
AlwNI CAGNNNCTG 1 cut(s) 584
Ama87I CYCGRG 1 cut(s) 879
AoxI GGCC 2 cut(s) 360, 991
ApaI GGGCCC 1 cut(s) 364
ApeKI GCWGC 4 cut(s) 143, 146, 578, 887
ApoI RAATTY 2 cut(s) 68, 158
AspLEI GCGC 1 cut(s) 1116
AspS9I GGNCC 3 cut(s) 360, 361, 616
AsuHPI GGTGA 1 cut(s) 323
AsuII TTCGAA 1 cut(s) 271
AvaI CYCGRG 1 cut(s) 879
AvaII GGWCC 1 cut(s) 616
BaeGI GKGCMC 3 cut(s) 364, 500, 854
BanI GGYRCC 2 cut(s) 495, 1113
BanII GRGCYC 2 cut(s) 364, 1010
BbrPI CACGTG 1 cut(s) 197
BbsI GAAGAC 1 cut(s) 855
BbvCI CCTCAGC 1 cut(s) 368
BbvI GCAGC 4 cut(s) 130, 158, 590, 899
BccI CCATC 3 cut(s) 44, 1129, 1214
BcgI CGANNNNNNTGC 2 cut(s) 261, 295
BciT130I CCWGG 1 cut(s) 903
BcoDI GTCTC 3 cut(s) 367, 1022, 1142
BfaI CTAG 1 cut(s) 1035
BfmI CTRYAG 3 cut(s) 61, 144, 727
BfoI RGCGCY 1 cut(s) 1117
BisI GCNGC 5 cut(s) 144, 147, 579, 888, 1173
BlpI GCTNAGC 2 cut(s) 532, 1058
BlsI GCNGC 5 cut(s) 145, 148, 580, 889, 1174
Bme1390I CCNGG 1 cut(s) 903
Bme18I GGWCC 1 cut(s) 616
BmeT110I CYCGRG 1 cut(s) 879
BmgBI CACGTC 1 cut(s) 1136
BmgT120I GGNCC 3 cut(s) 360, 361, 616
BmiI GGNNCC 5 cut(s) 362, 497, 685, 1115, 1215
BmrFI CCNGG 1 cut(s) 903
BmrI ACTGGG 4 cut(s) 69, 688, 946, 1189
BmuI ACTGGG 4 cut(s) 69, 688, 946, 1189
BoxI GACNNNNGTC 1 cut(s) 251
BpiI GAAGAC 1 cut(s) 855
Bpu10I CCTNAGC 1 cut(s) 368
Bpu1102I GCTNAGC 2 cut(s) 532, 1058
Bpu14I TTCGAA 1 cut(s) 271
BpuEI CTTGAG 1 cut(s) 1166
BsaAI YACGTR 1 cut(s) 197
BsaHI GRCGYC 1 cut(s) 1114
BsaJI CCNNGG 1 cut(s) 902
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 2 cut(s) 369, 1179
Bse1I ACTGG 6 cut(s) 75, 683, 687, 760, 941, 1184
Bse3DI GCAATG 1 cut(s) 327
BseBI CCWGG 1 cut(s) 903
BseDI CCNNGG 1 cut(s) 902
BseGI GGATG 1 cut(s) 1092
BseLI CCNNNNNNNGG 2 cut(s) 369, 1179
BseMI GCAATG 1 cut(s) 327
BseMII CTCAG 7 cut(s) 177, 359, 375, 546, 837, 1097, 1185
BseNI ACTGG 6 cut(s) 75, 683, 687, 760, 941, 1184
BseRI GAGGAG 2 cut(s) 385, 897
BseSI GKGCMC 3 cut(s) 364, 500, 854
BseXI GCAGC 4 cut(s) 130, 158, 590, 899
BsgI GTGCAG 1 cut(s) 711
Bsh1285I CGRYCG 1 cut(s) 1264
BshFI GGCC 2 cut(s) 362, 993
BshNI GGYRCC 2 cut(s) 495, 1113
BsiEI CGRYCG 1 cut(s) 1264
BsiHKCI CYCGRG 1 cut(s) 879
BslFI GGGAC 2 cut(s) 137, 953
BslI CCNNNNNNNGG 2 cut(s) 369, 1179
BsmAI GTCTC 3 cut(s) 367, 1022, 1142
BsmFI GGGAC 2 cut(s) 137, 953
BsnI GGCC 2 cut(s) 362, 993
BsoBI CYCGRG 1 cut(s) 879
Bsp119I TTCGAA 1 cut(s) 271
Bsp120I GGGCCC 1 cut(s) 360
Bsp1286I GDGCHC 4 cut(s) 364, 500, 854, 1010
Bsp1407I TGTACA 1 cut(s) 326
Bsp143I GATC 1 cut(s) 710
Bsp1720I GCTNAGC 2 cut(s) 532, 1058
BspACI CCGC 2 cut(s) 619, 1173
BspANI GGCC 2 cut(s) 362, 993
BspCNI CTCAG 7 cut(s) 176, 360, 376, 545, 838, 1098, 1186
BspHI TCATGA 1 cut(s) 870
BspLI GGNNCC 5 cut(s) 362, 497, 685, 1115, 1215
BspMAI CTGCAG 1 cut(s) 148
BspQI GCTCTTC 1 cut(s) 543
BspT104I TTCGAA 1 cut(s) 271
BspT107I GGYRCC 2 cut(s) 495, 1113
BsrDI GCAATG 1 cut(s) 327
BsrGI TGTACA 1 cut(s) 326
BsrI ACTGG 6 cut(s) 75, 683, 687, 760, 941, 1184
BssECI CCNNGG 1 cut(s) 902
BssMI GATC 1 cut(s) 710
BssNI GRCGYC 1 cut(s) 1114
Bst2UI CCWGG 1 cut(s) 903
Bst4CI ACNGT 6 cut(s) 253, 430, 442, 469, 592, 861
Bst6I CTCTTC 2 cut(s) 113, 543
BstACI GRCGYC 1 cut(s) 1114
BstAUI TGTACA 1 cut(s) 326
BstBAI YACGTR 1 cut(s) 197
BstBI TTCGAA 1 cut(s) 271
BstC8I GCNNGC 6 cut(s) 436, 529, 576, 734, 738, 1112
BstDEI CTNAG 8 cut(s) 163, 368, 384, 532, 846, 1058, 1106, 1194
BstF5I GGATG 1 cut(s) 1092
BstH2I RGCGCY 1 cut(s) 1117
BstHHI GCGC 1 cut(s) 1116
BstKTI GATC 1 cut(s) 713
BstMAI GTCTC 3 cut(s) 367, 1022, 1142
BstMBI GATC 1 cut(s) 710
BstMCI CGRYCG 1 cut(s) 1264
BstMWI GCNNNNNNNGC 3 cut(s) 533, 773, 884
BstNI CCWGG 1 cut(s) 903
BstNSI RCATGY 1 cut(s) 309
BstPAI GACNNNNGTC 1 cut(s) 251
BstSCI CCNGG 1 cut(s) 901
BstSFI CTRYAG 3 cut(s) 61, 144, 727
BstSLI GKGCMC 3 cut(s) 364, 500, 854
BstV1I GCAGC 4 cut(s) 130, 158, 590, 899
BstV2I GAAGAC 1 cut(s) 855
BsuRI GGCC 2 cut(s) 362, 993
BtrI CACGTC 1 cut(s) 1136
BtsCI GGATG 1 cut(s) 1092
BtsIMutI CAGTG 4 cut(s) 438, 694, 767, 934
Cac8I GCNNGC 6 cut(s) 436, 529, 576, 734, 738, 1112
CaiI CAGNNNCTG 1 cut(s) 584
CciI TCATGA 1 cut(s) 870
CfoI GCGC 1 cut(s) 1116
Cfr13I GGNCC 3 cut(s) 360, 361, 616
CseI GACGC 1 cut(s) 339
Csp6I GTAC 7 cut(s) 232, 327, 465, 588, 757, 983, 1079
CviAII CATG 4 cut(s) 306, 670, 704, 871
CviQI GTAC 7 cut(s) 232, 327, 465, 588, 757, 983, 1079
DdeI CTNAG 8 cut(s) 163, 368, 384, 532, 846, 1058, 1106, 1194
DinI GGCGCC 1 cut(s) 1115
DpnI GATC 1 cut(s) 712
DpnII GATC 1 cut(s) 710
DraI TTTAAA 1 cut(s) 183
Eam1104I CTCTTC 2 cut(s) 113, 543
EarI CTCTTC 2 cut(s) 113, 543
Eco24I GRGCYC 2 cut(s) 364, 1010
Eco47I GGWCC 1 cut(s) 616
Eco57I CTGAAG 1 cut(s) 202
Eco72I CACGTG 1 cut(s) 197
Eco88I CYCGRG 1 cut(s) 879
EcoO109I RGGNCCY 1 cut(s) 361
EcoRI GAATTC 1 cut(s) 158
EcoRII CCWGG 1 cut(s) 901
EcoT38I GRGCYC 2 cut(s) 364, 1010
EgeI GGCGCC 1 cut(s) 1115
EheI GGCGCC 1 cut(s) 1115
FaeI CATG 4 cut(s) 309, 673, 707, 874
FaqI GGGAC 2 cut(s) 137, 953
FatI CATG 4 cut(s) 305, 669, 703, 870
FblI GTMKAC 1 cut(s) 471
Fnu4HI GCNGC 5 cut(s) 144, 147, 579, 888, 1173
FokI GGATG 1 cut(s) 1079
FriOI GRGCYC 2 cut(s) 364, 1010
Fsp4HI GCNGC 5 cut(s) 144, 147, 579, 888, 1173
FspBI CTAG 1 cut(s) 1035
GlaI GCGC 1 cut(s) 1115
GluI GCNGC 5 cut(s) 144, 147, 579, 888, 1173
HaeII RGCGCY 1 cut(s) 1117
HaeIII GGCC 2 cut(s) 362, 993
HgaI GACGC 1 cut(s) 339
HhaI GCGC 1 cut(s) 1116
Hin1I GRCGYC 1 cut(s) 1114
Hin1II CATG 4 cut(s) 309, 673, 707, 874
Hin6I GCGC 1 cut(s) 1114
HinP1I GCGC 1 cut(s) 1114
HincII GTYRAC 2 cut(s) 102, 595
HindII GTYRAC 2 cut(s) 102, 595
HindIII AAGCTT 2 cut(s) 206, 734
HinfI GANTC 3 cut(s) 653, 782, 1166
HphI GGTGA 1 cut(s) 323
Hpy166II GTNNAC 6 cut(s) 102, 327, 472, 517, 595, 757
Hpy188III TCNNGA 5 cut(s) 422, 714, 871, 1027, 1217
Hpy8I GTNNAC 6 cut(s) 102, 327, 472, 517, 595, 757
Hpy99I CGWCG 1 cut(s) 355
HpyAV CCTTC 3 cut(s) 267, 967, 1204
HpyCH4III ACNGT 6 cut(s) 253, 430, 442, 469, 592, 861
HpyCH4IV ACGT 3 cut(s) 196, 985, 1135
HpyCH4V TGCA 9 cut(s) 146, 239, 282, 340, 574, 692, 740, 790, 1235
HpyF10VI GCNNNNNNNGC 3 cut(s) 533, 773, 884
HpyF3I CTNAG 8 cut(s) 163, 368, 384, 532, 846, 1058, 1106, 1194
HpySE526I ACGT 3 cut(s) 196, 985, 1135
Hsp92I GRCGYC 1 cut(s) 1114
Hsp92II CATG 4 cut(s) 309, 673, 707, 874
HspAI GCGC 1 cut(s) 1114
KasI GGCGCC 1 cut(s) 1113
Kzo9I GATC 1 cut(s) 710
LguI GCTCTTC 1 cut(s) 543
LmnI GCTCC 4 cut(s) 683, 884, 925, 955
Lsp1109I GCAGC 4 cut(s) 130, 158, 590, 899
MaeI CTAG 1 cut(s) 1035
MaeII ACGT 3 cut(s) 196, 985, 1135
MaeIII GTNAC 4 cut(s) 43, 77, 674, 694
MalI GATC 1 cut(s) 712
MboI GATC 1 cut(s) 710
MboII GAAGA 4 cut(s) 130, 254, 530, 855
MhlI GDGCHC 4 cut(s) 364, 500, 854, 1010
MluCI AATT 4 cut(s) 34, 68, 158, 894
Mly113I GGCGCC 1 cut(s) 1114
MlyI GAGTC 1 cut(s) 647
MmeI TCCRAC 2 cut(s) 235, 333
MnlI CCTC 7 cut(s) 114, 252, 363, 379, 628, 875, 924
MseI TTAA 3 cut(s) 182, 897, 963
MslI CAYNNNNRTG 1 cut(s) 195
MspA1I CMGCKG 1 cut(s) 1175
MspR9I CCNGG 1 cut(s) 903
MvaI CCWGG 1 cut(s) 903
MwoI GCNNNNNNNGC 3 cut(s) 533, 773, 884
NarI GGCGCC 1 cut(s) 1114
NdeII GATC 1 cut(s) 710
NlaIII CATG 4 cut(s) 309, 673, 707, 874
NlaIV GGNNCC 5 cut(s) 362, 497, 685, 1115, 1215
NspI RCATGY 1 cut(s) 309
NspV TTCGAA 1 cut(s) 271
OliI CACNNNNGTG 1 cut(s) 195
PaeR7I CTCGAG 1 cut(s) 879
PagI TCATGA 1 cut(s) 870
PciI ACATGT 1 cut(s) 305
PciSI GCTCTTC 1 cut(s) 543
PfeI GAWTC 2 cut(s) 782, 1166
PkrI GCNGC 5 cut(s) 145, 148, 580, 889, 1174
PleI GAGTC 1 cut(s) 647
PluTI GGCGCC 1 cut(s) 1117
PmaCI CACGTG 1 cut(s) 197
PmlI CACGTG 1 cut(s) 197
PpsI GAGTC 1 cut(s) 647
Ppu21I YACGTR 1 cut(s) 197
PscI ACATGT 1 cut(s) 305
PshAI GACNNNNGTC 1 cut(s) 251
Psp6I CCWGG 1 cut(s) 901
PspCI CACGTG 1 cut(s) 197
PspGI CCWGG 1 cut(s) 901
PspN4I GGNNCC 5 cut(s) 362, 497, 685, 1115, 1215
PspOMI GGGCCC 1 cut(s) 360
PspPI GGNCC 3 cut(s) 360, 361, 616
PspXI VCTCGAGB 1 cut(s) 879
PstI CTGCAG 1 cut(s) 148
PstNI CAGNNNCTG 1 cut(s) 584
RsaI GTAC 7 cut(s) 233, 328, 466, 589, 758, 984, 1080
RsaNI GTAC 7 cut(s) 232, 327, 465, 588, 757, 983, 1079
RseI CAYNNNNRTG 1 cut(s) 195
SapI GCTCTTC 1 cut(s) 543
SaqAI TTAA 3 cut(s) 182, 897, 963
SatI GCNGC 5 cut(s) 144, 147, 579, 888, 1173
Sau3AI GATC 1 cut(s) 710
Sau96I GGNCC 3 cut(s) 360, 361, 616
SchI GAGTC 1 cut(s) 647
ScrFI CCNGG 1 cut(s) 903
SduI GDGCHC 4 cut(s) 364, 500, 854, 1010
SfcI CTRYAG 3 cut(s) 61, 144, 727
SfoI GGCGCC 1 cut(s) 1115
Sfr274I CTCGAG 1 cut(s) 879
SfuI TTCGAA 1 cut(s) 271
SinI GGWCC 1 cut(s) 616
SlaI CTCGAG 1 cut(s) 879
SmiMI CAYNNNNRTG 1 cut(s) 195
SmlI CTYRAG 2 cut(s) 879, 1145
SmoI CTYRAG 2 cut(s) 879, 1145
Sse9I AATT 4 cut(s) 34, 68, 158, 894
SsiI CCGC 2 cut(s) 619, 1173
SspDI GGCGCC 1 cut(s) 1113
SspI AATATT 1 cut(s) 967
SspMI CTAG 1 cut(s) 1035
StyD4I CCNGG 1 cut(s) 901
TaaI ACNGT 6 cut(s) 253, 430, 442, 469, 592, 861
TaiI ACGT 3 cut(s) 199, 988, 1138
TaqI TCGA 4 cut(s) 271, 709, 880, 1026
TaqII GACCGA 1 cut(s) 1278
TasI AATT 4 cut(s) 34, 68, 158, 894
TatI WGTACW 1 cut(s) 326
TauI GCSGC 1 cut(s) 1175
TfiI GAWTC 2 cut(s) 782, 1166
Tru1I TTAA 3 cut(s) 182, 897, 963
Tru9I TTAA 3 cut(s) 182, 897, 963
TscAI CASTG 4 cut(s) 445, 694, 767, 941
TseI GCWGC 4 cut(s) 143, 146, 578, 887
TspDTI ATGAA 6 cut(s) 149, 369, 466, 575, 855, 859
TspRI CASTG 4 cut(s) 445, 694, 767, 941
VpaK11BI GGWCC 1 cut(s) 616
XapI RAATTY 2 cut(s) 68, 158
XceI RCATGY 1 cut(s) 309
XhoI CTCGAG 1 cut(s) 879
XmiI GTMKAC 1 cut(s) 471
XspI CTAG 1 cut(s) 1035
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.