Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003751

Physical Location & Seq

Genomic Coordinates Forward (+)

21524317 .. 21529086

Gene Structure 4770 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG230200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGTTGCGGCGGCGGAATACTTGGCTGAGGCGGAGGTGTGCGCGTGGTGGAAGGCTGGTTCGCTGTTTCTGGGTTGTCAGAAGGTCTTGAAAGAGGGAGAAGAATGGGAGAGGGAGAACCCAAAAGATCTTGATGAAGTCATAGTTAAATTTGAGGCCCATCTCGAAGATAAAACACTTGTAGCAAAATCTGACCCCGTGGAATTCACTGTCAAAGAGGGTTACTTCTGTCCTGCATTGGCAAAGGCTGTGAAAACAATGAAGAAGGCCGAAAAAGTATTGCTAACGGTGAAACCACAATATGGATTTGGGGACAAGGGTAAGCCTACCTCTGGTGATGAGGGTGCTGTTCCTCCAAATGCAACTCTTCATATTACTCTAGAGTTGGTATCTTGGAGAACAGTCTCAGAACTGACAGATGACCAGAAAGTTATTAAGAAGATCCTAAAAGAAGGGGAAGGGGATGAGCGTCCAAATGAAGGAGCTTTTGTTACAGTGAAATTGATTGGAAAGTTGCAAGATGGAAAGGAATTTTTAAAGAAAGGTCATGCTGGAGGAGAAGAACCATTTGAGTTCAAGACAGATGAGGAGCAAGTCATTGAGGGGCTTGATAGAGCTGTAGTGACAATGAAGAAGGACAAGGAATCATGGGACATGAATACTCTGAATAAAATGGAGGCTGCTGTGAAGGAAGGTCCAGTCCCATCTGCTGACACAGACAACCCATCTGCTCAAGTCTGGAGGATTCCTGGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0006457 GO:0006464 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010286 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0033554 GO:0034605 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051716 GO:0061077 GO:0070370 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04915 map04915

Pfam Domains

Protein Families

FKBP_C TPR_1 TPR_2 TPR_8

Protein Analysis

252

Amino Acids

27.91

Weight (kDa)

4.97

Isoelectric Point (pI)

20.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	39 - 130	2e-17	FKBP-type peptidyl-prolyl cis-trans isomerase
FKBP_C	PF00254	154 - 215	1.6e-11	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25230 AT3G25230
fragaria_vesca	FvH4_2g18150 FvH4_2g18150 FvH4_2g18150
malus_domestica	MD05G1166200.v1.1 MD10G1156300.v1.1
prunus_persica	Prupe.8G194100_v2.0.a1
pyrus_communis	pycom05g15490 pycom10g13450
rosa_chinensis	RchiOBHm_Chr6g0283541 RchiOBHm_Chr7g0204881
rosa_laevigata	RLG00000003424 RLG00000012818
rosa_multiflora	Rmu_sc0005719.1_g000005 Rmu_sc0007194.1_g000004 Rmu_sc0031409.1_g000001 Rmu_sc0031410.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252700 Rroxscaffold_7G00185450
rosa_rugosa	Rorug06G0155300 Rorug06G0155400 Rorug06G0155500 Rorug06G0155600 Rorug07G0086300
rosa_samantha	Rh6AG267500 Rh6BG174200 Rh6BG270000 Rh6DG263400 Rh7AG217000 Rh7CG230200 Rh7DG224600
rosa_wichuraiana	Rw6G023160 Rw7G018810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	302
AccII	CGCG	1 cut(s)	44
AciI	CCGC	4 cut(s)	8, 11, 14, 32
AclWI	GGATC	1 cut(s)	436
AcsI	RAATTY	3 cut(s)	149, 203, 530
AfiI	CCNNNNNNNGG	3 cut(s)	302, 332, 479
AgsI	TTSAA	2 cut(s)	91, 577
AjnI	CCWGG	1 cut(s)	748
AloI	GAACNNNNNNTCC	2 cut(s)	43, 75
AluBI	AGCT	2 cut(s)	485, 617
AluI	AGCT	2 cut(s)	485, 617
Alw26I	GTCTC	1 cut(s)	409
AlwI	GGATC	1 cut(s)	436
AoxI	GGCC	2 cut(s)	156, 267
ApeKI	GCWGC	1 cut(s)	680
ApoI	RAATTY	3 cut(s)	149, 203, 530
AspLEI	GCGC	1 cut(s)	44
AspS9I	GGNCC	2 cut(s)	157, 695
AsuHPI	GGTGA	2 cut(s)	301, 347
AvaII	GGWCC	1 cut(s)	695
BbvCI	CCTCAGC	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	667
BccI	CCATC	4 cut(s)	168, 515, 712, 733
BciT130I	CCWGG	1 cut(s)	750
BcoDI	GTCTC	1 cut(s)	409
BfaI	CTAG	1 cut(s)	380
BfmI	CTRYAG	1 cut(s)	618
BglII	AGATCT	1 cut(s)	127
BisI	GCNGC	3 cut(s)	9, 12, 681
BlsI	GCNGC	3 cut(s)	10, 13, 682
Bme1390I	CCNGG	1 cut(s)	750
Bme18I	GGWCC	1 cut(s)	695
BmgT120I	GGNCC	2 cut(s)	157, 695
BmrFI	CCNGG	1 cut(s)	750
BpmI	CTGGAG	1 cut(s)	573
Bpu10I	CCTNAGC	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	717
BsaJI	CCNNGG	1 cut(s)	198
BsaXI	ACNNNNNCTCC	2 cut(s)	474, 504
Bsc4I	CCNNNNNNNGG	3 cut(s)	302, 332, 479
Bse1I	ACTGG	1 cut(s)	698
BseBI	CCWGG	1 cut(s)	750
BseDI	CCNNGG	1 cut(s)	198
BseGI	GGATG	1 cut(s)	469
BseLI	CCNNNNNNNGG	3 cut(s)	302, 332, 479
BseMII	CTCAG	2 cut(s)	18, 420
BseNI	ACTGG	1 cut(s)	698
BseRI	GAGGAG	2 cut(s)	570, 602
BseXI	GCAGC	1 cut(s)	667
Bsh1236I	CGCG	1 cut(s)	44
BshFI	GGCC	2 cut(s)	158, 269
BslFI	GGGAC	3 cut(s)	326, 665, 686
BslI	CCNNNNNNNGG	3 cut(s)	302, 332, 479
BsmAI	GTCTC	1 cut(s)	409
BsmFI	GGGAC	3 cut(s)	326, 665, 686
BsnI	GGCC	2 cut(s)	158, 269
Bsp143I	GATC	2 cut(s)	127, 441
BspACI	CCGC	4 cut(s)	8, 11, 14, 32
BspANI	GGCC	2 cut(s)	158, 269
BspCNI	CTCAG	2 cut(s)	19, 419
BspFNI	CGCG	1 cut(s)	44
BspPI	GGATC	1 cut(s)	436
BsrI	ACTGG	1 cut(s)	698
BssECI	CCNNGG	1 cut(s)	198
BssMI	GATC	2 cut(s)	127, 441
Bst2UI	CCWGG	1 cut(s)	750
Bst4CI	ACNGT	4 cut(s)	211, 289, 403, 496
Bst6I	CTCTTC	1 cut(s)	372
BstDEI	CTNAG	2 cut(s)	27, 406
BstDSI	CCRYGG	1 cut(s)	198
BstF5I	GGATG	1 cut(s)	469
BstFNI	CGCG	1 cut(s)	44
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	2 cut(s)	130, 444
BstMAI	GTCTC	1 cut(s)	409
BstMBI	GATC	2 cut(s)	127, 441
BstNI	CCWGG	1 cut(s)	750
BstSCI	CCNGG	1 cut(s)	748
BstSFI	CTRYAG	1 cut(s)	618
BstUI	CGCG	1 cut(s)	44
BstV1I	GCAGC	1 cut(s)	667
BstX2I	RGATCY	2 cut(s)	127, 441
BstYI	RGATCY	2 cut(s)	127, 441
BsuRI	GGCC	2 cut(s)	158, 269
BtgI	CCRYGG	1 cut(s)	198
BtsCI	GGATG	1 cut(s)	469
BtsIMutI	CAGTG	2 cut(s)	207, 501
CfoI	GCGC	1 cut(s)	44
Cfr13I	GGNCC	2 cut(s)	157, 695
CseI	GACGC	1 cut(s)	458
CviAII	CATG	3 cut(s)	548, 648, 655
DdeI	CTNAG	2 cut(s)	27, 406
DpnI	GATC	2 cut(s)	129, 443
DpnII	GATC	2 cut(s)	127, 441
DraI	TTTAAA	1 cut(s)	537
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
EciI	GGCGGA	2 cut(s)	29, 47
Eco47I	GGWCC	1 cut(s)	695
EcoRI	GAATTC	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	748
FaeI	CATG	3 cut(s)	551, 651, 658
FaiI	YATR	6 cut(s)	143, 303, 372, 549, 649, 656
FaqI	GGGAC	3 cut(s)	326, 665, 686
FatI	CATG	3 cut(s)	547, 647, 654
Fnu4HI	GCNGC	3 cut(s)	9, 12, 681
FokI	GGATG	1 cut(s)	476
Fsp4HI	GCNGC	3 cut(s)	9, 12, 681
FspBI	CTAG	1 cut(s)	380
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	3 cut(s)	9, 12, 681
GsuI	CTGGAG	1 cut(s)	573
HaeIII	GGCC	2 cut(s)	158, 269
HgaI	GACGC	1 cut(s)	458
HhaI	GCGC	1 cut(s)	44
Hin1II	CATG	3 cut(s)	551, 651, 658
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HinfI	GANTC	2 cut(s)	644, 745
HphI	GGTGA	2 cut(s)	301, 347
Hpy188I	TCNGA	4 cut(s)	81, 193, 409, 666
Hpy188III	TCNNGA	6 cut(s)	88, 131, 164, 380, 577, 739
HpyAV	CCTTC	9 cut(s)	46, 76, 259, 446, 452, 473, 628, 682, 686
HpyCH4III	ACNGT	4 cut(s)	211, 289, 403, 496
HpyCH4V	TGCA	3 cut(s)	236, 362, 517
HpyF3I	CTNAG	2 cut(s)	27, 406
Hsp92II	CATG	3 cut(s)	551, 651, 658
HspAI	GCGC	1 cut(s)	42
Kzo9I	GATC	2 cut(s)	127, 441
LmnI	GCTCC	2 cut(s)	482, 589
LpnPI	CCDG	9 cut(s)	42, 56, 246, 318, 437, 537, 711, 724, 735
Lsp1109I	GCAGC	1 cut(s)	667
MaeI	CTAG	1 cut(s)	380
MaeIII	GTNAC	3 cut(s)	221, 490, 622
MalI	GATC	2 cut(s)	129, 443
MboI	GATC	2 cut(s)	127, 441
MboII	GAAGA	7 cut(s)	113, 179, 274, 359, 451, 572, 643
MflI	RGATCY	2 cut(s)	127, 441
MluCI	AATT	4 cut(s)	149, 203, 500, 530
MseI	TTAA	3 cut(s)	147, 435, 536
MspR9I	CCNGG	1 cut(s)	750
MvaI	CCWGG	1 cut(s)	750
MvnI	CGCG	1 cut(s)	44
NdeII	GATC	2 cut(s)	127, 441
NlaIII	CATG	3 cut(s)	551, 651, 658
NmuCI	GTSAC	1 cut(s)	622
PfeI	GAWTC	2 cut(s)	644, 745
PflMI	CCANNNNNTGG	1 cut(s)	302
PfoI	TCCNGGA	1 cut(s)	748
PkrI	GCNGC	3 cut(s)	10, 13, 682
Psp6I	CCWGG	1 cut(s)	748
PspGI	CCWGG	1 cut(s)	748
PspPI	GGNCC	2 cut(s)	157, 695
PsuI	RGATCY	2 cut(s)	127, 441
SaqAI	TTAA	3 cut(s)	147, 435, 536
SatI	GCNGC	3 cut(s)	9, 12, 681
Sau3AI	GATC	2 cut(s)	127, 441
Sau96I	GGNCC	2 cut(s)	157, 695
ScrFI	CCNGG	1 cut(s)	750
SetI	ASST	7 cut(s)	39, 87, 332, 487, 547, 619, 697
SfcI	CTRYAG	1 cut(s)	618
SinI	GGWCC	1 cut(s)	695
SmlI	CTYRAG	1 cut(s)	732
SmoI	CTYRAG	1 cut(s)	732
Sse9I	AATT	4 cut(s)	149, 203, 500, 530
SsiI	CCGC	4 cut(s)	8, 11, 14, 32
SspMI	CTAG	1 cut(s)	380
StyD4I	CCNGG	1 cut(s)	748
TaaI	ACNGT	4 cut(s)	211, 289, 403, 496
TaqI	TCGA	1 cut(s)	165
TasI	AATT	4 cut(s)	149, 203, 500, 530
TauI	GCSGC	2 cut(s)	11, 14
TfiI	GAWTC	2 cut(s)	644, 745
Tru1I	TTAA	3 cut(s)	147, 435, 536
Tru9I	TTAA	3 cut(s)	147, 435, 536
TscAI	CASTG	2 cut(s)	214, 501
TseFI	GTSAC	1 cut(s)	622
TseI	GCWGC	1 cut(s)	680
Tsp45I	GTSAC	1 cut(s)	622
TspDTI	ATGAA	6 cut(s)	150, 275, 359, 492, 644, 671
TspRI	CASTG	2 cut(s)	214, 501
Van91I	CCANNNNNTGG	1 cut(s)	302
VpaK11BI	GGWCC	1 cut(s)	695
XapI	RAATTY	3 cut(s)	149, 203, 530
XbaI	TCTAGA	1 cut(s)	379
XspI	CTAG	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.