Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003751

Physical Location & Seq

Genomic Coordinates Reverse (-)

48270149 .. 48273880

Gene Structure 3732 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003424

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGAAGAATGGTGAGGATGCCCTTTTCACCAATTCTCCTGAGATGGCTTATGATGCGTCGGGATCTTCCCCAACCATTTCTCCAAATGCCCCCTTGCAGTTCGGTGTTGAATTGCTATCGTGGACTAGTGTGAATGACATAGCCAAGGATGGTGGAATTATTAAGAAGAGGGAGAACCCAAAAGATCTTGATGAAGTCATAGGTTACTTCTGTCGTGCATTGGCAAAGGCTGTGAAAATAATGAAGAAGGCCGAAAAAGTATTGCTAACAGTGAAACCACAATGTATGTTGCCTAGAACCTCCAATGGATTTGGGGACAAGGGTAAGCCTGCCTCGGGTGATGAGGGTGCTGTTCCTCCAAATGCAACTCTTCATATTACTCTAGAGTTGGTATCATGGAGAACAGTCTCAGAACTGACAGATGACCAGAAAGTTATTAAGAAGATCCTAAAAGAAGGGGAAGGGGATGAGCGTCCAAATGAAGGAGCTTTTGTTACAGTGAAATTGATTGGAAAGTTGCAAGATGGAAAGGAATTTTTAAATAAAGTGAAGGAAGGTCCAGTCCCATCTGCTGGTACAGACAACCCATCTGCTCAAGTCTGGAGGACTCCTGGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0006457 GO:0006464 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010286 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0033554 GO:0034605 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051716 GO:0061077 GO:0070370 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04915 map04915

Pfam Domains

Protein Families

FKBP_C TPR_1 TPR_2 TPR_8

Protein Analysis

207

Amino Acids

22.24

Weight (kDa)

6.0

Isoelectric Point (pI)

28.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	1 - 39	8e-06	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25230 AT3G25230
fragaria_vesca	FvH4_2g18150 FvH4_2g18150 FvH4_2g18150
malus_domestica	MD05G1166200.v1.1 MD10G1156300.v1.1
prunus_persica	Prupe.8G194100_v2.0.a1
pyrus_communis	pycom05g15490 pycom10g13450
rosa_chinensis	RchiOBHm_Chr6g0283541 RchiOBHm_Chr7g0204881
rosa_laevigata	RLG00000003424 RLG00000012818
rosa_multiflora	Rmu_sc0005719.1_g000005 Rmu_sc0007194.1_g000004 Rmu_sc0031409.1_g000001 Rmu_sc0031410.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252700 Rroxscaffold_7G00185450
rosa_rugosa	Rorug06G0155300 Rorug06G0155400 Rorug06G0155500 Rorug06G0155600 Rorug07G0086300
rosa_samantha	Rh6AG267500 Rh6BG174200 Rh6BG270000 Rh6DG263400 Rh7AG217000 Rh7CG230200 Rh7DG224600
rosa_wichuraiana	Rw6G023160 Rw7G018810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	572
AclWI	GGATC	2 cut(s)	70, 439
AcsI	RAATTY	1 cut(s)	533
AfaI	GTAC	1 cut(s)	577
AfiI	CCNNNNNNNGG	3 cut(s)	335, 482, 572
AgsI	TTSAA	1 cut(s)	110
AhlI	ACTAGT	1 cut(s)	125
AjnI	CCWGG	1 cut(s)	610
AluBI	AGCT	1 cut(s)	488
AluI	AGCT	1 cut(s)	488
Alw26I	GTCTC	1 cut(s)	412
AlwI	GGATC	2 cut(s)	70, 439
Ama87I	CYCGRG	1 cut(s)	334
AoxI	GGCC	1 cut(s)	249
ApoI	RAATTY	1 cut(s)	533
AspS9I	GGNCC	1 cut(s)	557
AsuHPI	GGTGA	3 cut(s)	19, 23, 350
AvaI	CYCGRG	1 cut(s)	334
AvaII	GGWCC	1 cut(s)	557
BccI	CCATC	5 cut(s)	37, 143, 518, 574, 595
BciT130I	CCWGG	1 cut(s)	612
BcoDI	GTCTC	1 cut(s)	412
BcuI	ACTAGT	1 cut(s)	125
BfaI	CTAG	3 cut(s)	126, 294, 383
BglII	AGATCT	1 cut(s)	184
Bme1390I	CCNGG	1 cut(s)	612
Bme18I	GGWCC	1 cut(s)	557
BmeT110I	CYCGRG	1 cut(s)	334
BmgT120I	GGNCC	1 cut(s)	557
BmrFI	CCNGG	1 cut(s)	612
BmsI	GCATC	2 cut(s)	7, 43
BpuEI	CTTGAG	1 cut(s)	579
BsaJI	CCNNGG	2 cut(s)	144, 333
BsaXI	ACNNNNNCTCC	6 cut(s)	19, 49, 64, 94, 477, 507
Bsc4I	CCNNNNNNNGG	3 cut(s)	335, 482, 572
Bse1I	ACTGG	1 cut(s)	560
BseBI	CCWGG	1 cut(s)	612
BseDI	CCNNGG	2 cut(s)	144, 333
BseGI	GGATG	3 cut(s)	22, 154, 472
BseLI	CCNNNNNNNGG	3 cut(s)	335, 482, 572
BseMII	CTCAG	2 cut(s)	30, 423
BseNI	ACTGG	1 cut(s)	560
BshFI	GGCC	1 cut(s)	251
BsiHKCI	CYCGRG	1 cut(s)	334
BslFI	GGGAC	2 cut(s)	329, 548
BslI	CCNNNNNNNGG	3 cut(s)	335, 482, 572
BsmAI	GTCTC	1 cut(s)	412
BsmFI	GGGAC	2 cut(s)	329, 548
BsnI	GGCC	1 cut(s)	251
BsoBI	CYCGRG	1 cut(s)	334
Bsp143I	GATC	3 cut(s)	62, 184, 444
BspANI	GGCC	1 cut(s)	251
BspCNI	CTCAG	2 cut(s)	31, 422
BspPI	GGATC	2 cut(s)	70, 439
BsrI	ACTGG	1 cut(s)	560
BssECI	CCNNGG	2 cut(s)	144, 333
BssMI	GATC	3 cut(s)	62, 184, 444
BssT1I	CCWWGG	1 cut(s)	144
Bst2UI	CCWGG	1 cut(s)	612
Bst4CI	ACNGT	3 cut(s)	271, 406, 499
Bst6I	CTCTTC	2 cut(s)	161, 375
BstC8I	GCNNGC	1 cut(s)	330
BstDEI	CTNAG	2 cut(s)	39, 409
BstF5I	GGATG	3 cut(s)	22, 154, 472
BstKTI	GATC	3 cut(s)	65, 187, 447
BstMAI	GTCTC	1 cut(s)	412
BstMBI	GATC	3 cut(s)	62, 184, 444
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNI	CCWGG	1 cut(s)	612
BstSCI	CCNGG	1 cut(s)	610
BstX2I	RGATCY	3 cut(s)	62, 184, 444
BstYI	RGATCY	3 cut(s)	62, 184, 444
BsuRI	GGCC	1 cut(s)	251
BtsCI	GGATG	3 cut(s)	22, 154, 472
BtsIMutI	CAGTG	2 cut(s)	276, 504
Cac8I	GCNNGC	1 cut(s)	330
Cfr13I	GGNCC	1 cut(s)	557
CseI	GACGC	2 cut(s)	45, 461
Csp6I	GTAC	1 cut(s)	576
CspCI	CAANNNNNGTGG	2 cut(s)	133, 168
CviAII	CATG	1 cut(s)	396
CviJI	RGCY	6 cut(s)	47, 143, 230, 251, 328, 488
CviKI_1	RGCY	6 cut(s)	47, 143, 230, 251, 328, 488
CviQI	GTAC	1 cut(s)	576
DdeI	CTNAG	2 cut(s)	39, 409
DpnI	GATC	3 cut(s)	64, 186, 446
DpnII	GATC	3 cut(s)	62, 184, 444
DraI	TTTAAA	1 cut(s)	540
Eam1104I	CTCTTC	2 cut(s)	161, 375
EarI	CTCTTC	2 cut(s)	161, 375
Eco130I	CCWWGG	1 cut(s)	144
Eco47I	GGWCC	1 cut(s)	557
Eco88I	CYCGRG	1 cut(s)	334
EcoRII	CCWGG	1 cut(s)	610
EcoT14I	CCWWGG	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	1 cut(s)	399
FaiI	YATR	6 cut(s)	51, 140, 200, 287, 375, 397
FaqI	GGGAC	2 cut(s)	329, 548
FatI	CATG	1 cut(s)	395
FokI	GGATG	3 cut(s)	29, 161, 479
FspBI	CTAG	3 cut(s)	126, 294, 383
HaeIII	GGCC	1 cut(s)	251
HgaI	GACGC	2 cut(s)	45, 461
Hin1II	CATG	1 cut(s)	399
HinfI	GANTC	1 cut(s)	607
HphI	GGTGA	3 cut(s)	19, 23, 350
Hpy166II	GTNNAC	1 cut(s)	123
Hpy188I	TCNGA	1 cut(s)	412
Hpy188III	TCNNGA	5 cut(s)	38, 60, 188, 383, 601
Hpy8I	GTNNAC	1 cut(s)	123
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	6 cut(s)	241, 449, 455, 476, 544, 548
HpyCH4III	ACNGT	3 cut(s)	271, 406, 499
HpyCH4V	TGCA	4 cut(s)	97, 218, 365, 520
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	2 cut(s)	39, 409
Hsp92II	CATG	1 cut(s)	399
Kzo9I	GATC	3 cut(s)	62, 184, 444
LmnI	GCTCC	1 cut(s)	485
LpnPI	CCDG	7 cut(s)	51, 342, 440, 558, 573, 586, 597
LweI	GCATC	2 cut(s)	7, 43
MaeI	CTAG	3 cut(s)	126, 294, 383
MaeIII	GTNAC	2 cut(s)	203, 493
MalI	GATC	3 cut(s)	64, 186, 446
MboI	GATC	3 cut(s)	62, 184, 444
MboII	GAAGA	6 cut(s)	16, 57, 178, 256, 362, 454
MflI	RGATCY	3 cut(s)	62, 184, 444
MluCI	AATT	5 cut(s)	31, 110, 156, 503, 533
MlyI	GAGTC	1 cut(s)	601
MnlI	CCTC	7 cut(s)	7, 162, 310, 337, 343, 366, 597
MseI	TTAA	3 cut(s)	162, 438, 539
MspR9I	CCNGG	1 cut(s)	612
MvaI	CCWGG	1 cut(s)	612
MwoI	GCNNNNNNNGC	1 cut(s)	53
NdeII	GATC	3 cut(s)	62, 184, 444
NlaIII	CATG	1 cut(s)	399
PflMI	CCANNNNNTGG	1 cut(s)	572
PfoI	TCCNGGA	1 cut(s)	610
PleI	GAGTC	1 cut(s)	601
PpsI	GAGTC	1 cut(s)	601
Psp6I	CCWGG	1 cut(s)	610
PspGI	CCWGG	1 cut(s)	610
PspPI	GGNCC	1 cut(s)	557
PsuI	RGATCY	3 cut(s)	62, 184, 444
RsaI	GTAC	1 cut(s)	577
RsaNI	GTAC	1 cut(s)	576
SaqAI	TTAA	3 cut(s)	162, 438, 539
Sau3AI	GATC	3 cut(s)	62, 184, 444
Sau96I	GGNCC	1 cut(s)	557
SchI	GAGTC	1 cut(s)	601
ScrFI	CCNGG	1 cut(s)	612
SetI	ASST	4 cut(s)	205, 302, 490, 559
SfaNI	GCATC	2 cut(s)	7, 43
SinI	GGWCC	1 cut(s)	557
SmlI	CTYRAG	1 cut(s)	594
SmoI	CTYRAG	1 cut(s)	594
SpeI	ACTAGT	1 cut(s)	125
Sse9I	AATT	5 cut(s)	31, 110, 156, 503, 533
SspMI	CTAG	3 cut(s)	126, 294, 383
StyD4I	CCNGG	1 cut(s)	610
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	3 cut(s)	271, 406, 499
TasI	AATT	5 cut(s)	31, 110, 156, 503, 533
Tru1I	TTAA	3 cut(s)	162, 438, 539
Tru9I	TTAA	3 cut(s)	162, 438, 539
TscAI	CASTG	2 cut(s)	276, 504
TspDTI	ATGAA	5 cut(s)	17, 207, 257, 362, 495
TspRI	CASTG	2 cut(s)	276, 504
Van91I	CCANNNNNTGG	1 cut(s)	572
VpaK11BI	GGWCC	1 cut(s)	557
XapI	RAATTY	1 cut(s)	533
XbaI	TCTAGA	1 cut(s)	382
XspI	CTAG	3 cut(s)	126, 294, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.