Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003751

Physical Location & Seq

Genomic Coordinates Forward (+)

22255098 .. 22256054

Gene Structure 957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0155400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGGCGACGACACTCCTGCCGCAACTGGGCCGGGCCCAGAGGTCTCCAACGGCGTCGCGGCGGCGGCGGCTGAGAGGACGCCGGAGGAGCTCGTAGCCAAGTCCATCGCTCCGGTGAAGAAACAGTACCTTCGCCCTCCTCCCGTCAGACCTTGCTCTAAGGATCAAAACGACGCCGTCTGTGAGGGCAACGCGAACCCTGCACAGTCGAACGTAGTGAAGGAGAAGAAGTCCAAGCGGCAGCTTAAGCGTGAACGCCGCGAGGTACAGAAATCGCCCCTCGGTATCTGTCCAGAGGTAGCAAAGAAGGGAGATGTTAGTCGGTGTCCATATAATGATAAGTGCCGCTACAGCCACGACATAGAAGCCTATAAGGCTCAGAAACCTGAGGATATAGAGGGAGAATGTCCTTTTATGAGCCATGTCCTTATGGTTTGTCATGTAGGTTCTTGGGTACGCATAAAAATGGTGTTGCAGATGGAGATGTCAATGCTCGTAGAAGAAGCTCTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0006457 GO:0006464 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010286 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0033554 GO:0034605 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051716 GO:0061077 GO:0070370 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04915 map04915

Pfam Domains

Protein Families

FKBP_C TPR_1 TPR_2 TPR_8

Protein Analysis

171

Amino Acids

18.92

Weight (kDa)

8.44

Isoelectric Point (pI)

61.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH_DUS3L	PF25585	94 - 127	2.3e-11	DUS3L CCCH zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25230 AT3G25230
fragaria_vesca	FvH4_2g18150 FvH4_2g18150 FvH4_2g18150
malus_domestica	MD05G1166200.v1.1 MD10G1156300.v1.1
prunus_persica	Prupe.8G194100_v2.0.a1
pyrus_communis	pycom05g15490 pycom10g13450
rosa_chinensis	RchiOBHm_Chr6g0283541 RchiOBHm_Chr7g0204881
rosa_laevigata	RLG00000003424 RLG00000012818
rosa_multiflora	Rmu_sc0005719.1_g000005 Rmu_sc0007194.1_g000004 Rmu_sc0031409.1_g000001 Rmu_sc0031410.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252700 Rroxscaffold_7G00185450
rosa_rugosa	Rorug06G0155300 Rorug06G0155400 Rorug06G0155500 Rorug06G0155600 Rorug07G0086300
rosa_samantha	Rh6AG267500 Rh6BG174200 Rh6BG270000 Rh6DG263400 Rh7AG217000 Rh7CG230200 Rh7DG224600
rosa_wichuraiana	Rw6G023160 Rw7G018810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	59, 194, 261
AciI	CCGC	8 cut(s)	21, 59, 62, 65, 68, 238, 259, 346
AclWI	GGATC	1 cut(s)	171
AcyI	GRCGYC	3 cut(s)	54, 80, 174
AfaI	GTAC	3 cut(s)	128, 267, 456
AfiI	CCNNNNNNNGG	1 cut(s)	27
AflII	CTTAAG	1 cut(s)	245
AluBI	AGCT	3 cut(s)	91, 244, 506
AluI	AGCT	3 cut(s)	91, 244, 506
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	1 cut(s)	49
AlwI	GGATC	1 cut(s)	171
AoxI	GGCC	2 cut(s)	29, 34
ApaI	GGGCCC	1 cut(s)	38
ApeKI	GCWGC	1 cut(s)	241
AspS9I	GGNCC	3 cut(s)	29, 34, 35
AsuC2I	CCSGG	1 cut(s)	33
AsuHPI	GGTGA	1 cut(s)	127
AxyI	CCTNAGG	1 cut(s)	387
BaeGI	GKGCMC	1 cut(s)	38
BanII	GRGCYC	2 cut(s)	38, 93
BarI	GAAGNNNNNNTAC	2 cut(s)	110, 142
Bbv12I	GWGCWC	1 cut(s)	93
BbvI	GCAGC	1 cut(s)	253
BccI	CCATC	2 cut(s)	113, 472
BceAI	ACGGC	2 cut(s)	67, 161
BcgI	CGANNNNNNTGC	1 cut(s)	33
BcnI	CCSGG	1 cut(s)	33
BcoDI	GTCTC	1 cut(s)	49
BfmI	CTRYAG	1 cut(s)	349
BfrI	CTTAAG	1 cut(s)	245
BglI	GCCNNNNNGGC	1 cut(s)	374
BisI	GCNGC	9 cut(s)	21, 60, 63, 66, 69, 239, 242, 259, 346
BlsI	GCNGC	9 cut(s)	22, 61, 64, 67, 70, 240, 243, 260, 347
Bme1390I	CCNGG	1 cut(s)	33
BmgT120I	GGNCC	3 cut(s)	29, 34, 35
BmiI	GGNNCC	1 cut(s)	36
BmrFI	CCNGG	1 cut(s)	33
BmrI	ACTGGG	1 cut(s)	36
BmuI	ACTGGG	1 cut(s)	36
BpuMI	CCSGG	1 cut(s)	33
BsaHI	GRCGYC	3 cut(s)	54, 80, 174
BsaI	GGTCTC	1 cut(s)	49
BsaJI	CCNNGG	1 cut(s)	280
BsaWI	WCCGGW	1 cut(s)	112
BsaXI	ACNNNNNCTCC	2 cut(s)	215, 245
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
Bse1I	ACTGG	1 cut(s)	31
Bse21I	CCTNAGG	1 cut(s)	387
BseDI	CCNNGG	1 cut(s)	280
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMII	CTCAG	4 cut(s)	63, 378, 392, 500
BseNI	ACTGG	1 cut(s)	31
BseRI	GAGGAG	2 cut(s)	101, 129
BseSI	GKGCMC	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	253
BsgI	GTGCAG	1 cut(s)	186
Bsh1236I	CGCG	3 cut(s)	59, 194, 261
BshFI	GGCC	2 cut(s)	31, 36
BsiHKAI	GWGCWC	1 cut(s)	93
BsiSI	CCGG	3 cut(s)	32, 83, 113
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmAI	GTCTC	1 cut(s)	49
BsnI	GGCC	2 cut(s)	31, 36
Bso31I	GGTCTC	1 cut(s)	49
Bsp120I	GGGCCC	1 cut(s)	34
Bsp1286I	GDGCHC	2 cut(s)	38, 93
Bsp143I	GATC	1 cut(s)	163
BspACI	CCGC	8 cut(s)	21, 59, 62, 65, 68, 238, 259, 346
BspANI	GGCC	2 cut(s)	31, 36
BspCNI	CTCAG	4 cut(s)	64, 379, 391, 501
BspFNI	CGCG	3 cut(s)	59, 194, 261
BspLI	GGNNCC	1 cut(s)	36
BspPI	GGATC	1 cut(s)	171
BspTI	CTTAAG	1 cut(s)	245
BspTNI	GGTCTC	1 cut(s)	49
BsrI	ACTGG	1 cut(s)	31
BssECI	CCNNGG	1 cut(s)	280
BssMI	GATC	1 cut(s)	163
BssNI	GRCGYC	3 cut(s)	54, 80, 174
Bst4CI	ACNGT	2 cut(s)	126, 207
BstACI	GRCGYC	3 cut(s)	54, 80, 174
BstAFI	CTTAAG	1 cut(s)	245
BstDEI	CTNAG	5 cut(s)	72, 159, 378, 387, 509
BstFNI	CGCG	3 cut(s)	59, 194, 261
BstKTI	GATC	1 cut(s)	166
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	1 cut(s)	163
BstMWI	GCNNNNNNNGC	7 cut(s)	65, 68, 88, 200, 247, 351, 374
BstSCI	CCNGG	1 cut(s)	31
BstSFI	CTRYAG	1 cut(s)	349
BstSLI	GKGCMC	1 cut(s)	38
BstUI	CGCG	3 cut(s)	59, 194, 261
BstV1I	GCAGC	1 cut(s)	253
Bsu36I	CCTNAGG	1 cut(s)	387
BsuRI	GGCC	2 cut(s)	31, 36
BtgZI	GCGATG	1 cut(s)	91
Cfr13I	GGNCC	3 cut(s)	29, 34, 35
CseI	GACGC	3 cut(s)	43, 88, 182
Csp6I	GTAC	3 cut(s)	127, 266, 455
CviAII	CATG	2 cut(s)	422, 440
CviQI	GTAC	3 cut(s)	127, 266, 455
DdeI	CTNAG	5 cut(s)	72, 159, 378, 387, 509
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
Ecl136II	GAGCTC	1 cut(s)	91
Eco24I	GRGCYC	2 cut(s)	38, 93
Eco31I	GGTCTC	1 cut(s)	49
Eco53kI	GAGCTC	1 cut(s)	91
Eco81I	CCTNAGG	1 cut(s)	387
EcoICRI	GAGCTC	1 cut(s)	91
EcoT38I	GRGCYC	2 cut(s)	38, 93
FaeI	CATG	2 cut(s)	425, 443
FatI	CATG	2 cut(s)	421, 439
Fnu4HI	GCNGC	9 cut(s)	21, 60, 63, 66, 69, 239, 242, 259, 346
FriOI	GRGCYC	2 cut(s)	38, 93
Fsp4HI	GCNGC	9 cut(s)	21, 60, 63, 66, 69, 239, 242, 259, 346
GluI	GCNGC	9 cut(s)	21, 60, 63, 66, 69, 239, 242, 259, 346
HaeIII	GGCC	2 cut(s)	31, 36
HapII	CCGG	3 cut(s)	32, 83, 113
HgaI	GACGC	3 cut(s)	43, 88, 182
Hin1I	GRCGYC	3 cut(s)	54, 80, 174
Hin1II	CATG	2 cut(s)	425, 443
HpaII	CCGG	3 cut(s)	32, 83, 113
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	1 cut(s)	254
Hpy188I	TCNGA	3 cut(s)	149, 381, 510
Hpy188III	TCNNGA	1 cut(s)	293
Hpy8I	GTNNAC	1 cut(s)	254
Hpy99I	CGWCG	3 cut(s)	11, 59, 176
HpyAV	CCTTC	3 cut(s)	140, 214, 301
HpyCH4III	ACNGT	2 cut(s)	126, 207
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	2 cut(s)	203, 475
HpyF10VI	GCNNNNNNNGC	7 cut(s)	65, 68, 88, 200, 247, 351, 374
HpyF3I	CTNAG	5 cut(s)	72, 159, 378, 387, 509
HpySE526I	ACGT	1 cut(s)	213
Hsp92I	GRCGYC	3 cut(s)	54, 80, 174
Hsp92II	CATG	2 cut(s)	425, 443
Kzo9I	GATC	1 cut(s)	163
LmnI	GCTCC	2 cut(s)	88, 115
LpnPI	CCDG	9 cut(s)	12, 30, 45, 51, 96, 126, 213, 306, 399
Lsp1109I	GCAGC	1 cut(s)	253
MaeII	ACGT	1 cut(s)	213
MalI	GATC	1 cut(s)	165
MboI	GATC	1 cut(s)	163
MboII	GAAGA	3 cut(s)	130, 238, 512
MhlI	GDGCHC	2 cut(s)	38, 93
MmeI	TCCRAC	1 cut(s)	72
MseI	TTAA	1 cut(s)	246
MslI	CAYNNNNRTG	1 cut(s)	464
MspCI	CTTAAG	1 cut(s)	245
MspI	CCGG	3 cut(s)	32, 83, 113
MspR9I	CCNGG	1 cut(s)	33
MvnI	CGCG	3 cut(s)	59, 194, 261
MwoI	GCNNNNNNNGC	7 cut(s)	65, 68, 88, 200, 247, 351, 374
NciI	CCSGG	1 cut(s)	33
NdeII	GATC	1 cut(s)	163
NlaIII	CATG	2 cut(s)	425, 443
NlaIV	GGNNCC	1 cut(s)	36
PflFI	GACNNNGTC	1 cut(s)	176
PkrI	GCNGC	9 cut(s)	22, 61, 64, 67, 70, 240, 243, 260, 347
Psp124BI	GAGCTC	1 cut(s)	93
PspN4I	GGNNCC	1 cut(s)	36
PspOMI	GGGCCC	1 cut(s)	34
PspPI	GGNCC	3 cut(s)	29, 34, 35
PsyI	GACNNNGTC	1 cut(s)	176
RsaI	GTAC	3 cut(s)	128, 267, 456
RsaNI	GTAC	3 cut(s)	127, 266, 455
RseI	CAYNNNNRTG	1 cut(s)	464
SacI	GAGCTC	1 cut(s)	93
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	9 cut(s)	21, 60, 63, 66, 69, 239, 242, 259, 346
Sau3AI	GATC	1 cut(s)	163
Sau96I	GGNCC	3 cut(s)	29, 34, 35
ScrFI	CCNGG	1 cut(s)	33
SduI	GDGCHC	2 cut(s)	38, 93
SfcI	CTRYAG	1 cut(s)	349
SmiMI	CAYNNNNRTG	1 cut(s)	464
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
SsiI	CCGC	8 cut(s)	21, 59, 62, 65, 68, 238, 259, 346
SstI	GAGCTC	1 cut(s)	93
StyD4I	CCNGG	1 cut(s)	31
TaaI	ACNGT	2 cut(s)	126, 207
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	1 cut(s)	209
TauI	GCSGC	8 cut(s)	23, 62, 65, 68, 71, 241, 261, 348
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TseI	GCWGC	1 cut(s)	241
Tth111I	GACNNNGTC	1 cut(s)	176
Vha464I	CTTAAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.