Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003751

Physical Location & Seq

Genomic Coordinates Reverse (-)

46763560 .. 46765215

Gene Structure 1656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00252700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGAGCGTCCAAATGAAGGAGCTTTTGTTACAGCAAGTCATTGAGGGGCTTGATAGAGCTGTAGTGACAATGAAGAAGGGTGAGATAGCTGTTGTGATTATAGCCCCTAAGTATGGATTTGGCTCGTCAGAGTCCCAGCAGGAGTTGGCAGTGGTGCCTCCTAATTCGACCCTCTATTATGAGATCGAGCTTGTATCTTTTGTCAAGGACAAGGAATCATGGGACATGAATACTCTGAATAAAATGGAGGCTGCTGTGAAGGAAGGTCCAGTCCCATCTGCTGATACAGACAAACCATCTGCTCAAGTCTGGAGGACTCCTGGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0006457 GO:0006464 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010286 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0033554 GO:0034605 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051716 GO:0061077 GO:0070370 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04915 map04915

Pfam Domains

Protein Families

FKBP_C TPR_1 TPR_2 TPR_8

Protein Analysis

109

Amino Acids

12.03

Weight (kDa)

4.71

Isoelectric Point (pI)

49.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	11 - 65	2.5e-14	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25230 AT3G25230
fragaria_vesca	FvH4_2g18150 FvH4_2g18150 FvH4_2g18150
malus_domestica	MD05G1166200.v1.1 MD10G1156300.v1.1
prunus_persica	Prupe.8G194100_v2.0.a1
pyrus_communis	pycom05g15490 pycom10g13450
rosa_chinensis	RchiOBHm_Chr6g0283541 RchiOBHm_Chr7g0204881
rosa_laevigata	RLG00000003424 RLG00000012818
rosa_multiflora	Rmu_sc0005719.1_g000005 Rmu_sc0007194.1_g000004 Rmu_sc0031409.1_g000001 Rmu_sc0031410.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252700 Rroxscaffold_7G00185450
rosa_rugosa	Rorug06G0155300 Rorug06G0155400 Rorug06G0155500 Rorug06G0155600 Rorug07G0086300
rosa_samantha	Rh6AG267500 Rh6BG174200 Rh6BG270000 Rh6DG263400 Rh7AG217000 Rh7CG230200 Rh7DG224600
rosa_wichuraiana	Rw6G023160 Rw7G018810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	154
AfiI	CCNNNNNNNGG	2 cut(s)	16, 113
AjnI	CCWGG	1 cut(s)	319
AluBI	AGCT	4 cut(s)	22, 59, 89, 190
AluI	AGCT	4 cut(s)	22, 59, 89, 190
ApeKI	GCWGC	1 cut(s)	251
AspS9I	GGNCC	1 cut(s)	266
AsuHPI	GGTGA	1 cut(s)	92
AvaII	GGWCC	1 cut(s)	266
BanI	GGYRCC	1 cut(s)	154
BbvI	GCAGC	1 cut(s)	238
BccI	CCATC	2 cut(s)	283, 304
BciT130I	CCWGG	1 cut(s)	321
BfmI	CTRYAG	1 cut(s)	60
BisI	GCNGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	253
Bme1390I	CCNGG	1 cut(s)	321
Bme18I	GGWCC	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	266
BmiI	GGNNCC	1 cut(s)	156
BmrFI	CCNGG	1 cut(s)	321
BpuEI	CTTGAG	1 cut(s)	288
BsaXI	ACNNNNNCTCC	2 cut(s)	11, 41
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 113
Bse1I	ACTGG	1 cut(s)	269
BseBI	CCWGG	1 cut(s)	321
BseLI	CCNNNNNNNGG	2 cut(s)	16, 113
BseNI	ACTGG	1 cut(s)	269
BseXI	GCAGC	1 cut(s)	238
BseYI	CCCAGC	1 cut(s)	135
BshNI	GGYRCC	1 cut(s)	154
BslFI	GGGAC	3 cut(s)	118, 236, 257
BslI	CCNNNNNNNGG	2 cut(s)	16, 113
BsmFI	GGGAC	3 cut(s)	118, 236, 257
Bsp143I	GATC	1 cut(s)	183
BspLI	GGNNCC	1 cut(s)	156
BspT107I	GGYRCC	1 cut(s)	154
BsrI	ACTGG	1 cut(s)	269
BssMI	GATC	1 cut(s)	183
Bst2UI	CCWGG	1 cut(s)	321
BstDEI	CTNAG	1 cut(s)	108
BstKTI	GATC	1 cut(s)	186
BstMBI	GATC	1 cut(s)	183
BstNI	CCWGG	1 cut(s)	321
BstSCI	CCNGG	1 cut(s)	319
BstSFI	CTRYAG	1 cut(s)	60
BstV1I	GCAGC	1 cut(s)	238
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	1 cut(s)	156
Cfr13I	GGNCC	1 cut(s)	266
CviAII	CATG	2 cut(s)	219, 226
CviJI	RGCY	8 cut(s)	22, 49, 59, 89, 104, 123, 190, 251
CviKI_1	RGCY	8 cut(s)	22, 49, 59, 89, 104, 123, 190, 251
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	1 cut(s)	185
DpnII	GATC	1 cut(s)	183
Eco47I	GGWCC	1 cut(s)	266
EcoRII	CCWGG	1 cut(s)	319
FaeI	CATG	2 cut(s)	222, 229
FaiI	YATR	5 cut(s)	101, 114, 180, 220, 227
FaqI	GGGAC	3 cut(s)	118, 236, 257
FatI	CATG	2 cut(s)	218, 225
Fnu4HI	GCNGC	1 cut(s)	252
Fsp4HI	GCNGC	1 cut(s)	252
GluI	GCNGC	1 cut(s)	252
GsaI	CCCAGC	1 cut(s)	139
Hin1II	CATG	2 cut(s)	222, 229
HinfI	GANTC	3 cut(s)	131, 215, 316
HphI	GGTGA	1 cut(s)	92
Hpy188I	TCNGA	2 cut(s)	130, 237
Hpy188III	TCNNGA	1 cut(s)	310
HpyAV	CCTTC	4 cut(s)	10, 70, 253, 257
HpyF3I	CTNAG	1 cut(s)	108
Hsp92II	CATG	2 cut(s)	222, 229
Kzo9I	GATC	1 cut(s)	183
LmnI	GCTCC	1 cut(s)	19
LpnPI	CCDG	5 cut(s)	125, 149, 282, 295, 306
Lsp1109I	GCAGC	1 cut(s)	238
MaeIII	GTNAC	2 cut(s)	27, 64
MalI	GATC	1 cut(s)	185
MboI	GATC	1 cut(s)	183
MboII	GAAGA	1 cut(s)	85
MluCI	AATT	1 cut(s)	163
MlyI	GAGTC	2 cut(s)	140, 310
MnlI	CCTC	5 cut(s)	37, 168, 182, 241, 306
MspR9I	CCNGG	1 cut(s)	321
MvaI	CCWGG	1 cut(s)	321
NdeII	GATC	1 cut(s)	183
NlaIII	CATG	2 cut(s)	222, 229
NlaIV	GGNNCC	1 cut(s)	156
NmuCI	GTSAC	1 cut(s)	64
PfeI	GAWTC	1 cut(s)	215
PfoI	TCCNGGA	1 cut(s)	319
PkrI	GCNGC	1 cut(s)	253
PleI	GAGTC	2 cut(s)	139, 310
PpsI	GAGTC	2 cut(s)	139, 310
Psp6I	CCWGG	1 cut(s)	319
PspFI	CCCAGC	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	1 cut(s)	156
PspPI	GGNCC	1 cut(s)	266
SatI	GCNGC	1 cut(s)	252
Sau3AI	GATC	1 cut(s)	183
Sau96I	GGNCC	1 cut(s)	266
SchI	GAGTC	2 cut(s)	140, 310
ScrFI	CCNGG	1 cut(s)	321
SetI	ASST	5 cut(s)	24, 61, 91, 192, 268
SfcI	CTRYAG	1 cut(s)	60
SinI	GGWCC	1 cut(s)	266
SmlI	CTYRAG	1 cut(s)	303
SmoI	CTYRAG	1 cut(s)	303
Sse9I	AATT	1 cut(s)	163
StyD4I	CCNGG	1 cut(s)	319
TaqI	TCGA	2 cut(s)	167, 186
TasI	AATT	1 cut(s)	163
TfiI	GAWTC	1 cut(s)	215
TscAI	CASTG	1 cut(s)	156
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	1 cut(s)	251
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	3 cut(s)	29, 86, 242
TspRI	CASTG	1 cut(s)	156
VpaK11BI	GGWCC	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.