MD06G1037600.v1.1

E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0008811
Physical Location & Seq
Forward (+)
4824526 .. 4831076
6551 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1037600.v1.1.491

Sequence Viewer

Length: 1998 bp
ATGGGAAAGGACAGAGGAGGAGGTGGAAAACAAAAACTCCGACCTCCCAACGGTCCCGACTCACCTTCACTTCCTTCCTCCTCTTCTCAGCCAGAGAGGGTTGAACGCACCGCCTCCACAAGCTACTCCAAACCCCCAAATTTTATCCCAAACCCAAAGAAGCCTAGAAATCCTAATTGGGTTTCACGGAATCGGTGTGGCCCGCTGGTCAAACAGCAGTTTGTGAAGAAATCTGAGGTGGGTTCTTCCAACGATCAAGTGGGGTCTGGGCGTATTGTCGAGACAGCAACTGGGCAGCAAGAAGAACATGAAGAAAAGGAAGAAGAAGAAGAAAAAGAGAGAATCGCTATTGGTGTTGGTGTTGCGGGGGAAGACGTTGGGGTGTCGGATTCCAGAAAATCTCATGCGGATGATGATTATGATGTGGTGAGTAGATTGGAAGAGTTGCAGCTGGGTGTCCAAGAGCCCGAGTTGTCGGACGAGCAGATAAGGATCAATGATCAGGCTCAGGAGGATGAGTTGCTCGCTATGGAGTCCATTTATGGAGACCATTTTTGCATTTTTGAAAGACAAAGAGACCTTCGATCTTTTCAGATTCATATACACATTGAAACTCCTGGTGAAATTGCTGTTACTACAAAGTTGAATTCGTCGGATCATAAGACCAGAAGCAACAGTCCTGATGACTTCTCATATCCTTTCAATGTCCAGCATCTTCCAACAATTATATTGACGTGTATATTACCTAAATCATACCCAAGTCACCTACCACCTTATTTTTCAATATCTGTTCAGTGGCTGGATTCTAGTAAAATCTCCAATTTGTGTTCTATGCTGGATTCAATATGGACTGAACAATCAGGACAGGAGGTTATGTACCAATGGGTGGAATGGCTACAAAATTCTTCTCTCTCTTATCTGGGGTTTGATAAAGAAATAATTCTTGGTCCTTATGGTGTAAGGGCTGCTGTAGATAGACGTGCAGTTACAGGAAGTGTTTCTCCAGATGTTGATATTCCGGTTATTAAAAGTTACAACGATGATAAGCTACTTGAGAACTTTCACAATAATTTGCACGAGTGCTGCATCTGTTTCAGTGAGTATGCAGGCACTGAGTTTATCAGGCTACCATGCCGGCATTTCTTCTGTGGGGGATGCATGAAGACTTATTCCGACATGCATGTCAAGGAAGGCACCATACACAAACTGCAGTGTCCAGATGCAAAATGTGGGAGTATGATCCCACCAGGTTTGTTAAAACGATTGCTTGGTGATGAAGAGTTTGAACGATGGGATTCCTTAATGTTGACTAAAACACTAGAGTCAATGTCGGATGTCATGTACTGCCCAAGATGTGAAACTCCCTGCATAGTGGATGAAGACCAGCATGCCCAATGCGTAAAGTGCTTCTTTAGCTTTTGCACACTTTGCAGGGAGCGGCGGCATGTGGGTATTGAATGTATGACACCAGAGCTTAAGCTTCGTATCTTGCAGGAACGTCAGAGTTCATCTCAATTGAAAGATGATCAAAAGCGCAAAGAACTTGAGATGATCAATGAGGTTCTCAGTGTGAGGGAAATTCTTCGCGATGCAAAGCAATGCCCATCATGTAAGATGGCAATATCCAAAACTGGGGGCTGCAACAAGATGGTGTGTGAAAACTGTGGGCACTACTTCTGCTATCGCTGTGATAAGGAAATTGACGGATATGATCATTTCAGAGATGGTGCATGTGAACTATTCACACAAGAAGAAATTCAGAACTGGGAAGCACAGATGAATCCACGACAGGTTTTGGGTCAGATTCAAGCCCAACTCTTTGTTCAGAATGGTCAGGTGTGCCCTAATTGTCGTCAGTTTAATGCCAAGATTGGCAATAACAATCACATGTTCTGCTGGGCATGTCAAAACCACTATTGCTATTTGTGCAAGAAGATGGTGAGGCGAGGCTCTCATCATTACGGACCTAAAGGTTGCAAACAACACACGCAAGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006464 GO:0006807 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0023051 GO:0023052 GO:0030162 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0033143 GO:0035257 GO:0035258 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051427 GO:0051716 GO:0060255 GO:0060765 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1990234 GO:2000058 GO:2000060 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IBR RWD zf-C3HC4

Protein Analysis

666

Amino Acids

75.8

Weight (kDa)

5.81

Isoelectric Point (pI)

57.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RWD PF05773 168 - 302 9.5e-25 RWD domain
IBR PF01485 429 - 487 1.1e-09 IBR domain, a half RING-finger domain
IBR PF01485 529 - 567 1.2e-07 IBR domain, a half RING-finger domain
IBR_1 PF22191 531 - 566 3.1e-09 IBR domain
Rcat_RNF216 PF26200 532 - 579 1.1e-07 RNF216 Rcat domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1181
AccB1I GGYRCC 1 cut(s) 1193
AccB7I CCANNNNNTGG 1 cut(s) 886
AccBSI CCGCTC 1 cut(s) 1438
AccII CGCG 1 cut(s) 1587
AciI CCGC 6 cut(s) 111, 203, 365, 407, 1438, 1441
AclWI GGATC 3 cut(s) 500, 663, 1234
AcsI RAATTY 5 cut(s) 139, 646, 901, 1578, 1755
AfaI GTAC 2 cut(s) 878, 1343
AfiI CCNNNNNNNGG 3 cut(s) 50, 886, 1632
AflII CTTAAG 1 cut(s) 1475
AflIII ACRYGT 2 cut(s) 734, 1887
AjiI CACGTC 2 cut(s) 735, 980
AjnI CCWGG 2 cut(s) 616, 1246
AjuI GAANNNNNNNTTGG 6 cut(s) 160, 192, 927, 959, 1806, 1838
AluBI AGCT 6 cut(s) 123, 451, 1048, 1416, 1474, 1480
AluI AGCT 6 cut(s) 123, 451, 1048, 1416, 1474, 1480
Alw26I GTCTC 3 cut(s) 275, 540, 570
AlwI GGATC 3 cut(s) 500, 663, 1234
AlwNI CAGNNNCTG 3 cut(s) 290, 799, 1112
Ama87I CYCGRG 1 cut(s) 467
AoxI GGCC 1 cut(s) 199
ApeKI GCWGC 5 cut(s) 295, 448, 965, 1083, 1638
ApoI RAATTY 5 cut(s) 139, 646, 901, 1578, 1755
Asp700I GAANNNNTTC 4 cut(s) 939, 997, 1581, 1755
AspLEI GCGC 1 cut(s) 1536
AspS9I GGNCC 4 cut(s) 53, 200, 947, 1964
AsuHPI GGTGA 6 cut(s) 54, 439, 632, 755, 1283, 1951
AvaI CYCGRG 1 cut(s) 467
AvaII GGWCC 3 cut(s) 53, 947, 1964
BaeGI GKGCMC 2 cut(s) 1671, 1844
BanI GGYRCC 1 cut(s) 1193
BanII GRGCYC 1 cut(s) 468
BarI GAAGNNNNNNTAC 2 cut(s) 1182, 1214
BauI CACGAG 1 cut(s) 1076
BbsI GAAGAC 3 cut(s) 378, 1169, 1386
BbvI GCAGC 5 cut(s) 307, 460, 952, 1070, 1625
BccI CCATC 6 cut(s) 1284, 1609, 1612, 1642, 1718, 1930
BciT130I CCWGG 2 cut(s) 618, 1248
BclI TGATCA 4 cut(s) 499, 1525, 1551, 1711
BcoDI GTCTC 3 cut(s) 275, 540, 570
BfaI CTAG 3 cut(s) 165, 807, 1319
BfmI CTRYAG 2 cut(s) 969, 1208
BfrI CTTAAG 1 cut(s) 1475
BisI GCNGC 7 cut(s) 296, 449, 966, 1084, 1439, 1442, 1639
BlsI GCNGC 7 cut(s) 297, 450, 967, 1085, 1440, 1443, 1640
Bme1390I CCNGG 2 cut(s) 618, 1248
Bme18I GGWCC 3 cut(s) 53, 947, 1964
BmeT110I CYCGRG 1 cut(s) 467
BmgBI CACGTC 2 cut(s) 735, 980
BmgT120I GGNCC 4 cut(s) 53, 200, 947, 1964
BmiI GGNNCC 2 cut(s) 55, 1195
BmrFI CCNGG 2 cut(s) 618, 1248
BmrI ACTGGG 3 cut(s) 300, 1641, 1774
BmsI GCATC 5 cut(s) 721, 1095, 1145, 1210, 1579
BmuI ACTGGG 3 cut(s) 300, 1641, 1774
BpiI GAAGAC 3 cut(s) 378, 1169, 1386
BplI GAGNNNNNCTC 2 cut(s) 1495, 1527
BpmI CTGGAG 1 cut(s) 987
Bpu10I CCTNAGC 1 cut(s) 507
BpuEI CTTGAG 2 cut(s) 1073, 1565
BsaBI GATNNNNATC 1 cut(s) 491
BsaI GGTCTC 2 cut(s) 540, 570
BsaWI WCCGGW 1 cut(s) 1018
BsaXI ACNNNNNCTCC 6 cut(s) 21, 51, 503, 533, 860, 890
Bsc4I CCNNNNNNNGG 3 cut(s) 50, 886, 1632
Bse118I RCCGGY 1 cut(s) 1134
Bse1I ACTGG 3 cut(s) 295, 1636, 1769
Bse3DI GCAATG 1 cut(s) 1604
Bse8I GATNNNNATC 1 cut(s) 491
BseBI CCWGG 2 cut(s) 618, 1248
BseGI GGATG 5 cut(s) 415, 520, 1160, 1339, 1381
BseJI GATNNNNATC 1 cut(s) 491
BseLI CCNNNNNNNGG 3 cut(s) 50, 886, 1632
BseMI GCAATG 1 cut(s) 1604
BseMII CTCAG 5 cut(s) 101, 225, 521, 1104, 1579
BseNI ACTGG 3 cut(s) 295, 1636, 1769
BseRI GAGGAG 3 cut(s) 30, 33, 70
BseSI GKGCMC 2 cut(s) 1671, 1844
BseXI GCAGC 5 cut(s) 307, 460, 952, 1070, 1625
BseYI CCCAGC 2 cut(s) 451, 1896
BsgI GTGCAG 1 cut(s) 1002
Bsh1236I CGCG 1 cut(s) 1587
BshFI GGCC 1 cut(s) 201
BshNI GGYRCC 1 cut(s) 1193
BsiHKCI CYCGRG 1 cut(s) 467
BsiSI CCGG 2 cut(s) 1019, 1135
BslFI GGGAC 1 cut(s) 39
BslI CCNNNNNNNGG 3 cut(s) 50, 886, 1632
BsmAI GTCTC 3 cut(s) 275, 540, 570
BsmFI GGGAC 1 cut(s) 39
BsnI GGCC 1 cut(s) 201
Bso31I GGTCTC 2 cut(s) 540, 570
BsoBI CYCGRG 1 cut(s) 467
Bsp1286I GDGCHC 3 cut(s) 468, 1671, 1844
Bsp143I GATC 9 cut(s) 253, 492, 499, 584, 655, 1239, 1525, 1551, 1711
Bsp68I TCGCGA 1 cut(s) 1587
BspACI CCGC 6 cut(s) 111, 203, 365, 407, 1438, 1441
BspANI GGCC 1 cut(s) 201
BspCNI CTCAG 5 cut(s) 100, 226, 520, 1105, 1578
BspFNI CGCG 1 cut(s) 1587
BspLI GGNNCC 2 cut(s) 55, 1195
BspMAI CTGCAG 1 cut(s) 1212
BspPI GGATC 3 cut(s) 500, 663, 1234
BspT107I GGYRCC 1 cut(s) 1193
BspTI CTTAAG 1 cut(s) 1475
BspTNI GGTCTC 2 cut(s) 540, 570
BsrBI CCGCTC 1 cut(s) 1438
BsrDI GCAATG 1 cut(s) 1604
BsrFI RCCGGY 1 cut(s) 1134
BsrI ACTGG 3 cut(s) 295, 1636, 1769
BssAI RCCGGY 1 cut(s) 1134
BssMI GATC 9 cut(s) 253, 492, 499, 584, 655, 1239, 1525, 1551, 1711
BssSI CACGAG 1 cut(s) 1076
Bst2BI CACGAG 1 cut(s) 1076
Bst2UI CCWGG 2 cut(s) 618, 1248
Bst4CI ACNGT 3 cut(s) 53, 677, 1664
Bst6I CTCTTC 3 cut(s) 88, 435, 1272
BstAFI CTTAAG 1 cut(s) 1475
BstAPI GCANNNNNTGC 1 cut(s) 1428
BstC8I GCNNGC 5 cut(s) 203, 525, 1108, 1136, 1389
BstDEI CTNAG 5 cut(s) 87, 234, 507, 1113, 1565
BstF5I GGATG 5 cut(s) 415, 520, 1160, 1339, 1381
BstFNI CGCG 1 cut(s) 1587
BstHHI GCGC 1 cut(s) 1536
BstKTI GATC 9 cut(s) 256, 495, 502, 587, 658, 1242, 1528, 1554, 1714
BstMAI GTCTC 3 cut(s) 275, 540, 570
BstMBI GATC 9 cut(s) 253, 492, 499, 584, 655, 1239, 1525, 1551, 1711
BstMWI GCNNNNNNNGC 4 cut(s) 1404, 1413, 1428, 1926
BstNI CCWGG 2 cut(s) 618, 1248
BstNSI RCATGY 7 cut(s) 1180, 1184, 1391, 1448, 1734, 1891, 1905
BstSCI CCNGG 2 cut(s) 616, 1246
BstSFI CTRYAG 2 cut(s) 969, 1208
BstSLI GKGCMC 2 cut(s) 1671, 1844
BstUI CGCG 1 cut(s) 1587
BstV1I GCAGC 5 cut(s) 307, 460, 952, 1070, 1625
BstV2I GAAGAC 3 cut(s) 378, 1169, 1386
BsuRI GGCC 1 cut(s) 201
BtgZI GCGATG 1 cut(s) 1602
BtrI CACGTC 2 cut(s) 735, 980
BtsCI GGATG 5 cut(s) 415, 520, 1160, 1339, 1381
BtsI GCAGTG 1 cut(s) 1217
BtsIMutI CAGTG 5 cut(s) 800, 1102, 1110, 1217, 1573
BtuMI TCGCGA 1 cut(s) 1587
Cac8I GCNNGC 5 cut(s) 203, 525, 1108, 1136, 1389
CaiI CAGNNNCTG 3 cut(s) 290, 799, 1112
CfoI GCGC 1 cut(s) 1536
Cfr10I RCCGGY 1 cut(s) 1134
Cfr13I GGNCC 4 cut(s) 53, 200, 947, 1964
CsiI ACCWGGT 1 cut(s) 1246
Csp6I GTAC 2 cut(s) 877, 1342
CspCI CAANNNNNGTGG 2 cut(s) 1233, 1268
CviQI GTAC 2 cut(s) 877, 1342
DdeI CTNAG 5 cut(s) 87, 234, 507, 1113, 1565
DpnI GATC 9 cut(s) 255, 494, 501, 586, 657, 1241, 1527, 1553, 1713
DpnII GATC 9 cut(s) 253, 492, 499, 584, 655, 1239, 1525, 1551, 1711
DrdI GACNNNNNNGTC 1 cut(s) 1181
DseDI GACNNNNNNGTC 1 cut(s) 1181
Eam1104I CTCTTC 3 cut(s) 88, 435, 1272
EarI CTCTTC 3 cut(s) 88, 435, 1272
Eco24I GRGCYC 1 cut(s) 468
Eco31I GGTCTC 2 cut(s) 540, 570
Eco47I GGWCC 3 cut(s) 53, 947, 1964
Eco88I CYCGRG 1 cut(s) 467
EcoRI GAATTC 1 cut(s) 646
EcoRII CCWGG 2 cut(s) 616, 1246
EcoT22I ATGCAT 2 cut(s) 1160, 1182
EcoT38I GRGCYC 1 cut(s) 468
FalI AAGNNNNNCTT 2 cut(s) 1394, 1426
FaqI GGGAC 1 cut(s) 39
FauI CCCGC 2 cut(s) 210, 358
FbaI TGATCA 4 cut(s) 499, 1525, 1551, 1711
Fnu4HI GCNGC 7 cut(s) 296, 449, 966, 1084, 1439, 1442, 1639
FokI GGATG 5 cut(s) 422, 527, 1167, 1346, 1388
FriOI GRGCYC 1 cut(s) 468
Fsp4HI GCNGC 7 cut(s) 296, 449, 966, 1084, 1439, 1442, 1639
FspBI CTAG 3 cut(s) 165, 807, 1319
GlaI GCGC 1 cut(s) 1535
GluI GCNGC 7 cut(s) 296, 449, 966, 1084, 1439, 1442, 1639
GsaI CCCAGC 2 cut(s) 455, 1900
GsuI CTGGAG 1 cut(s) 987
HaeIII GGCC 1 cut(s) 201
HapII CCGG 2 cut(s) 1019, 1135
HhaI GCGC 1 cut(s) 1536
Hin6I GCGC 1 cut(s) 1534
HinP1I GCGC 1 cut(s) 1534
HincII GTYRAC 1 cut(s) 1308
HindII GTYRAC 1 cut(s) 1308
HindIII AAGCTT 1 cut(s) 1478
HpaII CCGG 2 cut(s) 1019, 1135
HphI GGTGA 6 cut(s) 54, 439, 632, 755, 1283, 1951
Hpy166II GTNNAC 2 cut(s) 1308, 1736
Hpy188III TCNNGA 9 cut(s) 56, 280, 393, 509, 680, 861, 1004, 1217, 1586
Hpy8I GTNNAC 2 cut(s) 1308, 1736
Hpy99I CGWCG 1 cut(s) 655
HpyAV CCTTC 4 cut(s) 75, 84, 590, 1184
HpyCH4III ACNGT 3 cut(s) 53, 677, 1664
HpyCH4IV ACGT 4 cut(s) 375, 734, 979, 1498
HpyF10VI GCNNNNNNNGC 4 cut(s) 1404, 1413, 1428, 1926
HpyF3I CTNAG 5 cut(s) 87, 234, 507, 1113, 1565
HpySE526I ACGT 4 cut(s) 375, 734, 979, 1498
HspAI GCGC 1 cut(s) 1534
KroI GCCGGC 1 cut(s) 1134
KroNI GCCGGC 1 cut(s) 1136
Ksp22I TGATCA 4 cut(s) 499, 1525, 1551, 1711
Kzo9I GATC 9 cut(s) 253, 492, 499, 584, 655, 1239, 1525, 1551, 1711
LmnI GCTCC 1 cut(s) 1435
Lsp1109I GCAGC 5 cut(s) 307, 460, 952, 1070, 1625
LweI GCATC 5 cut(s) 721, 1095, 1145, 1210, 1579
MabI ACCWGGT 1 cut(s) 1246
MaeI CTAG 3 cut(s) 165, 807, 1319
MaeII ACGT 4 cut(s) 375, 734, 979, 1498
MaeIII GTNAC 4 cut(s) 631, 761, 985, 1031
MalI GATC 9 cut(s) 255, 494, 501, 586, 657, 1241, 1527, 1553, 1713
MbiI CCGCTC 1 cut(s) 1438
MboI GATC 9 cut(s) 253, 492, 499, 584, 655, 1239, 1525, 1551, 1711
MfeI CAATTG 1 cut(s) 1514
MhlI GDGCHC 3 cut(s) 468, 1671, 1844
MlyI GAGTC 3 cut(s) 53, 542, 1331
MmeI TCCRAC 8 cut(s) 64, 273, 366, 456, 633, 743, 1197, 1311
Mph1103I ATGCAT 2 cut(s) 1160, 1182
MroNI GCCGGC 1 cut(s) 1134
MroXI GAANNNNTTC 4 cut(s) 939, 997, 1581, 1755
MseI TTAA 5 cut(s) 1026, 1256, 1301, 1476, 1860
MslI CAYNNNNRTG 1 cut(s) 408
MspA1I CMGCKG 2 cut(s) 205, 451
MspCI CTTAAG 1 cut(s) 1475
MspI CCGG 2 cut(s) 1019, 1135
MspR9I CCNGG 2 cut(s) 618, 1248
MunI CAATTG 1 cut(s) 1514
MvaI CCWGG 2 cut(s) 618, 1248
MvnI CGCG 1 cut(s) 1587
MwoI GCNNNNNNNGC 4 cut(s) 1404, 1413, 1428, 1926
NaeI GCCGGC 1 cut(s) 1136
NdeII GATC 9 cut(s) 253, 492, 499, 584, 655, 1239, 1525, 1551, 1711
NgoMIV GCCGGC 1 cut(s) 1134
NlaIV GGNNCC 2 cut(s) 55, 1195
NmuCI GTSAC 1 cut(s) 761
NruI TCGCGA 1 cut(s) 1587
NsiI ATGCAT 2 cut(s) 1160, 1182
NspI RCATGY 7 cut(s) 1180, 1184, 1391, 1448, 1734, 1891, 1905
PaeI GCATGC 1 cut(s) 1391
PciI ACATGT 1 cut(s) 1887
PdiI GCCGGC 1 cut(s) 1136
PdmI GAANNNNTTC 4 cut(s) 939, 997, 1581, 1755
PfeI GAWTC 9 cut(s) 190, 342, 389, 595, 803, 839, 1295, 1780, 1804
PflMI CCANNNNNTGG 1 cut(s) 886
PkrI GCNGC 7 cut(s) 297, 450, 967, 1085, 1440, 1443, 1640
PleI GAGTC 3 cut(s) 53, 541, 1330
PpsI GAGTC 3 cut(s) 53, 541, 1330
PscI ACATGT 1 cut(s) 1887
Psp6I CCWGG 2 cut(s) 616, 1246
PspFI CCCAGC 2 cut(s) 451, 1896
PspGI CCWGG 2 cut(s) 616, 1246
PspN4I GGNNCC 2 cut(s) 55, 1195
PspPI GGNCC 4 cut(s) 53, 200, 947, 1964
PstI CTGCAG 1 cut(s) 1212
PstNI CAGNNNCTG 3 cut(s) 290, 799, 1112
PvuII CAGCTG 1 cut(s) 451
RruI TCGCGA 1 cut(s) 1587
RsaI GTAC 2 cut(s) 878, 1343
RsaNI GTAC 2 cut(s) 877, 1342
RseI CAYNNNNRTG 1 cut(s) 408
SaqAI TTAA 5 cut(s) 1026, 1256, 1301, 1476, 1860
SatI GCNGC 7 cut(s) 296, 449, 966, 1084, 1439, 1442, 1639
Sau3AI GATC 9 cut(s) 253, 492, 499, 584, 655, 1239, 1525, 1551, 1711
Sau96I GGNCC 4 cut(s) 53, 200, 947, 1964
SchI GAGTC 3 cut(s) 53, 542, 1331
ScrFI CCNGG 2 cut(s) 618, 1248
SduI GDGCHC 3 cut(s) 468, 1671, 1844
SexAI ACCWGGT 1 cut(s) 1246
SfaNI GCATC 5 cut(s) 721, 1095, 1145, 1210, 1579
SfcI CTRYAG 2 cut(s) 969, 1208
SinI GGWCC 3 cut(s) 53, 947, 1964
SmiMI CAYNNNNRTG 1 cut(s) 408
SmlI CTYRAG 3 cut(s) 1052, 1475, 1544
SmoI CTYRAG 3 cut(s) 1052, 1475, 1544
SphI GCATGC 1 cut(s) 1391
SsiI CCGC 6 cut(s) 111, 203, 365, 407, 1438, 1441
SspMI CTAG 3 cut(s) 165, 807, 1319
StyD4I CCNGG 2 cut(s) 616, 1246
TaaI ACNGT 3 cut(s) 53, 677, 1664
TaiI ACGT 4 cut(s) 378, 737, 982, 1501
TaqI TCGA 2 cut(s) 279, 583
TatI WGTACW 1 cut(s) 1341
TauI GCSGC 2 cut(s) 1441, 1444
TfiI GAWTC 9 cut(s) 190, 342, 389, 595, 803, 839, 1295, 1780, 1804
Tru1I TTAA 5 cut(s) 1026, 1256, 1301, 1476, 1860
Tru9I TTAA 5 cut(s) 1026, 1256, 1301, 1476, 1860
TscAI CASTG 5 cut(s) 800, 1102, 1117, 1217, 1573
TseFI GTSAC 1 cut(s) 761
TseI GCWGC 5 cut(s) 295, 448, 965, 1083, 1638
Tsp45I GTSAC 1 cut(s) 761
TspDTI ATGAA 7 cut(s) 324, 587, 1175, 1290, 1392, 1497, 1793
TspGWI ACGGA 3 cut(s) 202, 1719, 1977
TspRI CASTG 5 cut(s) 800, 1102, 1117, 1217, 1573
Van91I CCANNNNNTGG 1 cut(s) 886
Vha464I CTTAAG 1 cut(s) 1475
VpaK11BI GGWCC 3 cut(s) 53, 947, 1964
XapI RAATTY 5 cut(s) 139, 646, 901, 1578, 1755
XceI RCATGY 7 cut(s) 1180, 1184, 1391, 1448, 1734, 1891, 1905
XcmI CCANNNNNNNNNTGG 1 cut(s) 256
XmnI GAANNNNTTC 4 cut(s) 939, 997, 1581, 1755
XspI CTAG 3 cut(s) 165, 807, 1319
Zsp2I ATGCAT 2 cut(s) 1160, 1182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.