Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0008811

Physical Location & Seq

Genomic Coordinates Forward (+)

3957930 .. 3958463

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g03120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGGAAAGGACAGAGGAGGAGGAAGTGGAAAACAAAAGCTCCGACCTCCCAACGGTCCTGACTCACCTTCACTTCCTTGCTCCTCTTCCCAGCCAGAGAGGGTTGAACCCACCGCCTTCACAAGCCACTCCAAACCCCCAAATTTTATCCCAAACCCAAAGAAGCCCAGAAATCCCAATTGGGTTTCACGGAATCGGCGTGGCCCGCTGGTCAAACAGCAGTTTGTGAAGAAATCTGAGGTGGGCTCTTCCAACGATCAAGTGGGGTCTGGGCGTATTGTCGAGACAGCAACTGGGCAGCAAGAAGAACATGAAGAAAAGGAAGAAGAAGAAGAAGAAAAAGAGAGAATCGCTATTGGTGTTGGTGTTGCGGGGGAAGACGTTGGGGCGTCGGAGTCCAGAAAATCTCATGAGGATGATGATTATGATGTGGTGAGTAGATTGGAAGAGTTGCAGCTGGGTGTCCAAGAGCCCGAGTTGTCGGACGAGCAGCTAAGGATCACTGATCAGGCTCAGGCGGATGAGGTAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006464 GO:0006807 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0023051 GO:0023052 GO:0030162 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0033143 GO:0035257 GO:0035258 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051427 GO:0051716 GO:0060255 GO:0060765 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1990234 GO:2000058 GO:2000060 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RWD zf-C3HC4

Protein Analysis

178

Amino Acids

19.48

Weight (kDa)

4.86

Isoelectric Point (pI)

57.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32340
fragaria_vesca	FvH4_5g22580
malus_domestica	MD06G1037600.v1.1
prunus_persica	Prupe.5G031400_v2.0.a1
pyrus_communis	pycom06g03120 pycom06g03130
rosa_chinensis	RchiOBHm_Chr7g0210351
rosa_laevigata	RLG00000003044
rosa_multiflora	Rmu_sc0003807.1_g000003
rosa_roxburghii	Rroxscaffold_1G00030310 Rroxscaffold_1G00030320 Rroxscaffold_1G00030790 Rroxscaffold_1G00030800 Rroxscaffold_1G00038480 Rroxscaffold_3G00248360 Rroxscaffold_5G00369280
rosa_rugosa	Rorug07G0121300
rosa_samantha	Rh2BG360900 Rh7AG254000 Rh7BG248900 Rh7CG270800 Rh7DG261500
rosa_wichuraiana	Rw7G021650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	114, 206, 371, 518
AclWI	GGATC	1 cut(s)	506
AcsI	RAATTY	1 cut(s)	142
AcyI	GRCGYC	1 cut(s)	389
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	1 cut(s)	107
AjuI	GAANNNNNNNTTGG	2 cut(s)	163, 195
AluBI	AGCT	3 cut(s)	40, 457, 493
AluI	AGCT	3 cut(s)	40, 457, 493
Alw26I	GTCTC	1 cut(s)	278
AlwI	GGATC	1 cut(s)	506
AlwNI	CAGNNNCTG	1 cut(s)	293
Ama87I	CYCGRG	1 cut(s)	473
AoxI	GGCC	1 cut(s)	202
ApeKI	GCWGC	3 cut(s)	298, 454, 490
ApoI	RAATTY	1 cut(s)	142
AspS9I	GGNCC	2 cut(s)	56, 203
AsuHPI	GGTGA	2 cut(s)	57, 445
AvaI	CYCGRG	1 cut(s)	473
AvaII	GGWCC	1 cut(s)	56
BanII	GRGCYC	2 cut(s)	248, 474
BbsI	GAAGAC	1 cut(s)	384
BbvI	GCAGC	3 cut(s)	310, 466, 502
BclI	TGATCA	1 cut(s)	505
BcoDI	GTCTC	1 cut(s)	278
BisI	GCNGC	3 cut(s)	299, 455, 491
BlsI	GCNGC	3 cut(s)	300, 456, 492
Bme18I	GGWCC	1 cut(s)	56
BmeT110I	CYCGRG	1 cut(s)	473
BmgT120I	GGNCC	2 cut(s)	56, 203
BmrI	ACTGGG	1 cut(s)	303
BmuI	ACTGGG	1 cut(s)	303
BpiI	GAAGAC	1 cut(s)	384
BplI	GAGNNNNNCTC	2 cut(s)	230, 262
Bpu10I	CCTNAGC	2 cut(s)	494, 513
BsaHI	GRCGYC	1 cut(s)	389
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	298
BseGI	GGATG	2 cut(s)	421, 526
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMII	CTCAG	2 cut(s)	228, 527
BseNI	ACTGG	1 cut(s)	298
BseRI	GAGGAG	3 cut(s)	30, 33, 73
BseXI	GCAGC	3 cut(s)	310, 466, 502
BseYI	CCCAGC	2 cut(s)	90, 457
BshFI	GGCC	1 cut(s)	204
BsiHKCI	CYCGRG	1 cut(s)	473
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmAI	GTCTC	1 cut(s)	278
BsnI	GGCC	1 cut(s)	204
BsoBI	CYCGRG	1 cut(s)	473
Bsp1286I	GDGCHC	2 cut(s)	248, 474
Bsp143I	GATC	3 cut(s)	256, 498, 505
BspACI	CCGC	4 cut(s)	114, 206, 371, 518
BspANI	GGCC	1 cut(s)	204
BspCNI	CTCAG	2 cut(s)	229, 526
BspHI	TCATGA	1 cut(s)	409
BspPI	GGATC	1 cut(s)	506
BspQI	GCTCTTC	1 cut(s)	253
BsrI	ACTGG	1 cut(s)	298
BssMI	GATC	3 cut(s)	256, 498, 505
BssNI	GRCGYC	1 cut(s)	389
Bst4CI	ACNGT	1 cut(s)	56
Bst6I	CTCTTC	3 cut(s)	91, 253, 441
BstACI	GRCGYC	1 cut(s)	389
BstC8I	GCNNGC	1 cut(s)	206
BstDEI	CTNAG	3 cut(s)	237, 494, 513
BstF5I	GGATG	2 cut(s)	421, 526
BstKTI	GATC	3 cut(s)	259, 501, 508
BstMAI	GTCTC	1 cut(s)	278
BstMBI	GATC	3 cut(s)	256, 498, 505
BstMWI	GCNNNNNNNGC	1 cut(s)	205
BstV1I	GCAGC	3 cut(s)	310, 466, 502
BstV2I	GAAGAC	1 cut(s)	384
BsuRI	GGCC	1 cut(s)	204
BtsCI	GGATG	2 cut(s)	421, 526
BtsIMutI	CAGTG	1 cut(s)	501
Cac8I	GCNNGC	1 cut(s)	206
CaiI	CAGNNNCTG	1 cut(s)	293
CciI	TCATGA	1 cut(s)	409
Cfr13I	GGNCC	2 cut(s)	56, 203
CseI	GACGC	1 cut(s)	378
CviAII	CATG	2 cut(s)	311, 410
DdeI	CTNAG	3 cut(s)	237, 494, 513
DpnI	GATC	3 cut(s)	258, 500, 507
DpnII	GATC	3 cut(s)	256, 498, 505
Eam1104I	CTCTTC	3 cut(s)	91, 253, 441
EarI	CTCTTC	3 cut(s)	91, 253, 441
EciI	GGCGGA	1 cut(s)	533
Eco24I	GRGCYC	2 cut(s)	248, 474
Eco47I	GGWCC	1 cut(s)	56
Eco88I	CYCGRG	1 cut(s)	473
EcoT38I	GRGCYC	2 cut(s)	248, 474
FaeI	CATG	2 cut(s)	314, 413
FaiI	YATR	4 cut(s)	312, 411, 426, 532
FatI	CATG	2 cut(s)	310, 409
FauI	CCCGC	2 cut(s)	213, 364
FbaI	TGATCA	1 cut(s)	505
Fnu4HI	GCNGC	3 cut(s)	299, 455, 491
FokI	GGATG	1 cut(s)	428
FriOI	GRGCYC	2 cut(s)	248, 474
Fsp4HI	GCNGC	3 cut(s)	299, 455, 491
GluI	GCNGC	3 cut(s)	299, 455, 491
GsaI	CCCAGC	2 cut(s)	94, 461
HaeIII	GGCC	1 cut(s)	204
HgaI	GACGC	1 cut(s)	378
Hin1I	GRCGYC	1 cut(s)	389
Hin1II	CATG	2 cut(s)	314, 413
HinfI	GANTC	4 cut(s)	62, 193, 348, 395
HphI	GGTGA	2 cut(s)	57, 445
Hpy188I	TCNGA	4 cut(s)	44, 238, 394, 484
Hpy188III	TCNNGA	4 cut(s)	59, 283, 399, 410
Hpy99I	CGWCG	1 cut(s)	394
HpyAV	CCTTC	2 cut(s)	78, 127
HpyCH4III	ACNGT	1 cut(s)	56
HpyCH4IV	ACGT	1 cut(s)	381
HpyCH4V	TGCA	1 cut(s)	454
HpyF10VI	GCNNNNNNNGC	1 cut(s)	205
HpyF3I	CTNAG	3 cut(s)	237, 494, 513
HpySE526I	ACGT	1 cut(s)	381
Hsp92I	GRCGYC	1 cut(s)	389
Hsp92II	CATG	2 cut(s)	314, 413
Ksp22I	TGATCA	1 cut(s)	505
Kzo9I	GATC	3 cut(s)	256, 498, 505
LguI	GCTCTTC	1 cut(s)	253
LmnI	GCTCC	2 cut(s)	45, 86
Lsp1109I	GCAGC	3 cut(s)	310, 466, 502
MaeII	ACGT	1 cut(s)	381
MalI	GATC	3 cut(s)	258, 500, 507
MboI	GATC	3 cut(s)	256, 498, 505
MfeI	CAATTG	1 cut(s)	178
MhlI	GDGCHC	2 cut(s)	248, 474
MluCI	AATT	2 cut(s)	142, 178
MlyI	GAGTC	2 cut(s)	56, 404
MmeI	TCCRAC	4 cut(s)	67, 276, 372, 462
MnlI	CCTC	9 cut(s)	8, 11, 14, 57, 93, 94, 232, 406, 517
MslI	CAYNNNNRTG	1 cut(s)	414
MspA1I	CMGCKG	2 cut(s)	208, 457
MunI	CAATTG	1 cut(s)	178
MwoI	GCNNNNNNNGC	1 cut(s)	205
NdeII	GATC	3 cut(s)	256, 498, 505
NlaIII	CATG	2 cut(s)	314, 413
PagI	TCATGA	1 cut(s)	409
PciSI	GCTCTTC	1 cut(s)	253
PcsI	WCGNNNNNNNCGW	1 cut(s)	196
PfeI	GAWTC	2 cut(s)	193, 348
PkrI	GCNGC	3 cut(s)	300, 456, 492
PleI	GAGTC	2 cut(s)	56, 403
PpsI	GAGTC	2 cut(s)	56, 403
PspFI	CCCAGC	2 cut(s)	90, 457
PspPI	GGNCC	2 cut(s)	56, 203
PstNI	CAGNNNCTG	1 cut(s)	293
PvuII	CAGCTG	1 cut(s)	457
RseI	CAYNNNNRTG	1 cut(s)	414
SapI	GCTCTTC	1 cut(s)	253
SatI	GCNGC	3 cut(s)	299, 455, 491
Sau3AI	GATC	3 cut(s)	256, 498, 505
Sau96I	GGNCC	2 cut(s)	56, 203
SchI	GAGTC	2 cut(s)	56, 404
SduI	GDGCHC	2 cut(s)	248, 474
SetI	ASST	8 cut(s)	42, 49, 70, 243, 384, 459, 495, 528
SinI	GGWCC	1 cut(s)	56
SmiMI	CAYNNNNRTG	1 cut(s)	414
Sse9I	AATT	2 cut(s)	142, 178
SsiI	CCGC	4 cut(s)	114, 206, 371, 518
TaaI	ACNGT	1 cut(s)	56
TaiI	ACGT	1 cut(s)	384
TaqI	TCGA	1 cut(s)	282
TasI	AATT	2 cut(s)	142, 178
TfiI	GAWTC	2 cut(s)	193, 348
TscAI	CASTG	1 cut(s)	508
TseI	GCWGC	3 cut(s)	298, 454, 490
TspDTI	ATGAA	1 cut(s)	327
TspGWI	ACGGA	1 cut(s)	205
TspRI	CASTG	1 cut(s)	508
VpaK11BI	GGWCC	1 cut(s)	56
XapI	RAATTY	1 cut(s)	142
XcmI	CCANNNNNNNNNTGG	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.