Rroxscaffold_5G00369280

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0008811
Physical Location & Seq
Forward (+)
51100695 .. 51105599
4905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00369280.1

Sequence Viewer

Length: 375 bp
ATGGAAGCAAAAGGGAGCAGCTCAAGCATTGTAAGAAGCATGGAGGTAGAGTATGAAAGTGGTCGGCATCCGGTATTCAAACCTCGGTTTGTCAAGAAATACGAGTCGGGTTTTTCTTCGAATGGAGTAGTGGCTTCTTCTTCTTCTTCTACGAATGAACAAGTGGGTTCTTTGATTGATGAGGTGGGGTCTCGAGTATTATTGGTGAGGGAGAAAGTAGGCGAGAGCGCGAAACAAGAAGAAGAGAGAGTTGGGGTTAGTGTAGAGAATGTTGCTCGGGTGTCCGAGCATGGGAAAGAGGAGGATGATGCTGTGACAAGATTGGAAGAGCTGCAGCGCGGTGTCGAAGAGCCGGAGTTGTCGAAGAGCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.56

Weight (kDa)

4.97

Isoelectric Point (pI)

47.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 230, 339
AciI CCGC 1 cut(s) 339
AfiI CCNNNNNNNGG 1 cut(s) 291
AgsI TTSAA 1 cut(s) 79
AjuI GAANNNNNNNTTGG 2 cut(s) 234, 266
AluBI AGCT 3 cut(s) 21, 331, 372
AluI AGCT 3 cut(s) 21, 331, 372
Alw26I GTCTC 1 cut(s) 195
Ama87I CYCGRG 2 cut(s) 192, 276
ApeKI GCWGC 4 cut(s) 18, 331, 334, 369
AspLEI GCGC 2 cut(s) 230, 339
AsuHPI GGTGA 1 cut(s) 217
AsuII TTCGAA 1 cut(s) 119
AvaI CYCGRG 2 cut(s) 192, 276
BbvI GCAGC 3 cut(s) 30, 318, 346
BcoDI GTCTC 1 cut(s) 195
BfmI CTRYAG 1 cut(s) 332
BisI GCNGC 4 cut(s) 19, 332, 335, 370
BlsI GCNGC 4 cut(s) 20, 333, 336, 371
BmeT110I CYCGRG 2 cut(s) 192, 276
BmsI GCATC 2 cut(s) 76, 298
Bpu14I TTCGAA 1 cut(s) 119
BpuEI CTTGAG 1 cut(s) 7
BsaI GGTCTC 1 cut(s) 195
BsaJI CCNNGG 1 cut(s) 83
BsaWI WCCGGW 1 cut(s) 70
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bsc4I CCNNNNNNNGG 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 83
BseGI GGATG 2 cut(s) 67, 310
BseLI CCNNNNNNNGG 1 cut(s) 291
BseRI GAGGAG 1 cut(s) 314
BseXI GCAGC 3 cut(s) 30, 318, 346
Bsh1236I CGCG 2 cut(s) 230, 339
BsiHKCI CYCGRG 2 cut(s) 192, 276
BsiSI CCGG 2 cut(s) 71, 353
BslI CCNNNNNNNGG 1 cut(s) 291
BsmAI GTCTC 1 cut(s) 195
Bso31I GGTCTC 1 cut(s) 195
BsoBI CYCGRG 2 cut(s) 192, 276
Bsp119I TTCGAA 1 cut(s) 119
BspACI CCGC 1 cut(s) 339
BspFNI CGCG 2 cut(s) 230, 339
BspMAI CTGCAG 1 cut(s) 336
BspQI GCTCTTC 3 cut(s) 321, 342, 359
BspT104I TTCGAA 1 cut(s) 119
BspTNI GGTCTC 1 cut(s) 195
BssECI CCNNGG 1 cut(s) 83
Bst6I CTCTTC 4 cut(s) 237, 321, 342, 359
BstBI TTCGAA 1 cut(s) 119
BstF5I GGATG 2 cut(s) 67, 310
BstFNI CGCG 2 cut(s) 230, 339
BstHHI GCGC 2 cut(s) 230, 339
BstMAI GTCTC 1 cut(s) 195
BstMWI GCNNNNNNNGC 1 cut(s) 24
BstSFI CTRYAG 1 cut(s) 332
BstUI CGCG 2 cut(s) 230, 339
BstV1I GCAGC 3 cut(s) 30, 318, 346
BtsCI GGATG 2 cut(s) 67, 310
CfoI GCGC 2 cut(s) 230, 339
CviAII CATG 2 cut(s) 40, 290
CviJI RGCY 5 cut(s) 21, 134, 331, 352, 372
CviKI_1 RGCY 5 cut(s) 21, 134, 331, 352, 372
Eam1104I CTCTTC 4 cut(s) 237, 321, 342, 359
EarI CTCTTC 4 cut(s) 237, 321, 342, 359
Eco31I GGTCTC 1 cut(s) 195
Eco88I CYCGRG 2 cut(s) 192, 276
FaeI CATG 2 cut(s) 43, 293
FaiI YATR 3 cut(s) 41, 54, 291
FatI CATG 2 cut(s) 39, 289
Fnu4HI GCNGC 4 cut(s) 19, 332, 335, 370
FokI GGATG 2 cut(s) 54, 317
Fsp4HI GCNGC 4 cut(s) 19, 332, 335, 370
GlaI GCGC 2 cut(s) 229, 338
GluI GCNGC 4 cut(s) 19, 332, 335, 370
HapII CCGG 2 cut(s) 71, 353
HhaI GCGC 2 cut(s) 230, 339
Hin1II CATG 2 cut(s) 43, 293
Hin6I GCGC 2 cut(s) 228, 337
HinP1I GCGC 2 cut(s) 228, 337
HinfI GANTC 1 cut(s) 104
HpaII CCGG 2 cut(s) 71, 353
HphI GGTGA 1 cut(s) 217
Hpy188I TCNGA 1 cut(s) 286
Hpy188III TCNNGA 2 cut(s) 94, 192
HpyCH4V TGCA 1 cut(s) 334
HpyF10VI GCNNNNNNNGC 1 cut(s) 24
Hsp92II CATG 2 cut(s) 43, 293
HspAI GCGC 2 cut(s) 228, 337
LguI GCTCTTC 3 cut(s) 321, 342, 359
LmnI GCTCC 1 cut(s) 15
LpnPI CCDG 2 cut(s) 84, 366
Lsp1109I GCAGC 3 cut(s) 30, 318, 346
LweI GCATC 2 cut(s) 76, 298
MaeIII GTNAC 1 cut(s) 313
MboII GAAGA 9 cut(s) 108, 129, 132, 135, 138, 251, 254, 338, 359
MlyI GAGTC 1 cut(s) 113
MnlI CCTC 6 cut(s) 37, 93, 175, 201, 292, 295
MspA1I CMGCKG 1 cut(s) 372
MspI CCGG 2 cut(s) 71, 353
MvnI CGCG 2 cut(s) 230, 339
MwoI GCNNNNNNNGC 1 cut(s) 24
NlaIII CATG 2 cut(s) 43, 293
NmuCI GTSAC 1 cut(s) 313
NspV TTCGAA 1 cut(s) 119
PaeR7I CTCGAG 1 cut(s) 192
PciSI GCTCTTC 3 cut(s) 321, 342, 359
PkrI GCNGC 4 cut(s) 20, 333, 336, 371
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
PstI CTGCAG 1 cut(s) 336
PvuII CAGCTG 1 cut(s) 372
SapI GCTCTTC 3 cut(s) 321, 342, 359
SatI GCNGC 4 cut(s) 19, 332, 335, 370
SchI GAGTC 1 cut(s) 113
SetI ASST 6 cut(s) 23, 48, 85, 186, 333, 374
SfaNI GCATC 2 cut(s) 76, 298
SfcI CTRYAG 1 cut(s) 332
Sfr274I CTCGAG 1 cut(s) 192
SfuI TTCGAA 1 cut(s) 119
SlaI CTCGAG 1 cut(s) 192
SmlI CTYRAG 2 cut(s) 22, 192
SmoI CTYRAG 2 cut(s) 22, 192
SsiI CCGC 1 cut(s) 339
TaqI TCGA 4 cut(s) 119, 193, 345, 362
TseFI GTSAC 1 cut(s) 313
TseI GCWGC 4 cut(s) 18, 331, 334, 369
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 2 cut(s) 69, 171
XhoI CTCGAG 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.