Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0008811

Physical Location & Seq

Genomic Coordinates Forward (+)

55966964 .. 55967937

Gene Structure 974 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00038480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGAGATTGTGGTCTCCGGCCACCACCACTTGTCACCGCCACCTTTGCTTGAAACAGCTCCCAATTCCGATCTAAAGCGAAGCTCAACGCCGGCATGCGTTAACTTCAACCTCTGCACGCTCTCCTCAAGTACGAAGAGCTACTGTTCCTCGAAGACCATCGACCTCGATCATTCCTCAACTTCATCAACCGGAGCTGATGGTTATGATCTCCAAGCCGATCTCTATAGTAGCAATTGCACTTGGGGTGAGCTTCGGTTGTGCCTTTCGATGCTCCTACCACTTGGAATCCTGCAGTACGAAAGAAGCGAGAAGAGCCAAACCATTACGAACATCGGTGACATTCAAGAAGAGGGACTTGTGAGCTTAGGCAACCTCGAAACTTCACTTTCAAAGAGCTTCAAGTTGCCACGGACCATTTTAGCTCCAAGAACATCGGGTCTTTGGAGGTTTTGGGAATGCGTACAAGGGAAAGCTAGGGGATGGGACTATGGTGGCAATGAAACGACTCAAGGATGTAACGGGAACAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004713 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009987 GO:0010150 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018108 GO:0018193 GO:0018212 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

177

Amino Acids

19.28

Weight (kDa)

5.52

Isoelectric Point (pI)

48.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32340
fragaria_vesca	FvH4_5g22580
malus_domestica	MD06G1037600.v1.1
prunus_persica	Prupe.5G031400_v2.0.a1
pyrus_communis	pycom06g03120 pycom06g03130
rosa_chinensis	RchiOBHm_Chr7g0210351
rosa_laevigata	RLG00000003044
rosa_multiflora	Rmu_sc0003807.1_g000003
rosa_roxburghii	Rroxscaffold_1G00030310 Rroxscaffold_1G00030320 Rroxscaffold_1G00030790 Rroxscaffold_1G00030800 Rroxscaffold_1G00038480 Rroxscaffold_3G00248360 Rroxscaffold_5G00369280
rosa_rugosa	Rorug07G0121300
rosa_samantha	Rh2BG360900 Rh7AG254000 Rh7BG248900 Rh7CG270800 Rh7DG261500
rosa_wichuraiana	Rw7G021650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	38
AcoI	YGGCCR	1 cut(s)	19
AfaI	GTAC	3 cut(s)	133, 299, 465
AgsI	TTSAA	5 cut(s)	53, 109, 347, 393, 403
Alw26I	GTCTC	1 cut(s)	19
AoxI	GGCC	1 cut(s)	19
AspS9I	GGNCC	1 cut(s)	414
AsuHPI	GGTGA	3 cut(s)	27, 260, 350
AvaII	GGWCC	1 cut(s)	414
BbsI	GAAGAC	1 cut(s)	161
BccI	CCATC	3 cut(s)	167, 194, 477
BcoDI	GTCTC	1 cut(s)	19
BfaI	CTAG	2 cut(s)	477, 532
BfmI	CTRYAG	2 cut(s)	226, 293
Bme18I	GGWCC	1 cut(s)	414
BmgT120I	GGNCC	1 cut(s)	414
BmsI	GCATC	1 cut(s)	261
BpiI	GAAGAC	1 cut(s)	161
Bpu10I	CCTNAGC	1 cut(s)	367
BpuEI	CTTGAG	2 cut(s)	112, 495
BsaI	GGTCTC	1 cut(s)	19
BsaJI	CCNNGG	1 cut(s)	410
BsaWI	WCCGGW	1 cut(s)	191
Bse118I	RCCGGY	1 cut(s)	91
Bse3DI	GCAATG	1 cut(s)	505
BseDI	CCNNGG	1 cut(s)	410
BseGI	GGATG	2 cut(s)	488, 521
BseMI	GCAATG	1 cut(s)	505
BseRI	GAGGAG	1 cut(s)	115
BsgI	GTGCAG	1 cut(s)	100
BshFI	GGCC	1 cut(s)	21
BsiSI	CCGG	3 cut(s)	18, 92, 192
BslFI	GGGAC	2 cut(s)	369, 500
BsmAI	GTCTC	1 cut(s)	19
BsmFI	GGGAC	2 cut(s)	369, 500
BsmI	GAATGC	1 cut(s)	464
BsnI	GGCC	1 cut(s)	21
Bso31I	GGTCTC	1 cut(s)	19
Bsp143I	GATC	4 cut(s)	70, 169, 208, 220
BspACI	CCGC	1 cut(s)	38
BspANI	GGCC	1 cut(s)	21
BspMAI	CTGCAG	1 cut(s)	297
BspQI	GCTCTTC	2 cut(s)	131, 308
BspTNI	GGTCTC	1 cut(s)	19
BsrDI	GCAATG	1 cut(s)	505
BsrFI	RCCGGY	1 cut(s)	91
BssAI	RCCGGY	1 cut(s)	91
BssECI	CCNNGG	1 cut(s)	410
BssMI	GATC	4 cut(s)	70, 169, 208, 220
Bst4CI	ACNGT	1 cut(s)	146
Bst6I	CTCTTC	3 cut(s)	131, 308, 345
BstC8I	GCNNGC	3 cut(s)	93, 97, 119
BstDEI	CTNAG	1 cut(s)	367
BstDSI	CCRYGG	1 cut(s)	410
BstF5I	GGATG	2 cut(s)	488, 521
BstKTI	GATC	4 cut(s)	73, 172, 211, 223
BstMAI	GTCTC	1 cut(s)	19
BstMBI	GATC	4 cut(s)	70, 169, 208, 220
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 315
BstNSI	RCATGY	1 cut(s)	99
BstSFI	CTRYAG	2 cut(s)	226, 293
BstV2I	GAAGAC	1 cut(s)	161
BsuRI	GGCC	1 cut(s)	21
BtgI	CCRYGG	1 cut(s)	410
BtsCI	GGATG	2 cut(s)	488, 521
Cac8I	GCNNGC	3 cut(s)	93, 97, 119
Cfr10I	RCCGGY	1 cut(s)	91
Cfr13I	GGNCC	1 cut(s)	414
Csp6I	GTAC	3 cut(s)	132, 298, 464
CviAII	CATG	1 cut(s)	96
CviQI	GTAC	3 cut(s)	132, 298, 464
DdeI	CTNAG	1 cut(s)	367
DpnI	GATC	4 cut(s)	72, 171, 210, 222
DpnII	GATC	4 cut(s)	70, 169, 208, 220
EaeI	YGGCCR	1 cut(s)	19
Eam1104I	CTCTTC	3 cut(s)	131, 308, 345
EarI	CTCTTC	3 cut(s)	131, 308, 345
Eco31I	GGTCTC	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	414
FaeI	CATG	1 cut(s)	99
FaiI	YATR	4 cut(s)	97, 207, 228, 492
FalI	AAGNNNNNCTT	2 cut(s)	342, 374
FaqI	GGGAC	2 cut(s)	369, 500
FatI	CATG	1 cut(s)	95
FokI	GGATG	2 cut(s)	495, 528
FspBI	CTAG	2 cut(s)	477, 532
HaeIII	GGCC	1 cut(s)	21
HapII	CCGG	3 cut(s)	18, 92, 192
Hin1II	CATG	1 cut(s)	99
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HinfI	GANTC	2 cut(s)	288, 508
HpaI	GTTAAC	1 cut(s)	103
HpaII	CCGG	3 cut(s)	18, 92, 192
HphI	GGTGA	3 cut(s)	27, 260, 350
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	1 cut(s)	70
Hpy188III	TCNNGA	1 cut(s)	347
Hpy8I	GTNNAC	1 cut(s)	103
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4V	TGCA	3 cut(s)	117, 240, 295
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 315
HpyF3I	CTNAG	1 cut(s)	367
Hsp92II	CATG	1 cut(s)	99
KroI	GCCGGC	1 cut(s)	91
KroNI	GCCGGC	1 cut(s)	93
KspAI	GTTAAC	1 cut(s)	103
Kzo9I	GATC	4 cut(s)	70, 169, 208, 220
LguI	GCTCTTC	2 cut(s)	131, 308
LmnI	GCTCC	4 cut(s)	64, 194, 279, 430
LpnPI	CCDG	4 cut(s)	31, 105, 205, 305
LweI	GCATC	1 cut(s)	261
MaeI	CTAG	2 cut(s)	477, 532
MaeIII	GTNAC	3 cut(s)	33, 338, 518
MalI	GATC	4 cut(s)	72, 171, 210, 222
MboI	GATC	4 cut(s)	70, 169, 208, 220
MboII	GAAGA	4 cut(s)	148, 166, 325, 362
MfeI	CAATTG	1 cut(s)	235
MluCI	AATT	2 cut(s)	64, 235
MlyI	GAGTC	1 cut(s)	502
MnlI	CCTC	8 cut(s)	122, 136, 160, 176, 187, 346, 386, 441
MroNI	GCCGGC	1 cut(s)	91
MseI	TTAA	1 cut(s)	102
MspI	CCGG	3 cut(s)	18, 92, 192
MunI	CAATTG	1 cut(s)	235
Mva1269I	GAATGC	1 cut(s)	464
MwoI	GCNNNNNNNGC	2 cut(s)	46, 315
NaeI	GCCGGC	1 cut(s)	93
NdeII	GATC	4 cut(s)	70, 169, 208, 220
NgoMIV	GCCGGC	1 cut(s)	91
NlaIII	CATG	1 cut(s)	99
NmuCI	GTSAC	2 cut(s)	33, 338
NspI	RCATGY	1 cut(s)	99
PaeI	GCATGC	1 cut(s)	99
PciSI	GCTCTTC	2 cut(s)	131, 308
PcsI	WCGNNNNNNNCGW	1 cut(s)	306
PctI	GAATGC	1 cut(s)	464
PdiI	GCCGGC	1 cut(s)	93
PfeI	GAWTC	1 cut(s)	288
PleI	GAGTC	1 cut(s)	502
PpsI	GAGTC	1 cut(s)	502
PspPI	GGNCC	1 cut(s)	414
PstI	CTGCAG	1 cut(s)	297
RsaI	GTAC	3 cut(s)	133, 299, 465
RsaNI	GTAC	3 cut(s)	132, 298, 464
SapI	GCTCTTC	2 cut(s)	131, 308
SaqAI	TTAA	1 cut(s)	102
Sau3AI	GATC	4 cut(s)	70, 169, 208, 220
Sau96I	GGNCC	1 cut(s)	414
SchI	GAGTC	1 cut(s)	502
SfaNI	GCATC	1 cut(s)	261
SfcI	CTRYAG	2 cut(s)	226, 293
SinI	GGWCC	1 cut(s)	414
SmlI	CTYRAG	2 cut(s)	127, 510
SmoI	CTYRAG	2 cut(s)	127, 510
SphI	GCATGC	1 cut(s)	99
Sse9I	AATT	2 cut(s)	64, 235
SsiI	CCGC	1 cut(s)	38
SspMI	CTAG	2 cut(s)	477, 532
TaaI	ACNGT	1 cut(s)	146
TaqI	TCGA	5 cut(s)	152, 162, 168, 269, 378
TasI	AATT	2 cut(s)	64, 235
TfiI	GAWTC	1 cut(s)	288
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TseFI	GTSAC	2 cut(s)	33, 338
Tsp45I	GTSAC	2 cut(s)	33, 338
TspDTI	ATGAA	2 cut(s)	174, 516
TspGWI	ACGGA	1 cut(s)	427
VpaK11BI	GGWCC	1 cut(s)	414
XceI	RCATGY	1 cut(s)	99
XspI	CTAG	2 cut(s)	477, 532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.