Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0008811

Physical Location & Seq

Genomic Coordinates Reverse (-)

41338668 .. 41338922

Gene Structure 255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00030800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGAATGAACAAGTGGGTTCTTTGATTGATGAGGTGGGGTCTCGGAGTATTATTGGTGAGGGAGGAAGTAGGCAGAGCGCGAAACAAGAAGAAGAGAGAGTTGGGGTTGGTGTAGCGAATGTTGCTCGTGTGTCCGAGCATGGGAAAGAGGAGGATGATGCTGTGACAAGATTGGAAGAGCTGCAGCGCGGTGTCGAAGAGCCGGAGTTGTCGAAGAGCAGCCGAGGATCAATGATTTCCGTGCTGCTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

84

Amino Acids

9.02

Weight (kDa)

4.65

Isoelectric Point (pI)

60.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32340
fragaria_vesca	FvH4_5g22580
malus_domestica	MD06G1037600.v1.1
prunus_persica	Prupe.5G031400_v2.0.a1
pyrus_communis	pycom06g03120 pycom06g03130
rosa_chinensis	RchiOBHm_Chr7g0210351
rosa_laevigata	RLG00000003044
rosa_multiflora	Rmu_sc0003807.1_g000003
rosa_roxburghii	Rroxscaffold_1G00030310 Rroxscaffold_1G00030320 Rroxscaffold_1G00030790 Rroxscaffold_1G00030800 Rroxscaffold_1G00038480 Rroxscaffold_3G00248360 Rroxscaffold_5G00369280
rosa_rugosa	Rorug07G0121300
rosa_samantha	Rh2BG360900 Rh7AG254000 Rh7BG248900 Rh7CG270800 Rh7DG261500
rosa_wichuraiana	Rw7G021650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	80, 189
AciI	CCGC	1 cut(s)	189
AclWI	GGATC	1 cut(s)	235
AfiI	CCNNNNNNNGG	1 cut(s)	141
AjuI	GAANNNNNNNTTGG	2 cut(s)	84, 116
AluBI	AGCT	1 cut(s)	181
AluI	AGCT	1 cut(s)	181
Alw26I	GTCTC	1 cut(s)	45
AlwI	GGATC	1 cut(s)	235
ApeKI	GCWGC	4 cut(s)	181, 184, 219, 244
AspLEI	GCGC	2 cut(s)	80, 189
AsuHPI	GGTGA	1 cut(s)	68
BauI	CACGAG	1 cut(s)	126
BbvI	GCAGC	4 cut(s)	168, 196, 231, 231
BcoDI	GTCTC	1 cut(s)	45
BfmI	CTRYAG	1 cut(s)	182
BisI	GCNGC	4 cut(s)	182, 185, 220, 245
BlsI	GCNGC	4 cut(s)	183, 186, 221, 246
BmsI	GCATC	1 cut(s)	148
BsaI	GGTCTC	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	1 cut(s)	141
BseDI	CCNNGG	1 cut(s)	223
BseGI	GGATG	1 cut(s)	160
BseLI	CCNNNNNNNGG	1 cut(s)	141
BseRI	GAGGAG	1 cut(s)	164
BseXI	GCAGC	4 cut(s)	168, 196, 231, 231
Bsh1236I	CGCG	2 cut(s)	80, 189
BsiSI	CCGG	1 cut(s)	203
BslI	CCNNNNNNNGG	1 cut(s)	141
BsmAI	GTCTC	1 cut(s)	45
Bso31I	GGTCTC	1 cut(s)	45
Bsp143I	GATC	1 cut(s)	227
BspACI	CCGC	1 cut(s)	189
BspFNI	CGCG	2 cut(s)	80, 189
BspMAI	CTGCAG	1 cut(s)	186
BspPI	GGATC	1 cut(s)	235
BspQI	GCTCTTC	3 cut(s)	171, 192, 209
BspTNI	GGTCTC	1 cut(s)	45
BssECI	CCNNGG	1 cut(s)	223
BssMI	GATC	1 cut(s)	227
BssSI	CACGAG	1 cut(s)	126
Bst2BI	CACGAG	1 cut(s)	126
Bst6I	CTCTTC	4 cut(s)	87, 171, 192, 209
BstF5I	GGATG	1 cut(s)	160
BstFNI	CGCG	2 cut(s)	80, 189
BstHHI	GCGC	2 cut(s)	80, 189
BstKTI	GATC	1 cut(s)	230
BstMAI	GTCTC	1 cut(s)	45
BstMBI	GATC	1 cut(s)	227
BstMWI	GCNNNNNNNGC	1 cut(s)	122
BstSFI	CTRYAG	1 cut(s)	182
BstUI	CGCG	2 cut(s)	80, 189
BstV1I	GCAGC	4 cut(s)	168, 196, 231, 231
BtsCI	GGATG	1 cut(s)	160
CfoI	GCGC	2 cut(s)	80, 189
CviAII	CATG	1 cut(s)	140
CviJI	RGCY	3 cut(s)	181, 202, 222
CviKI_1	RGCY	3 cut(s)	181, 202, 222
DpnI	GATC	1 cut(s)	229
DpnII	GATC	1 cut(s)	227
Eam1104I	CTCTTC	4 cut(s)	87, 171, 192, 209
EarI	CTCTTC	4 cut(s)	87, 171, 192, 209
Eco31I	GGTCTC	1 cut(s)	45
FaeI	CATG	1 cut(s)	143
FaiI	YATR	1 cut(s)	141
FatI	CATG	1 cut(s)	139
Fnu4HI	GCNGC	4 cut(s)	182, 185, 220, 245
FokI	GGATG	1 cut(s)	167
Fsp4HI	GCNGC	4 cut(s)	182, 185, 220, 245
GlaI	GCGC	2 cut(s)	79, 188
GluI	GCNGC	4 cut(s)	182, 185, 220, 245
HapII	CCGG	1 cut(s)	203
HhaI	GCGC	2 cut(s)	80, 189
Hin1II	CATG	1 cut(s)	143
Hin6I	GCGC	2 cut(s)	78, 187
HinP1I	GCGC	2 cut(s)	78, 187
HpaII	CCGG	1 cut(s)	203
HphI	GGTGA	1 cut(s)	68
Hpy188I	TCNGA	2 cut(s)	45, 136
HpyCH4V	TGCA	1 cut(s)	184
HpyF10VI	GCNNNNNNNGC	1 cut(s)	122
Hsp92II	CATG	1 cut(s)	143
HspAI	GCGC	2 cut(s)	78, 187
Kzo9I	GATC	1 cut(s)	227
LguI	GCTCTTC	3 cut(s)	171, 192, 209
LpnPI	CCDG	1 cut(s)	216
Lsp1109I	GCAGC	4 cut(s)	168, 196, 231, 231
LweI	GCATC	1 cut(s)	148
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	1 cut(s)	229
MboI	GATC	1 cut(s)	227
MboII	GAAGA	5 cut(s)	101, 104, 188, 209, 226
MnlI	CCTC	6 cut(s)	25, 52, 56, 142, 145, 218
MseI	TTAA	1 cut(s)	253
MspI	CCGG	1 cut(s)	203
MvnI	CGCG	2 cut(s)	80, 189
MwoI	GCNNNNNNNGC	1 cut(s)	122
NdeII	GATC	1 cut(s)	227
NlaIII	CATG	1 cut(s)	143
NmeAIII	GCCGAG	1 cut(s)	248
NmuCI	GTSAC	1 cut(s)	163
PciSI	GCTCTTC	3 cut(s)	171, 192, 209
PkrI	GCNGC	4 cut(s)	183, 186, 221, 246
PstI	CTGCAG	1 cut(s)	186
SapI	GCTCTTC	3 cut(s)	171, 192, 209
SaqAI	TTAA	1 cut(s)	253
SatI	GCNGC	4 cut(s)	182, 185, 220, 245
Sau3AI	GATC	1 cut(s)	227
SetI	ASST	2 cut(s)	36, 183
SfaNI	GCATC	1 cut(s)	148
SfcI	CTRYAG	1 cut(s)	182
SsiI	CCGC	1 cut(s)	189
TaqI	TCGA	2 cut(s)	195, 212
Tru1I	TTAA	1 cut(s)	253
Tru9I	TTAA	1 cut(s)	253
TseFI	GTSAC	1 cut(s)	163
TseI	GCWGC	4 cut(s)	181, 184, 219, 244
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	2 cut(s)	17, 21
TspGWI	ACGGA	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.