Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0008811

Physical Location & Seq

Genomic Coordinates Reverse (-)

39815619 .. 39828180

Gene Structure 12562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00030320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAGCTTCACCGAAGTATTTCGGTTGTTAATGCTTAGTGTTATGTCATTTGTATCTGTAGGCCTCTTATGTGGTATGGATAAAGAGTGGGTATTTCTTGATCACAAAACCGATAAGTATACGCAAGAGCTTTCCACCGTCTCGTTCCTTCCCTTTCCTCGCTTCTCAACCGGTTGTTTCGGACTTCCGAGTTCCACTCATCCACTTCGTCGATCAACTTGTAGGACACTTCATTCAGCTTATCCGGCCCGTTTCGACGCCGGCATCCTTCACTTGCCTCTCATCGCCTCTTCAAGCACAGCTCGAACAGCTTCAAGGTTTCCGATTCCTTTCCTTTTCCTTCTCCACTTCGGTCGGTCCCTCCCCGGCTGCACTTGTCCCTCTGCATTATTAACCAAGCGGACGGATCTCCGGTGGGAGATACCGAAGAGGACGCGGAGAAAGAGGAGGAGGACGGGAACAACACCACCCTTCACTCCAAATCGACGATGCATTAAAACTCAACAATCTTCTGTCACCGTTGACTTGTCGCCTCGGACTCATGAACCCACCACCTCCACGCCCGGAAAGCACGAAATCCGAGGTCGGCATCCGGTATTCAAACCTCGGTTTGTCAAGAAATACGAGTCGGGTTTTCTTCGAATGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

216

Amino Acids

24.72

Weight (kDa)

10.88

Isoelectric Point (pI)

64.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32340
fragaria_vesca	FvH4_5g22580
malus_domestica	MD06G1037600.v1.1
prunus_persica	Prupe.5G031400_v2.0.a1
pyrus_communis	pycom06g03120 pycom06g03130
rosa_chinensis	RchiOBHm_Chr7g0210351
rosa_laevigata	RLG00000003044
rosa_multiflora	Rmu_sc0003807.1_g000003
rosa_roxburghii	Rroxscaffold_1G00030310 Rroxscaffold_1G00030320 Rroxscaffold_1G00030790 Rroxscaffold_1G00030800 Rroxscaffold_1G00038480 Rroxscaffold_3G00248360 Rroxscaffold_5G00369280
rosa_rugosa	Rorug07G0121300
rosa_samantha	Rh2BG360900 Rh7AG254000 Rh7BG248900 Rh7CG270800 Rh7DG261500
rosa_wichuraiana	Rw7G021650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	119
AccII	CGCG	1 cut(s)	436
AciI	CCGC	2 cut(s)	400, 436
AclWI	GGATC	1 cut(s)	414
AcyI	GRCGYC	1 cut(s)	258
AgeI	ACCGGT	1 cut(s)	170
AgsI	TTSAA	3 cut(s)	294, 315, 601
AluBI	AGCT	5 cut(s)	6, 130, 239, 302, 311
AluI	AGCT	5 cut(s)	6, 130, 239, 302, 311
Alw26I	GTCTC	1 cut(s)	145
AlwI	GGATC	1 cut(s)	414
AoxI	GGCC	2 cut(s)	61, 246
ApeKI	GCWGC	1 cut(s)	369
AsiGI	ACCGGT	1 cut(s)	170
Asp700I	GAANNNNTTC	2 cut(s)	18, 310
AspS9I	GGNCC	2 cut(s)	247, 357
AsuC2I	CCSGG	2 cut(s)	366, 564
AsuHPI	GGTGA	1 cut(s)	508
AsuII	TTCGAA	1 cut(s)	640
AvaII	GGWCC	1 cut(s)	357
BbvI	GCAGC	1 cut(s)	356
BclI	TGATCA	1 cut(s)	100
BcnI	CCSGG	2 cut(s)	366, 564
BcoDI	GTCTC	1 cut(s)	145
BfmI	CTRYAG	1 cut(s)	57
BisI	GCNGC	1 cut(s)	370
BlsI	GCNGC	1 cut(s)	371
Bme1390I	CCNGG	2 cut(s)	366, 564
Bme18I	GGWCC	1 cut(s)	357
BmgT120I	GGNCC	2 cut(s)	247, 357
BmiI	GGNNCC	1 cut(s)	359
BmrFI	CCNGG	2 cut(s)	366, 564
BmsI	GCATC	3 cut(s)	273, 479, 598
BplI	GAGNNNNNCTC	2 cut(s)	181, 213
Bpu14I	TTCGAA	1 cut(s)	640
BpuMI	CCSGG	2 cut(s)	366, 564
BsaHI	GRCGYC	1 cut(s)	258
BsaJI	CCNNGG	4 cut(s)	364, 533, 580, 605
BsaWI	WCCGGW	3 cut(s)	170, 411, 592
Bse118I	RCCGGY	2 cut(s)	170, 260
BseDI	CCNNGG	4 cut(s)	364, 533, 580, 605
BseGI	GGATG	3 cut(s)	199, 264, 589
BseRI	GAGGAG	2 cut(s)	460, 463
BseXI	GCAGC	1 cut(s)	356
BsgI	GTGCAG	1 cut(s)	355
Bsh1236I	CGCG	1 cut(s)	436
Bsh1285I	CGRYCG	1 cut(s)	355
BshFI	GGCC	2 cut(s)	63, 248
BshTI	ACCGGT	1 cut(s)	170
BsiEI	CGRYCG	1 cut(s)	355
BsiSI	CCGG	7 cut(s)	171, 245, 261, 366, 412, 564, 593
BslFI	GGGAC	2 cut(s)	343, 363
BsmAI	GTCTC	1 cut(s)	145
BsmBI	CGTCTC	1 cut(s)	145
BsmFI	GGGAC	2 cut(s)	343, 363
BsnI	GGCC	2 cut(s)	63, 248
Bsp119I	TTCGAA	1 cut(s)	640
Bsp143I	GATC	3 cut(s)	100, 212, 406
BspACI	CCGC	2 cut(s)	400, 436
BspANI	GGCC	2 cut(s)	63, 248
BspFNI	CGCG	1 cut(s)	436
BspHI	TCATGA	1 cut(s)	541
BspLI	GGNNCC	1 cut(s)	359
BspPI	GGATC	1 cut(s)	414
BspT104I	TTCGAA	1 cut(s)	640
BsrFI	RCCGGY	2 cut(s)	170, 260
BssAI	RCCGGY	2 cut(s)	170, 260
BssECI	CCNNGG	4 cut(s)	364, 533, 580, 605
BssMI	GATC	3 cut(s)	100, 212, 406
BssNAI	GTATAC	1 cut(s)	120
BssNI	GRCGYC	1 cut(s)	258
Bst1107I	GTATAC	1 cut(s)	120
Bst4CI	ACNGT	2 cut(s)	139, 520
Bst6I	CTCTTC	2 cut(s)	295, 422
BstACI	GRCGYC	1 cut(s)	258
BstBI	TTCGAA	1 cut(s)	640
BstC8I	GCNNGC	1 cut(s)	262
BstDEI	CTNAG	1 cut(s)	35
BstF5I	GGATG	3 cut(s)	199, 264, 589
BstFNI	CGCG	1 cut(s)	436
BstKTI	GATC	3 cut(s)	103, 215, 409
BstMAI	GTCTC	1 cut(s)	145
BstMBI	GATC	3 cut(s)	100, 212, 406
BstMCI	CGRYCG	1 cut(s)	355
BstMWI	GCNNNNNNNGC	3 cut(s)	245, 308, 568
BstSCI	CCNGG	2 cut(s)	364, 562
BstSFI	CTRYAG	1 cut(s)	57
BstUI	CGCG	1 cut(s)	436
BstV1I	GCAGC	1 cut(s)	356
BstX2I	RGATCY	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	406
BstZ17I	GTATAC	1 cut(s)	120
BsuRI	GGCC	2 cut(s)	63, 248
BtgZI	GCGATG	1 cut(s)	268
BtsCI	GGATG	3 cut(s)	199, 264, 589
Cac8I	GCNNGC	1 cut(s)	262
CciI	TCATGA	1 cut(s)	541
Cfr10I	RCCGGY	2 cut(s)	170, 260
Cfr13I	GGNCC	2 cut(s)	247, 357
CseI	GACGC	2 cut(s)	266, 442
CspAI	ACCGGT	1 cut(s)	170
CviAII	CATG	1 cut(s)	542
CviJI	RGCY	8 cut(s)	6, 63, 130, 239, 248, 302, 311, 369
CviKI_1	RGCY	8 cut(s)	6, 63, 130, 239, 248, 302, 311, 369
DdeI	CTNAG	1 cut(s)	35
DpnI	GATC	3 cut(s)	102, 214, 408
DpnII	GATC	3 cut(s)	100, 212, 406
Eam1104I	CTCTTC	2 cut(s)	295, 422
EarI	CTCTTC	2 cut(s)	295, 422
Eco147I	AGGCCT	1 cut(s)	63
Eco47I	GGWCC	1 cut(s)	357
EcoT22I	ATGCAT	1 cut(s)	494
Esp3I	CGTCTC	1 cut(s)	145
FaeI	CATG	1 cut(s)	545
FaiI	YATR	5 cut(s)	44, 70, 77, 120, 543
FaqI	GGGAC	2 cut(s)	343, 363
FatI	CATG	1 cut(s)	541
FbaI	TGATCA	1 cut(s)	100
FblI	GTMKAC	1 cut(s)	119
Fnu4HI	GCNGC	1 cut(s)	370
FokI	GGATG	3 cut(s)	186, 251, 576
Fsp4HI	GCNGC	1 cut(s)	370
GluI	GCNGC	1 cut(s)	370
HaeIII	GGCC	2 cut(s)	63, 248
HapII	CCGG	7 cut(s)	171, 245, 261, 366, 412, 564, 593
HgaI	GACGC	2 cut(s)	266, 442
Hin1I	GRCGYC	1 cut(s)	258
Hin1II	CATG	1 cut(s)	545
HincII	GTYRAC	1 cut(s)	523
HindII	GTYRAC	1 cut(s)	523
HinfI	GANTC	3 cut(s)	325, 538, 626
HpaII	CCGG	7 cut(s)	171, 245, 261, 366, 412, 564, 593
HphI	GGTGA	1 cut(s)	508
Hpy166II	GTNNAC	2 cut(s)	120, 523
Hpy188I	TCNGA	5 cut(s)	182, 189, 324, 537, 581
Hpy188III	TCNNGA	3 cut(s)	98, 542, 616
Hpy8I	GTNNAC	2 cut(s)	120, 523
Hpy99I	CGWCG	3 cut(s)	213, 260, 489
HpyAV	CCTTC	4 cut(s)	158, 278, 350, 481
HpyCH4III	ACNGT	2 cut(s)	139, 520
HpyCH4V	TGCA	3 cut(s)	372, 386, 492
HpyF10VI	GCNNNNNNNGC	3 cut(s)	245, 308, 568
HpyF3I	CTNAG	1 cut(s)	35
Hsp92I	GRCGYC	1 cut(s)	258
Hsp92II	CATG	1 cut(s)	545
KroI	GCCGGC	1 cut(s)	260
KroNI	GCCGGC	1 cut(s)	262
Ksp22I	TGATCA	1 cut(s)	100
Kzo9I	GATC	3 cut(s)	100, 212, 406
LpnPI	CCDG	7 cut(s)	184, 258, 274, 379, 425, 577, 606
Lsp1109I	GCAGC	1 cut(s)	356
LweI	GCATC	3 cut(s)	273, 479, 598
MaeIII	GTNAC	1 cut(s)	514
MalI	GATC	3 cut(s)	102, 214, 408
MboI	GATC	3 cut(s)	100, 212, 406
MboII	GAAGA	4 cut(s)	282, 439, 501, 629
MflI	RGATCY	1 cut(s)	406
MlyI	GAGTC	2 cut(s)	532, 635
Mph1103I	ATGCAT	1 cut(s)	494
MroNI	GCCGGC	1 cut(s)	260
MroXI	GAANNNNTTC	2 cut(s)	18, 310
MseI	TTAA	3 cut(s)	29, 392, 495
MspI	CCGG	7 cut(s)	171, 245, 261, 366, 412, 564, 593
MspR9I	CCNGG	2 cut(s)	366, 564
MvnI	CGCG	1 cut(s)	436
MwoI	GCNNNNNNNGC	3 cut(s)	245, 308, 568
NaeI	GCCGGC	1 cut(s)	262
NciI	CCSGG	2 cut(s)	366, 564
NdeII	GATC	3 cut(s)	100, 212, 406
NgoMIV	GCCGGC	1 cut(s)	260
NlaIII	CATG	1 cut(s)	545
NlaIV	GGNNCC	1 cut(s)	359
NmuCI	GTSAC	1 cut(s)	514
NsiI	ATGCAT	1 cut(s)	494
NspV	TTCGAA	1 cut(s)	640
PagI	TCATGA	1 cut(s)	541
PceI	AGGCCT	1 cut(s)	63
PdiI	GCCGGC	1 cut(s)	262
PdmI	GAANNNNTTC	2 cut(s)	18, 310
PfeI	GAWTC	1 cut(s)	325
PinAI	ACCGGT	1 cut(s)	170
PkrI	GCNGC	1 cut(s)	371
PleI	GAGTC	2 cut(s)	532, 634
PpsI	GAGTC	2 cut(s)	532, 634
PspN4I	GGNNCC	1 cut(s)	359
PspPI	GGNCC	2 cut(s)	247, 357
PsuI	RGATCY	1 cut(s)	406
SaqAI	TTAA	3 cut(s)	29, 392, 495
SatI	GCNGC	1 cut(s)	370
Sau3AI	GATC	3 cut(s)	100, 212, 406
Sau96I	GGNCC	2 cut(s)	247, 357
SchI	GAGTC	2 cut(s)	532, 635
ScrFI	CCNGG	2 cut(s)	366, 564
SetI	ASST	9 cut(s)	8, 132, 241, 304, 313, 320, 557, 586, 607
SfaNI	GCATC	3 cut(s)	273, 479, 598
SfcI	CTRYAG	1 cut(s)	57
SfuI	TTCGAA	1 cut(s)	640
SinI	GGWCC	1 cut(s)	357
SseBI	AGGCCT	1 cut(s)	63
SsiI	CCGC	2 cut(s)	400, 436
StuI	AGGCCT	1 cut(s)	63
StyD4I	CCNGG	2 cut(s)	364, 562
TaaI	ACNGT	2 cut(s)	139, 520
TaqI	TCGA	5 cut(s)	211, 255, 304, 484, 640
TaqII	GACCGA	2 cut(s)	341, 345
TfiI	GAWTC	1 cut(s)	325
Tru1I	TTAA	3 cut(s)	29, 392, 495
Tru9I	TTAA	3 cut(s)	29, 392, 495
TseFI	GTSAC	1 cut(s)	514
TseI	GCWGC	1 cut(s)	369
Tsp45I	GTSAC	1 cut(s)	514
TspDTI	ATGAA	2 cut(s)	221, 558
TspGWI	ACGGA	1 cut(s)	419
VpaK11BI	GGWCC	1 cut(s)	357
XmiI	GTMKAC	1 cut(s)	119
XmnI	GAANNNNTTC	2 cut(s)	18, 310
Zsp2I	ATGCAT	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.