Rh2BG360900

E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0008811
Physical Location & Seq
Reverse (-)
49956422 .. 49958440
2019 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG360900.1

Sequence Viewer

Length: 366 bp
ATGCTTGTAATCAAAGCTCACAGTGAGTACACCGCACCTGTTGGCAGTCATATCAACTTTAGTGTACTAAAACAAGAAGAAGAGAGAGTTGTGGCTAGTGTAGAGAATGCTGCTGAGGTGTCTGAGCGTGGGAAAGAGGAGGATGATGCTGTGACAAGATTGGAAGAGCTGCAGCGCTGTGTCGAAGAGTCGAAGTTGTCAGAAGAGCAGCTGAGGATCAATGATCAGGTTCAGGAGGATGAGTTGCTTGCTATGGAGTCCATTTTTGGAGACAGCATTACCATCCTTAAAAGCCAACGAGGCCTCCGATCTTTTCAGATTCATATACACATTGAAGCTCCTGGTTGCTGTGTTCTTCGTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006464 GO:0006807 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0023051 GO:0023052 GO:0030162 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0033143 GO:0035257 GO:0035258 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051427 GO:0051716 GO:0060255 GO:0060765 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1990234 GO:2000058 GO:2000060 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IBR RWD zf-C3HC4

Protein Analysis

121

Amino Acids

13.69

Weight (kDa)

4.75

Isoelectric Point (pI)

71.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 33
AclWI GGATC 1 cut(s) 224
AfaI GTAC 2 cut(s) 29, 66
AfeI AGCGCT 1 cut(s) 176
AgsI TTSAA 1 cut(s) 335
AjnI CCWGG 1 cut(s) 340
AluBI AGCT 4 cut(s) 17, 169, 211, 338
AluI AGCT 4 cut(s) 17, 169, 211, 338
Alw26I GTCTC 1 cut(s) 264
AlwI GGATC 1 cut(s) 224
Aor51HI AGCGCT 1 cut(s) 176
AoxI GGCC 1 cut(s) 301
ApeKI GCWGC 4 cut(s) 110, 169, 172, 208
AspLEI GCGC 1 cut(s) 177
BbvCI CCTCAGC 2 cut(s) 114, 212
BbvI GCAGC 4 cut(s) 97, 156, 184, 220
BccI CCATC 1 cut(s) 290
BciT130I CCWGG 1 cut(s) 342
BclI TGATCA 1 cut(s) 223
BcoDI GTCTC 1 cut(s) 264
BfaI CTAG 1 cut(s) 96
BfmI CTRYAG 1 cut(s) 170
BfoI RGCGCY 1 cut(s) 178
BglI GCCNNNNNGGC 1 cut(s) 300
BisI GCNGC 4 cut(s) 111, 170, 173, 209
BlsI GCNGC 4 cut(s) 112, 171, 174, 210
Bme1390I CCNGG 1 cut(s) 342
BmrFI CCNGG 1 cut(s) 342
BmsI GCATC 1 cut(s) 136
Bpu10I CCTNAGC 2 cut(s) 114, 212
BsaXI ACNNNNNCTCC 4 cut(s) 227, 257, 288, 318
BseBI CCWGG 1 cut(s) 342
BseGI GGATG 3 cut(s) 148, 244, 282
BseMII CTCAG 3 cut(s) 105, 114, 203
BseRI GAGGAG 1 cut(s) 152
BseXI GCAGC 4 cut(s) 97, 156, 184, 220
BshFI GGCC 1 cut(s) 303
BsmAI GTCTC 1 cut(s) 264
BsmI GAATGC 1 cut(s) 112
BsnI GGCC 1 cut(s) 303
Bsp143I GATC 3 cut(s) 216, 223, 308
BspACI CCGC 1 cut(s) 33
BspANI GGCC 1 cut(s) 303
BspCNI CTCAG 3 cut(s) 106, 115, 204
BspMAI CTGCAG 1 cut(s) 174
BspPI GGATC 1 cut(s) 224
BspQI GCTCTTC 2 cut(s) 159, 198
BssMI GATC 3 cut(s) 216, 223, 308
Bst2UI CCWGG 1 cut(s) 342
Bst4CI ACNGT 1 cut(s) 23
Bst6I CTCTTC 4 cut(s) 75, 159, 180, 198
BstC8I GCNNGC 1 cut(s) 249
BstDEI CTNAG 3 cut(s) 114, 123, 212
BstF5I GGATG 3 cut(s) 148, 244, 282
BstH2I RGCGCY 1 cut(s) 178
BstHHI GCGC 1 cut(s) 177
BstKTI GATC 3 cut(s) 219, 226, 311
BstMAI GTCTC 1 cut(s) 264
BstMBI GATC 3 cut(s) 216, 223, 308
BstMWI GCNNNNNNNGC 1 cut(s) 300
BstNI CCWGG 1 cut(s) 342
BstSCI CCNGG 1 cut(s) 340
BstSFI CTRYAG 1 cut(s) 170
BstV1I GCAGC 4 cut(s) 97, 156, 184, 220
BsuRI GGCC 1 cut(s) 303
BtsCI GGATG 3 cut(s) 148, 244, 282
BtsIMutI CAGTG 1 cut(s) 28
Cac8I GCNNGC 1 cut(s) 249
CfoI GCGC 1 cut(s) 177
Csp6I GTAC 2 cut(s) 28, 65
CviJI RGCY 7 cut(s) 17, 95, 169, 211, 294, 303, 338
CviKI_1 RGCY 7 cut(s) 17, 95, 169, 211, 294, 303, 338
CviQI GTAC 2 cut(s) 28, 65
DdeI CTNAG 3 cut(s) 114, 123, 212
DpnI GATC 3 cut(s) 218, 225, 310
DpnII GATC 3 cut(s) 216, 223, 308
Eam1104I CTCTTC 4 cut(s) 75, 159, 180, 198
EarI CTCTTC 4 cut(s) 75, 159, 180, 198
Eco147I AGGCCT 1 cut(s) 303
Eco47III AGCGCT 1 cut(s) 176
EcoRII CCWGG 1 cut(s) 340
FaiI YATR 4 cut(s) 51, 254, 324, 326
FbaI TGATCA 1 cut(s) 223
Fnu4HI GCNGC 4 cut(s) 111, 170, 173, 209
FokI GGATG 3 cut(s) 155, 251, 269
Fsp4HI GCNGC 4 cut(s) 111, 170, 173, 209
FspBI CTAG 1 cut(s) 96
GlaI GCGC 1 cut(s) 176
GluI GCNGC 4 cut(s) 111, 170, 173, 209
HaeII RGCGCY 1 cut(s) 178
HaeIII GGCC 1 cut(s) 303
HhaI GCGC 1 cut(s) 177
Hin6I GCGC 1 cut(s) 175
HinP1I GCGC 1 cut(s) 175
HinfI GANTC 3 cut(s) 188, 257, 319
Hpy166II GTNNAC 2 cut(s) 30, 65
Hpy188I TCNGA 4 cut(s) 124, 202, 308, 318
Hpy188III TCNNGA 1 cut(s) 233
Hpy8I GTNNAC 2 cut(s) 30, 65
HpyCH4III ACNGT 1 cut(s) 23
HpyCH4V TGCA 1 cut(s) 172
HpyF10VI GCNNNNNNNGC 1 cut(s) 300
HpyF3I CTNAG 3 cut(s) 114, 123, 212
HspAI GCGC 1 cut(s) 175
Ksp22I TGATCA 1 cut(s) 223
Kzo9I GATC 3 cut(s) 216, 223, 308
LguI GCTCTTC 2 cut(s) 159, 198
LmnI GCTCC 1 cut(s) 343
LpnPI CCDG 5 cut(s) 51, 212, 218, 327, 354
Lsp1109I GCAGC 4 cut(s) 97, 156, 184, 220
LweI GCATC 1 cut(s) 136
MaeI CTAG 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 151
MalI GATC 3 cut(s) 218, 225, 310
MboI GATC 3 cut(s) 216, 223, 308
MboII GAAGA 6 cut(s) 89, 92, 176, 197, 215, 347
MlyI GAGTC 2 cut(s) 197, 266
MnlI CCTC 7 cut(s) 109, 130, 133, 207, 229, 293, 314
MseI TTAA 1 cut(s) 288
MspA1I CMGCKG 1 cut(s) 211
MspR9I CCNGG 1 cut(s) 342
Mva1269I GAATGC 1 cut(s) 112
MvaI CCWGG 1 cut(s) 342
MwoI GCNNNNNNNGC 1 cut(s) 300
NdeII GATC 3 cut(s) 216, 223, 308
NmuCI GTSAC 1 cut(s) 151
PceI AGGCCT 1 cut(s) 303
PciSI GCTCTTC 2 cut(s) 159, 198
PcsI WCGNNNNNNNCGW 1 cut(s) 304
PctI GAATGC 1 cut(s) 112
PfeI GAWTC 1 cut(s) 319
PkrI GCNGC 4 cut(s) 112, 171, 174, 210
PleI GAGTC 2 cut(s) 196, 265
PpsI GAGTC 2 cut(s) 196, 265
Psp6I CCWGG 1 cut(s) 340
PspGI CCWGG 1 cut(s) 340
PstI CTGCAG 1 cut(s) 174
PvuII CAGCTG 1 cut(s) 211
RsaI GTAC 2 cut(s) 29, 66
RsaNI GTAC 2 cut(s) 28, 65
SapI GCTCTTC 2 cut(s) 159, 198
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 4 cut(s) 111, 170, 173, 209
Sau3AI GATC 3 cut(s) 216, 223, 308
SchI GAGTC 2 cut(s) 197, 266
ScrFI CCNGG 1 cut(s) 342
SetI ASST 7 cut(s) 19, 40, 120, 171, 213, 231, 340
SfaNI GCATC 1 cut(s) 136
SfcI CTRYAG 1 cut(s) 170
SseBI AGGCCT 1 cut(s) 303
SsiI CCGC 1 cut(s) 33
SspMI CTAG 1 cut(s) 96
StuI AGGCCT 1 cut(s) 303
StyD4I CCNGG 1 cut(s) 340
TaaI ACNGT 1 cut(s) 23
TaqI TCGA 2 cut(s) 183, 191
TatI WGTACW 2 cut(s) 27, 64
TfiI GAWTC 1 cut(s) 319
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TscAI CASTG 1 cut(s) 28
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 4 cut(s) 110, 169, 172, 208
Tsp45I GTSAC 1 cut(s) 151
TspDTI ATGAA 1 cut(s) 311
TspRI CASTG 1 cut(s) 28
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.