Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001361

Physical Location & Seq

Genomic Coordinates Forward (+)

9480145 .. 9484533

Gene Structure 4389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0121300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1992 bp

ATGAGGTCCTTACCTCTCCCCCTCCTCCTCCTCCTCTTCCACGTCCTCTCTCCTACTCTCGCCCTCGACTTCCTATTCAACTCCTTCTCCAACGTCTCCAACGCCACCGACTTCACTCTCATCAACGACGCCAGACTCGACGCCTCCACCGTCCGCCTCACAAACGACTCCGTTCAGTACTCACTCGGCCGCCTCTTCCACACCACCAAGCTCACCATGAGACCTAATTCCACCTCCGCTTCCCTCGCTTCCTTTTCAACCTCCTTCGTCTTCTCCGATCTCCCCGAAATCGCTTCCAGCCCAGGCTTCGGCCTCTGCTTCGTCCTCTCCAACTCCACCTCTCCCCCCAACGCCCTCGCCAGCCAGTACTTCGGTCTCTTCTCAAACGCAACCCAGGTCGTAGCTCCCTTACTCGCCGTCGAATTCGACACGGGCCGAAACACCGAGTTCAACGATCCCGACGGAAACCACATCGGAATCGACCTCAACAGGGTCATATCGGAGGTCACTAGGCCCGCCGGCTACTACAATTCCACCGGCGGCTTCGTTCCGGTTCAGATGCGGAGCGGCGAGAACGTCCGGACTTGGATCGAATTCGACGGTGATAATCTCGAAATCAACGTCACCGTGGCTCCGGCTAATCTGCCACGGCCTACTCTGCCTACGCTGAGCTTCAAAGACCCAAGGATTGCGAACTACGTGTCGTCGGAGATGTTCGTTGGGTTTTCGGCGTCGAAAACGGAGTGGATTGAGGCGCAGAGAATTTTGGCTTGGAGTTTCAGTGACACTGGGGTTGCTAAAGAGATCAACGTGACCAATTTGCCTGTCTTCAAGCTCGAGGCTTCTTCGAAATCCTTGCCTAAGGGAGCCATTGCTGGTATTACAATAGGTTGCGTTTTGTTTGTGGTGACTTCAGCTTATGGAGTGTACTTGTATTGGAGGAAGAAGAAGCTGGAGGATGAAGAAGATGATGAGATTGAGGATTGGGAGATGGAGTATTGGCCCCATCGATTTTCGAATGAAGAGCTGAGTGAGGCTACTGGTGGATTTTCGAAAGATCAGCTTTTGGGTTCTGGTGGATTTGGGAAGGTTTACAGAGGAGTTTTATCGAACAAGACGGAGATAGCAGTGAAATGTGTGAACCATGATTCGAAGCAGGGGTTGAGAGAATTTATGGCAGAGATTTCGAGCATGGGGAGACTGCAGCATAAGAATTTGGTCCAAATGCGAGGGTGGTGCAGAAAAGGAAACCAGCTCATGCTTGTGTATGACTACATGCCTAATGGGAGCCTCAACAGGTGGATTTTCGACAGGCCGAAGAAGGTTTTGGGGTGGGGGCAACGGCGGCGTGTGTTGGCAGACGTGGCGGAGGGGCTGAACTATCTGCACCACGGCTGGGACCAAGTGGTGGTTCATAGAGACATTAAGTCGAGCAATATATTGCTGGACTTGGAAATGAGAGGCAGGCTTGGTGATTTTGGATTGGCCAAGCTGTATGGGCACGGTGAAGTGCCTAATACCACTCGTGTGGTCGGCACGATGGGGTACTTGGCGCCGGAGCTGGCTACCATAGCGTCACCAACAGCAGCGACTGATGTGTATAGCTTTGGAGTGGTGTTGTTGGAAGTGGCGTGTGGAAGGAGGCCTATTGAAATGGGGGCAGAGGAGGAGGAGGAGGCAGTGCTGATCGATTGGGTGAAAGAGTTGTATTCGAAAGGGAGGGTGAGAGAGGCGGCGGACCAGAGAATTAAAGGGGAGTATGATGAGGAGGAGATGGAGGTTGTATTGAAGCTTGGGTTGGCTTGTTGTCATCCTGATCCTCAGAGAAGGCCTAGCATGAAGGAAATTGCGGCAATTTTGGTTGGCGAGACAGTGTCCGAGCCAGCACCTGCCGCATTGTTATCAGAACTAGCACGCGGCGAGGGTGGTGATGGTGCCGGCAGAGAGGAAGAATCAGGGGAAGTAGCATTCCAACCCCAGCATTCAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000152 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009639 GO:0009640 GO:0009641 GO:0009642 GO:0009646 GO:0009647 GO:0009648 GO:0009649 GO:0009791 GO:0009812 GO:0009987 GO:0010119 GO:0010228 GO:0016567 GO:0016604 GO:0016740 GO:0019538 GO:0019787 GO:0022414 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0036211 GO:0042440 GO:0042752 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046283 GO:0046483 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080008 GO:0090304 GO:0140096 GO:1901360 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04115 ko04120 ko04712 map04115 map04120 map04712

Pfam Domains

Protein Families

WD40 zf-C3HC4_2

Protein Analysis

663

Amino Acids

73.28

Weight (kDa)

5.17

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	22 - 274	3.5e-60	Legume lectin domain
Pkinase	PF00069	351 - 617	4.2e-51	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	353 - 619	1.2e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32950 AT2G32950
fragaria_vesca	FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_5g22570 FvH4_5g22570
malus_domestica	MD06G1037700.v1.1 MD10G1328500.v1.1 MD15G1405100.v1.1 MD15G1405200.v1.1 MD16G1272200.v1.1
prunus_persica	Prupe.4G013500_v2.0.a1 Prupe.5G031300_v2.0.a1 Prupe.5G031300_v2.0.a1 Prupe.5G031300_v2.0.a1 Prupe.5G031300_v2.0.a1
pyrus_communis	pycom10g27830 pycom16g24110
rosa_chinensis	RchiOBHm_Chr5g0001791 RchiOBHm_Chr7g0210341
rosa_laevigata	RLG00000003045 RLG00000030973
rosa_multiflora	Rmu_co8137394.1_g000001 Rmu_sc0003807.1_g000002 Rmu_ssc0000237.1_g000012
rosa_roxburghii	Rroxscaffold_1G00071250 Rroxscaffold_1G00074540 Rroxscaffold_3G00248380
rosa_rugosa	Rorug04G0393100 Rorug04G0393200 Rorug04G0393300 Rorug07G0121200 Rorug07G0121200 Rorug07G0121300
rosa_samantha	Rh5AG014400 Rh5BG017800 Rh5CG015500 Rh5DG015900 Rh7AG253900 Rh7BG248800 Rh7CG270700 Rh7DG261400
rosa_wichuraiana	Rw5G001390 Rw7G021640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1897
Acc36I	ACCTGC	1 cut(s)	1897
AccB1I	GGYRCC	2 cut(s)	1552, 1934
AccB7I	CCANNNNNTGG	1 cut(s)	1408
AccBSI	CCGCTC	1 cut(s)	567
AccII	CGCG	1 cut(s)	1917
AccIII	TCCGGA	1 cut(s)	579
AclWI	GGATC	3 cut(s)	449, 596, 1811
AcoI	YGGCCR	2 cut(s)	187, 1485
AcsI	RAATTY	5 cut(s)	422, 593, 762, 1169, 1213
AcuI	CTGAAG	1 cut(s)	897
AcyI	GRCGYC	4 cut(s)	129, 141, 731, 1553
AfaI	GTAC	4 cut(s)	179, 368, 929, 1547
AfiI	CCNNNNNNNGG	4 cut(s)	308, 490, 1396, 1408
AflIII	ACRYGT	1 cut(s)	699
AgsI	TTSAA	7 cut(s)	79, 258, 451, 676, 832, 1652, 1789
AhdI	GACNNNNNGTC	1 cut(s)	1426
AjiI	CACGTC	2 cut(s)	43, 1363
AjnI	CCWGG	2 cut(s)	301, 393
AjuI	GAANNNNNNNTTGG	8 cut(s)	754, 786, 1310, 1342, 1395, 1427, 1781, 1813
AleI	CACNNNNGTG	1 cut(s)	1526
Alw26I	GTCTC	6 cut(s)	100, 214, 380, 1192, 1413, 1862
AlwI	GGATC	3 cut(s)	449, 596, 1811
AlwNI	CAGNNNCTG	2 cut(s)	1592, 1889
Ama87I	CYCGRG	1 cut(s)	836
Aor13HI	TCCGGA	1 cut(s)	579
ApeKI	GCWGC	2 cut(s)	1204, 1586
ApoI	RAATTY	5 cut(s)	422, 593, 762, 1169, 1213
ArsI	GACNNNNNNTTYG	4 cut(s)	606, 638, 686, 718
AspLEI	GCGC	2 cut(s)	757, 1555
AspS9I	GGNCC	7 cut(s)	6, 433, 513, 1002, 1219, 1399, 1738
AsuII	TTCGAA	5 cut(s)	848, 1016, 1052, 1151, 1712
AvaI	CYCGRG	1 cut(s)	836
AvaII	GGWCC	4 cut(s)	6, 1219, 1399, 1738
AxyI	CCTNAGG	1 cut(s)	861
BaeGI	GKGCMC	1 cut(s)	1503
BalI	TGGCCA	1 cut(s)	1487
BanI	GGYRCC	2 cut(s)	1552, 1934
BauI	CACGAG	1 cut(s)	1524
BbsI	GAAGAC	2 cut(s)	262, 820
BbvI	GCAGC	2 cut(s)	1216, 1598
BccI	CCATC	5 cut(s)	985, 1014, 1534, 1768, 1925
BceAI	ACGGC	4 cut(s)	401, 665, 1358, 1408
BcgI	CGANNNNNNTGC	6 cut(s)	838, 872, 1167, 1201, 1218, 1252
BciT130I	CCWGG	2 cut(s)	303, 395
BcoDI	GTCTC	6 cut(s)	100, 214, 380, 1192, 1413, 1862
BfaI	CTAG	3 cut(s)	510, 1833, 1910
BfmI	CTRYAG	1 cut(s)	1202
BfoI	RGCGCY	1 cut(s)	1556
BfuAI	ACCTGC	1 cut(s)	1897
BlpI	GCTNAGC	1 cut(s)	668
BmcAI	AGTACT	2 cut(s)	179, 368
Bme1390I	CCNGG	2 cut(s)	303, 395
Bme18I	GGWCC	4 cut(s)	6, 1219, 1399, 1738
BmeRI	GACNNNNNGTC	1 cut(s)	1426
BmeT110I	CYCGRG	1 cut(s)	836
BmgBI	CACGTC	2 cut(s)	43, 1363
BmgT120I	GGNCC	7 cut(s)	6, 433, 513, 1002, 1219, 1399, 1738
BmiI	GGNNCC	7 cut(s)	633, 868, 1004, 1289, 1400, 1554, 1936
BmrFI	CCNGG	2 cut(s)	303, 395
BmrI	ACTGGG	1 cut(s)	798
BmsI	GCATC	1 cut(s)	549
BmuI	ACTGGG	1 cut(s)	798
BpiI	GAAGAC	2 cut(s)	262, 820
BpmI	CTGGAG	1 cut(s)	974
Bpu1102I	GCTNAGC	1 cut(s)	668
Bpu14I	TTCGAA	5 cut(s)	848, 1016, 1052, 1151, 1712
Bsa29I	ATCGAT	2 cut(s)	1009, 1689
BsaAI	YACGTR	1 cut(s)	700
BsaHI	GRCGYC	4 cut(s)	129, 141, 731, 1553
BsaI	GGTCTC	2 cut(s)	214, 380
BsaJI	CCNNGG	6 cut(s)	301, 393, 627, 647, 683, 1390
BsaWI	WCCGGW	2 cut(s)	550, 579
BsaXI	ACNNNNNCTCC	8 cut(s)	71, 101, 616, 646, 766, 796, 980, 1010
Bsc4I	CCNNNNNNNGG	4 cut(s)	308, 490, 1396, 1408
Bse118I	RCCGGY	3 cut(s)	518, 536, 1937
Bse1I	ACTGG	3 cut(s)	364, 793, 1045
Bse21I	CCTNAGG	1 cut(s)	861
Bse3DI	GCAATG	1 cut(s)	870
BseAI	TCCGGA	1 cut(s)	579
BseBI	CCWGG	2 cut(s)	303, 395
BseCI	ATCGAT	2 cut(s)	1009, 1689
BseDI	CCNNGG	6 cut(s)	301, 393, 627, 647, 683, 1390
BseGI	GGATG	2 cut(s)	964, 1810
BseLI	CCNNNNNNNGG	4 cut(s)	308, 490, 1396, 1408
BseMI	GCAATG	1 cut(s)	870
BseMII	CTCAG	3 cut(s)	659, 1019, 1835
BseNI	ACTGG	3 cut(s)	364, 793, 1045
BseSI	GKGCMC	1 cut(s)	1503
BseX3I	CGGCCG	1 cut(s)	187
BseXI	GCAGC	2 cut(s)	1216, 1598
BseYI	CCCAGC	2 cut(s)	1395, 1977
BsgI	GTGCAG	2 cut(s)	1258, 1370
Bsh1236I	CGCG	1 cut(s)	1917
Bsh1285I	CGRYCG	1 cut(s)	190
BshNI	GGYRCC	2 cut(s)	1552, 1934
BshVI	ATCGAT	2 cut(s)	1009, 1689
BsiEI	CGRYCG	1 cut(s)	190
BsiHKCI	CYCGRG	1 cut(s)	836
BsiSI	CCGG	7 cut(s)	519, 537, 551, 580, 635, 1556, 1938
BslFI	GGGAC	1 cut(s)	1412
BslI	CCNNNNNNNGG	4 cut(s)	308, 490, 1396, 1408
BsmAI	GTCTC	6 cut(s)	100, 214, 380, 1192, 1413, 1862
BsmBI	CGTCTC	1 cut(s)	100
BsmFI	GGGAC	1 cut(s)	1412
BsmI	GAATGC	2 cut(s)	1967, 1981
Bso31I	GGTCTC	2 cut(s)	214, 380
BsoBI	CYCGRG	1 cut(s)	836
Bsp119I	TTCGAA	5 cut(s)	848, 1016, 1052, 1151, 1712
Bsp1286I	GDGCHC	1 cut(s)	1503
Bsp13I	TCCGGA	1 cut(s)	579
Bsp143I	GATC	7 cut(s)	277, 454, 588, 804, 1057, 1686, 1816
Bsp1720I	GCTNAGC	1 cut(s)	668
BspCNI	CTCAG	3 cut(s)	660, 1020, 1834
BspDI	ATCGAT	2 cut(s)	1009, 1689
BspEI	TCCGGA	1 cut(s)	579
BspFNI	CGCG	1 cut(s)	1917
BspLI	GGNNCC	7 cut(s)	633, 868, 1004, 1289, 1400, 1554, 1936
BspMAI	CTGCAG	1 cut(s)	1206
BspMI	ACCTGC	1 cut(s)	1897
BspPI	GGATC	3 cut(s)	449, 596, 1811
BspQI	GCTCTTC	1 cut(s)	1017
BspT104I	TTCGAA	5 cut(s)	848, 1016, 1052, 1151, 1712
BspT107I	GGYRCC	2 cut(s)	1552, 1934
BspTNI	GGTCTC	2 cut(s)	214, 380
BsrBI	CCGCTC	1 cut(s)	567
BsrDI	GCAATG	1 cut(s)	870
BsrFI	RCCGGY	3 cut(s)	518, 536, 1937
BsrI	ACTGG	3 cut(s)	364, 793, 1045
BssAI	RCCGGY	3 cut(s)	518, 536, 1937
BssECI	CCNNGG	6 cut(s)	301, 393, 627, 647, 683, 1390
BssMI	GATC	7 cut(s)	277, 454, 588, 804, 1057, 1686, 1816
BssNI	GRCGYC	4 cut(s)	129, 141, 731, 1553
BssSI	CACGAG	1 cut(s)	1524
BssT1I	CCWWGG	1 cut(s)	683
Bst2BI	CACGAG	1 cut(s)	1524
Bst2UI	CCWGG	2 cut(s)	303, 395
Bst4CI	ACNGT	5 cut(s)	151, 602, 628, 1505, 1873
Bst6I	CTCTTC	4 cut(s)	41, 200, 383, 1017
BstACI	GRCGYC	4 cut(s)	129, 141, 731, 1553
BstBAI	YACGTR	1 cut(s)	700
BstBI	TTCGAA	5 cut(s)	848, 1016, 1052, 1151, 1712
BstC8I	GCNNGC	8 cut(s)	361, 516, 520, 1466, 1563, 1884, 1915, 1939
BstDEI	CTNAG	4 cut(s)	668, 861, 1028, 1821
BstDSI	CCRYGG	3 cut(s)	627, 647, 1390
BstF5I	GGATG	2 cut(s)	964, 1810
BstFNI	CGCG	1 cut(s)	1917
BstH2I	RGCGCY	1 cut(s)	1556
BstHHI	GCGC	2 cut(s)	757, 1555
BstKTI	GATC	7 cut(s)	280, 457, 591, 807, 1060, 1689, 1819
BstMAI	GTCTC	6 cut(s)	100, 214, 380, 1192, 1413, 1862
BstMBI	GATC	7 cut(s)	277, 454, 588, 804, 1057, 1686, 1816
BstMCI	CGRYCG	1 cut(s)	190
BstMWI	GCNNNNNNNGC	7 cut(s)	245, 658, 1345, 1364, 1498, 1571, 1892
BstNI	CCWGG	2 cut(s)	303, 395
BstNSI	RCATGY	1 cut(s)	1279
BstSCI	CCNGG	2 cut(s)	301, 393
BstSFI	CTRYAG	1 cut(s)	1202
BstSLI	GKGCMC	1 cut(s)	1503
BstUI	CGCG	1 cut(s)	1917
BstV1I	GCAGC	2 cut(s)	1216, 1598
BstV2I	GAAGAC	2 cut(s)	262, 820
BstXI	CCANNNNNNTGG	1 cut(s)	1528
BstZI	CGGCCG	1 cut(s)	187
Bsu15I	ATCGAT	2 cut(s)	1009, 1689
Bsu36I	CCTNAGG	1 cut(s)	861
BsuTUI	ATCGAT	2 cut(s)	1009, 1689
BtgI	CCRYGG	3 cut(s)	627, 647, 1390
BtrI	CACGTC	2 cut(s)	43, 1363
BtsCI	GGATG	2 cut(s)	964, 1810
BtsI	GCAGTG	2 cut(s)	1134, 1686
BtsIMutI	CAGTG	6 cut(s)	786, 787, 1134, 1686, 1878, 1992
BveI	ACCTGC	1 cut(s)	1897
Cac8I	GCNNGC	8 cut(s)	361, 516, 520, 1466, 1563, 1884, 1915, 1939
CaiI	CAGNNNCTG	2 cut(s)	1592, 1889
CfoI	GCGC	2 cut(s)	757, 1555
Cfr10I	RCCGGY	3 cut(s)	518, 536, 1937
Cfr13I	GGNCC	7 cut(s)	6, 433, 513, 1002, 1219, 1399, 1738
ClaI	ATCGAT	2 cut(s)	1009, 1689
CseI	GACGC	4 cut(s)	137, 149, 720, 1563
Csp6I	GTAC	4 cut(s)	178, 367, 928, 1546
CviAII	CATG	6 cut(s)	217, 1145, 1192, 1258, 1276, 1837
CviQI	GTAC	4 cut(s)	178, 367, 928, 1546
DdeI	CTNAG	4 cut(s)	668, 861, 1028, 1821
DinI	GGCGCC	1 cut(s)	1554
DpnI	GATC	7 cut(s)	279, 456, 590, 806, 1059, 1688, 1818
DpnII	GATC	7 cut(s)	277, 454, 588, 804, 1057, 1686, 1816
DriI	GACNNNNNGTC	1 cut(s)	1426
EaeI	YGGCCR	2 cut(s)	187, 1485
EagI	CGGCCG	1 cut(s)	187
Eam1104I	CTCTTC	4 cut(s)	41, 200, 383, 1017
Eam1105I	GACNNNNNGTC	1 cut(s)	1426
EarI	CTCTTC	4 cut(s)	41, 200, 383, 1017
EciI	GGCGGA	3 cut(s)	143, 1382, 1751
EclXI	CGGCCG	1 cut(s)	187
Eco130I	CCWWGG	1 cut(s)	683
Eco147I	AGGCCT	2 cut(s)	1645, 1831
Eco31I	GGTCTC	2 cut(s)	214, 380
Eco47I	GGWCC	4 cut(s)	6, 1219, 1399, 1738
Eco52I	CGGCCG	1 cut(s)	187
Eco57I	CTGAAG	1 cut(s)	897
Eco81I	CCTNAGG	1 cut(s)	861
Eco88I	CYCGRG	1 cut(s)	836
EcoO109I	RGGNCCY	1 cut(s)	6
EcoRI	GAATTC	2 cut(s)	422, 593
EcoRII	CCWGG	2 cut(s)	301, 393
EcoT14I	CCWWGG	1 cut(s)	683
EgeI	GGCGCC	1 cut(s)	1554
EheI	GGCGCC	1 cut(s)	1554
ErhI	CCWWGG	1 cut(s)	683
Esp3I	CGTCTC	1 cut(s)	100
FaeI	CATG	6 cut(s)	220, 1148, 1195, 1261, 1279, 1840
FalI	AAGNNNNNCTT	2 cut(s)	1047, 1079
FaqI	GGGAC	1 cut(s)	1412
FatI	CATG	6 cut(s)	216, 1144, 1191, 1257, 1275, 1836
FauI	CCCGC	1 cut(s)	523
FokI	GGATG	2 cut(s)	971, 1797
FspBI	CTAG	3 cut(s)	510, 1833, 1910
GlaI	GCGC	2 cut(s)	756, 1554
GsaI	CCCAGC	2 cut(s)	1399, 1981
GsuI	CTGGAG	1 cut(s)	974
HaeII	RGCGCY	1 cut(s)	1556
HapII	CCGG	7 cut(s)	519, 537, 551, 580, 635, 1556, 1938
HgaI	GACGC	4 cut(s)	137, 149, 720, 1563
HhaI	GCGC	2 cut(s)	757, 1555
Hin1I	GRCGYC	4 cut(s)	129, 141, 731, 1553
Hin1II	CATG	6 cut(s)	220, 1148, 1195, 1261, 1279, 1840
Hin6I	GCGC	2 cut(s)	755, 1553
HinP1I	GCGC	2 cut(s)	755, 1553
HindIII	AAGCTT	1 cut(s)	1790
HinfI	GANTC	5 cut(s)	135, 167, 477, 1148, 1952
HpaII	CCGG	7 cut(s)	519, 537, 551, 580, 635, 1556, 1938
Hpy166II	GTNNAC	3 cut(s)	928, 1093, 1141
Hpy188I	TCNGA	8 cut(s)	277, 476, 502, 558, 709, 1824, 1879, 1906
Hpy188III	TCNNGA	4 cut(s)	458, 580, 611, 1814
Hpy8I	GTNNAC	3 cut(s)	928, 1093, 1141
Hpy99I	CGWCG	7 cut(s)	131, 143, 422, 464, 602, 709, 736
HpyAV	CCTTC	7 cut(s)	94, 274, 1081, 1315, 1632, 1821, 1834
HpyCH4III	ACNGT	5 cut(s)	151, 602, 628, 1505, 1873
HpyCH4IV	ACGT	7 cut(s)	42, 93, 576, 621, 699, 810, 1362
HpyCH4V	TGCA	3 cut(s)	1204, 1239, 1387
HpyF10VI	GCNNNNNNNGC	7 cut(s)	245, 658, 1345, 1364, 1498, 1571, 1892
HpyF3I	CTNAG	4 cut(s)	668, 861, 1028, 1821
HpySE526I	ACGT	7 cut(s)	42, 93, 576, 621, 699, 810, 1362
Hsp92I	GRCGYC	4 cut(s)	129, 141, 731, 1553
Hsp92II	CATG	6 cut(s)	220, 1148, 1195, 1261, 1279, 1840
HspAI	GCGC	2 cut(s)	755, 1553
KasI	GGCGCC	1 cut(s)	1552
Kpn2I	TCCGGA	1 cut(s)	579
KroI	GCCGGC	2 cut(s)	518, 1937
KroNI	GCCGGC	2 cut(s)	520, 1939
Kzo9I	GATC	7 cut(s)	277, 454, 588, 804, 1057, 1686, 1816
LguI	GCTCTTC	1 cut(s)	1017
LmnI	GCTCC	6 cut(s)	409, 564, 637, 866, 1287, 1558
Lsp1109I	GCAGC	2 cut(s)	1216, 1598
LweI	GCATC	1 cut(s)	549
MaeI	CTAG	3 cut(s)	510, 1833, 1910
MaeII	ACGT	7 cut(s)	42, 93, 576, 621, 699, 810, 1362
MaeIII	GTNAC	6 cut(s)	505, 622, 782, 811, 907, 1575
MalI	GATC	7 cut(s)	279, 456, 590, 806, 1059, 1688, 1818
MbiI	CCGCTC	1 cut(s)	567
MboI	GATC	7 cut(s)	277, 454, 588, 804, 1057, 1686, 1816
MhlI	GDGCHC	1 cut(s)	1503
MlsI	TGGCCA	1 cut(s)	1487
MluNI	TGGCCA	1 cut(s)	1487
Mly113I	GGCGCC	1 cut(s)	1553
MlyI	GAGTC	2 cut(s)	129, 161
MmeI	TCCRAC	5 cut(s)	114, 123, 354, 687, 1602
Mox20I	TGGCCA	1 cut(s)	1487
MroI	TCCGGA	1 cut(s)	579
MroNI	GCCGGC	2 cut(s)	518, 1937
MscI	TGGCCA	1 cut(s)	1487
MseI	TTAA	2 cut(s)	1425, 1749
MslI	CAYNNNNRTG	2 cut(s)	1262, 1526
Msp20I	TGGCCA	1 cut(s)	1487
MspI	CCGG	7 cut(s)	519, 537, 551, 580, 635, 1556, 1938
MspR9I	CCNGG	2 cut(s)	303, 395
Mva1269I	GAATGC	2 cut(s)	1967, 1981
MvaI	CCWGG	2 cut(s)	303, 395
MvnI	CGCG	1 cut(s)	1917
MwoI	GCNNNNNNNGC	7 cut(s)	245, 658, 1345, 1364, 1498, 1571, 1892
NaeI	GCCGGC	2 cut(s)	520, 1939
NarI	GGCGCC	1 cut(s)	1553
NdeII	GATC	7 cut(s)	277, 454, 588, 804, 1057, 1686, 1816
NgoMIV	GCCGGC	2 cut(s)	518, 1937
NlaIII	CATG	6 cut(s)	220, 1148, 1195, 1261, 1279, 1840
NlaIV	GGNNCC	7 cut(s)	633, 868, 1004, 1289, 1400, 1554, 1936
NmeAIII	GCCGAG	1 cut(s)	165
NmuCI	GTSAC	6 cut(s)	505, 622, 782, 811, 907, 1575
NspI	RCATGY	1 cut(s)	1279
NspV	TTCGAA	5 cut(s)	848, 1016, 1052, 1151, 1712
OliI	CACNNNNGTG	1 cut(s)	1526
PaeR7I	CTCGAG	1 cut(s)	836
PaqCI	CACCTGC	1 cut(s)	1897
PceI	AGGCCT	2 cut(s)	1645, 1831
PciSI	GCTCTTC	1 cut(s)	1017
PcsI	WCGNNNNNNNCGW	4 cut(s)	135, 147, 273, 618
PctI	GAATGC	2 cut(s)	1967, 1981
PdiI	GCCGGC	2 cut(s)	520, 1939
PfeI	GAWTC	3 cut(s)	477, 1148, 1952
PflFI	GACNNNGTC	1 cut(s)	1873
PflMI	CCANNNNNTGG	1 cut(s)	1408
PleI	GAGTC	2 cut(s)	129, 161
PluTI	GGCGCC	1 cut(s)	1556
PpsI	GAGTC	2 cut(s)	129, 161
Ppu21I	YACGTR	1 cut(s)	700
PpuMI	RGGWCCY	1 cut(s)	6
Psp5II	RGGWCCY	1 cut(s)	6
Psp6I	CCWGG	2 cut(s)	301, 393
PspFI	CCCAGC	2 cut(s)	1395, 1977
PspGI	CCWGG	2 cut(s)	301, 393
PspN4I	GGNNCC	7 cut(s)	633, 868, 1004, 1289, 1400, 1554, 1936
PspPI	GGNCC	7 cut(s)	6, 433, 513, 1002, 1219, 1399, 1738
PspPPI	RGGWCCY	1 cut(s)	6
PspXI	VCTCGAGB	1 cut(s)	836
PstI	CTGCAG	1 cut(s)	1206
PstNI	CAGNNNCTG	2 cut(s)	1592, 1889
PsyI	GACNNNGTC	1 cut(s)	1873
RsaI	GTAC	4 cut(s)	179, 368, 929, 1547
RsaNI	GTAC	4 cut(s)	178, 367, 928, 1546
RseI	CAYNNNNRTG	2 cut(s)	1262, 1526
SapI	GCTCTTC	1 cut(s)	1017
SaqAI	TTAA	2 cut(s)	1425, 1749
Sau3AI	GATC	7 cut(s)	277, 454, 588, 804, 1057, 1686, 1816
Sau96I	GGNCC	7 cut(s)	6, 433, 513, 1002, 1219, 1399, 1738
ScaI	AGTACT	2 cut(s)	179, 368
SchI	GAGTC	2 cut(s)	129, 161
ScrFI	CCNGG	2 cut(s)	303, 395
SduI	GDGCHC	1 cut(s)	1503
SfaNI	GCATC	1 cut(s)	549
SfcI	CTRYAG	1 cut(s)	1202
SfoI	GGCGCC	1 cut(s)	1554
Sfr274I	CTCGAG	1 cut(s)	836
SfuI	TTCGAA	5 cut(s)	848, 1016, 1052, 1151, 1712
SgrAI	CRCCGGYG	1 cut(s)	536
SinI	GGWCC	4 cut(s)	6, 1219, 1399, 1738
SlaI	CTCGAG	1 cut(s)	836
SmiMI	CAYNNNNRTG	2 cut(s)	1262, 1526
SmlI	CTYRAG	1 cut(s)	836
SmoI	CTYRAG	1 cut(s)	836
SseBI	AGGCCT	2 cut(s)	1645, 1831
SspDI	GGCGCC	1 cut(s)	1552
SspMI	CTAG	3 cut(s)	510, 1833, 1910
StuI	AGGCCT	2 cut(s)	1645, 1831
StyD4I	CCNGG	2 cut(s)	301, 393
StyI	CCWWGG	1 cut(s)	683
TaaI	ACNGT	5 cut(s)	151, 602, 628, 1505, 1873
TaiI	ACGT	7 cut(s)	45, 96, 579, 624, 702, 813, 1365
TaqII	GACCGA	1 cut(s)	362
TatI	WGTACW	3 cut(s)	177, 366, 927
TauI	GCSGC	8 cut(s)	192, 543, 570, 1348, 1736, 1853, 1895, 1920
TfiI	GAWTC	3 cut(s)	477, 1148, 1952
Tru1I	TTAA	2 cut(s)	1425, 1749
Tru9I	TTAA	2 cut(s)	1425, 1749
TscAI	CASTG	6 cut(s)	787, 793, 1134, 1686, 1878, 1992
TseFI	GTSAC	6 cut(s)	505, 622, 782, 811, 907, 1575
TseI	GCWGC	2 cut(s)	1204, 1586
Tsp45I	GTSAC	6 cut(s)	505, 622, 782, 811, 907, 1575
TspDTI	ATGAA	4 cut(s)	975, 1035, 1403, 1853
TspGWI	ACGGA	4 cut(s)	160, 477, 755, 1133
TspRI	CASTG	6 cut(s)	787, 793, 1134, 1686, 1878, 1992
Tth111I	GACNNNGTC	1 cut(s)	1873
Van91I	CCANNNNNTGG	1 cut(s)	1408
VpaK11BI	GGWCC	4 cut(s)	6, 1219, 1399, 1738
XapI	RAATTY	5 cut(s)	422, 593, 762, 1169, 1213
XceI	RCATGY	1 cut(s)	1279
XhoI	CTCGAG	1 cut(s)	836
XspI	CTAG	3 cut(s)	510, 1833, 1910
ZrmI	AGTACT	2 cut(s)	179, 368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.