Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001361

Physical Location & Seq

Genomic Coordinates Reverse (-)

9472310 .. 9475232

Gene Structure 2923 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0121200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGTAGCTGGTAACCAAAACAAAACCGCCACCGAAACCCTAAAATTCCTCTGCAGCTACGGCGGCAAGATCCTCCTCCGCCACACCGACGGCCAGCTCCGCTACGTCGGCGGCCACACCCGCGTCCTCTCCGTCGATCCCTCCATTTCCTTCTCAGAATTAATGGTGAAGCTCGCTGAGTTCTGCGGCCACTCCGTCACTCTCAGGTGTCAATTGCCGGACGGCGACTTGGAGACGTTGATTTCGATCAAGTCCGACGAGGATTTGGCGAATCTAATAGAAGAGTACGACCGTGTTTTTCCTTCGTCTCGTTCCTATAAGATCAGAGCGATTCTGTCTCCTCCGAAATCGCTGAAGCAAGTCTCGCCTGCTCAGTCCACAACATCGACCAGCGGCGACTGTTCGCCGTCGAAATCGCTCTACTCCGACTTCGATTCGCCGCCGAAGCGGTACTATTCCCCGACGGCGGTCGGGTTTCAGAGAGGGCCGGGCAAAGTGTGCTACTATCCTTGCCATGTCCAGCGAACTCCCTGCGAGATTCCGTATCAGCATCACCGTTATCACCAGCACCCCCATCAATTTCACGCTCCTCACTGCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000152 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009639 GO:0009640 GO:0009641 GO:0009642 GO:0009646 GO:0009647 GO:0009648 GO:0009649 GO:0009791 GO:0009812 GO:0009987 GO:0010119 GO:0010228 GO:0016567 GO:0016604 GO:0016740 GO:0019538 GO:0019787 GO:0022414 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0036211 GO:0042440 GO:0042752 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046283 GO:0046483 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080008 GO:0090304 GO:0140096 GO:1901360 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04115 ko04120 ko04712 map04115 map04120 map04712

Pfam Domains

Protein Families

WD40 zf-C3HC4_2

Protein Analysis

200

Amino Acids

22.43

Weight (kDa)

8.59

Isoelectric Point (pI)

48.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PB1	PF00564	30 - 109	1.4e-19	PB1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32950 AT2G32950
fragaria_vesca	FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_5g22570 FvH4_5g22570
malus_domestica	MD06G1037700.v1.1 MD10G1328500.v1.1 MD15G1405100.v1.1 MD15G1405200.v1.1 MD16G1272200.v1.1
prunus_persica	Prupe.4G013500_v2.0.a1 Prupe.5G031300_v2.0.a1 Prupe.5G031300_v2.0.a1 Prupe.5G031300_v2.0.a1 Prupe.5G031300_v2.0.a1
pyrus_communis	pycom10g27830 pycom16g24110
rosa_chinensis	RchiOBHm_Chr5g0001791 RchiOBHm_Chr7g0210341
rosa_laevigata	RLG00000003045 RLG00000030973
rosa_multiflora	Rmu_co8137394.1_g000001 Rmu_sc0003807.1_g000002 Rmu_ssc0000237.1_g000012
rosa_roxburghii	Rroxscaffold_1G00071250 Rroxscaffold_1G00074540 Rroxscaffold_3G00248380
rosa_rugosa	Rorug04G0393100 Rorug04G0393200 Rorug04G0393300 Rorug07G0121200 Rorug07G0121200 Rorug07G0121300
rosa_samantha	Rh5AG014400 Rh5BG017800 Rh5CG015500 Rh5DG015900 Rh7AG253900 Rh7BG248800 Rh7CG270700 Rh7DG261400
rosa_wichuraiana	Rw5G001390 Rw7G021640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	123
AclWI	GGATC	2 cut(s)	64, 131
AcoI	YGGCCR	3 cut(s)	91, 112, 187
AcsI	RAATTY	1 cut(s)	44
AcuI	CTGAAG	1 cut(s)	374
AfaI	GTAC	2 cut(s)	287, 452
AfiI	CCNNNNNNNGG	1 cut(s)	466
AluBI	AGCT	4 cut(s)	8, 57, 97, 172
AluI	AGCT	4 cut(s)	8, 57, 97, 172
Alw26I	GTCTC	4 cut(s)	227, 312, 342, 367
AlwI	GGATC	2 cut(s)	64, 131
AoxI	GGCC	4 cut(s)	91, 112, 187, 485
ApeKI	GCWGC	1 cut(s)	54
ApoI	RAATTY	1 cut(s)	44
ArsI	GACNNNNNNTTYG	2 cut(s)	226, 258
AseI	ATTAAT	1 cut(s)	161
AspS9I	GGNCC	1 cut(s)	485
AsuC2I	CCSGG	1 cut(s)	489
AsuHPI	GGTGA	3 cut(s)	178, 545, 554
BbvI	GCAGC	1 cut(s)	66
BccI	CCATC	1 cut(s)	582
BceAI	ACGGC	5 cut(s)	76, 106, 238, 391, 480
BcgI	CGANNNNNNTGC	2 cut(s)	513, 547
BcnI	CCSGG	1 cut(s)	489
BcoDI	GTCTC	4 cut(s)	227, 312, 342, 367
BfmI	CTRYAG	1 cut(s)	52
BisI	GCNGC	6 cut(s)	55, 64, 112, 187, 394, 440
BlsI	GCNGC	6 cut(s)	56, 65, 113, 188, 395, 441
Bme1390I	CCNGG	1 cut(s)	489
BmgT120I	GGNCC	1 cut(s)	485
BmrFI	CCNGG	1 cut(s)	489
BmsI	GCATC	1 cut(s)	559
BoxI	GACNNNNGTC	1 cut(s)	467
BpuMI	CCSGG	1 cut(s)	489
BsaBI	GATNNNNATC	1 cut(s)	245
Bsc4I	CCNNNNNNNGG	1 cut(s)	466
Bse8I	GATNNNNATC	1 cut(s)	245
BseJI	GATNNNNATC	1 cut(s)	245
BseLI	CCNNNNNNNGG	1 cut(s)	466
BseMII	CTCAG	4 cut(s)	168, 168, 217, 386
BseRI	GAGGAG	3 cut(s)	65, 330, 579
BseXI	GCAGC	1 cut(s)	66
Bsh1236I	CGCG	1 cut(s)	123
Bsh1285I	CGRYCG	2 cut(s)	292, 471
BshFI	GGCC	4 cut(s)	93, 114, 189, 487
BsiEI	CGRYCG	2 cut(s)	292, 471
BsiSI	CCGG	2 cut(s)	218, 488
BslI	CCNNNNNNNGG	1 cut(s)	466
BsmAI	GTCTC	4 cut(s)	227, 312, 342, 367
BsmBI	CGTCTC	2 cut(s)	227, 312
BsnI	GGCC	4 cut(s)	93, 114, 189, 487
Bsp143I	GATC	4 cut(s)	69, 136, 246, 321
BspANI	GGCC	4 cut(s)	93, 114, 189, 487
BspCNI	CTCAG	4 cut(s)	167, 169, 216, 385
BspFNI	CGCG	1 cut(s)	123
BspMAI	CTGCAG	1 cut(s)	56
BspPI	GGATC	2 cut(s)	64, 131
BssMI	GATC	4 cut(s)	69, 136, 246, 321
Bst4CI	ACNGT	3 cut(s)	293, 401, 557
Bst6I	CTCTTC	1 cut(s)	276
BstAPI	GCANNNNNTGC	1 cut(s)	498
BstC8I	GCNNGC	3 cut(s)	95, 174, 369
BstDEI	CTNAG	4 cut(s)	154, 177, 203, 372
BstEII	GGTNACC	1 cut(s)	11
BstFNI	CGCG	1 cut(s)	123
BstKTI	GATC	4 cut(s)	72, 139, 249, 324
BstMAI	GTCTC	4 cut(s)	227, 312, 342, 367
BstMBI	GATC	4 cut(s)	69, 136, 246, 321
BstMCI	CGRYCG	2 cut(s)	292, 471
BstMWI	GCNNNNNNNGC	8 cut(s)	60, 63, 99, 108, 120, 364, 445, 498
BstPAI	GACNNNNGTC	1 cut(s)	467
BstPI	GGTNACC	1 cut(s)	11
BstSCI	CCNGG	1 cut(s)	487
BstSFI	CTRYAG	1 cut(s)	52
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	1 cut(s)	66
BstX2I	RGATCY	1 cut(s)	69
BstYI	RGATCY	1 cut(s)	69
BsuRI	GGCC	4 cut(s)	93, 114, 189, 487
BtsI	GCAGTG	1 cut(s)	592
BtsIMutI	CAGTG	1 cut(s)	592
Cac8I	GCNNGC	3 cut(s)	95, 174, 369
Cfr13I	GGNCC	1 cut(s)	485
CseI	GACGC	1 cut(s)	112
Csp6I	GTAC	2 cut(s)	286, 451
CviAII	CATG	1 cut(s)	515
CviJI	RGCY	8 cut(s)	8, 57, 93, 97, 114, 172, 189, 487
CviKI_1	RGCY	8 cut(s)	8, 57, 93, 97, 114, 172, 189, 487
CviQI	GTAC	2 cut(s)	286, 451
DdeI	CTNAG	4 cut(s)	154, 177, 203, 372
DpnI	GATC	4 cut(s)	71, 138, 248, 323
DpnII	GATC	4 cut(s)	69, 136, 246, 321
EaeI	YGGCCR	3 cut(s)	91, 112, 187
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
EciI	GGCGGA	1 cut(s)	68
Eco57I	CTGAAG	1 cut(s)	374
Eco91I	GGTNACC	1 cut(s)	11
EcoO65I	GGTNACC	1 cut(s)	11
Esp3I	CGTCTC	2 cut(s)	227, 312
FaeI	CATG	1 cut(s)	518
FaiI	YATR	2 cut(s)	318, 516
FatI	CATG	1 cut(s)	514
FauI	CCCGC	1 cut(s)	128
Fnu4HI	GCNGC	6 cut(s)	55, 64, 112, 187, 394, 440
Fsp4HI	GCNGC	6 cut(s)	55, 64, 112, 187, 394, 440
GluI	GCNGC	6 cut(s)	55, 64, 112, 187, 394, 440
HaeIII	GGCC	4 cut(s)	93, 114, 189, 487
HapII	CCGG	2 cut(s)	218, 488
HgaI	GACGC	1 cut(s)	112
Hin1II	CATG	1 cut(s)	518
HinfI	GANTC	4 cut(s)	271, 331, 434, 538
HpaII	CCGG	2 cut(s)	218, 488
HphI	GGTGA	3 cut(s)	178, 545, 554
Hpy166II	GTNNAC	1 cut(s)	378
Hpy188I	TCNGA	6 cut(s)	157, 256, 326, 345, 427, 480
Hpy8I	GTNNAC	1 cut(s)	378
Hpy99I	CGWCG	6 cut(s)	92, 110, 137, 260, 412, 466
HpyAV	CCTTC	2 cut(s)	160, 312
HpyCH4III	ACNGT	3 cut(s)	293, 401, 557
HpyCH4IV	ACGT	2 cut(s)	105, 236
HpyCH4V	TGCA	2 cut(s)	54, 597
HpyF10VI	GCNNNNNNNGC	8 cut(s)	60, 63, 99, 108, 120, 364, 445, 498
HpyF3I	CTNAG	4 cut(s)	154, 177, 203, 372
HpySE526I	ACGT	2 cut(s)	105, 236
Hsp92II	CATG	1 cut(s)	518
Kzo9I	GATC	4 cut(s)	69, 136, 246, 321
LmnI	GCTCC	2 cut(s)	102, 592
LpnPI	CCDG	9 cut(s)	107, 190, 231, 381, 403, 501, 533, 544, 578
Lsp1109I	GCAGC	1 cut(s)	66
LweI	GCATC	1 cut(s)	559
MaeII	ACGT	2 cut(s)	105, 236
MaeIII	GTNAC	2 cut(s)	11, 196
MalI	GATC	4 cut(s)	71, 138, 248, 323
MboI	GATC	4 cut(s)	69, 136, 246, 321
MboII	GAAGA	1 cut(s)	293
MfeI	CAATTG	2 cut(s)	212, 598
MflI	RGATCY	1 cut(s)	69
MluCI	AATT	5 cut(s)	44, 158, 212, 578, 598
MmeI	TCCRAC	2 cut(s)	279, 450
MnlI	CCTC	9 cut(s)	59, 83, 86, 137, 151, 253, 351, 476, 600
MseI	TTAA	1 cut(s)	161
MspA1I	CMGCKG	1 cut(s)	393
MspI	CCGG	2 cut(s)	218, 488
MspR9I	CCNGG	1 cut(s)	489
MunI	CAATTG	2 cut(s)	212, 598
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	8 cut(s)	60, 63, 99, 108, 120, 364, 445, 498
NciI	CCSGG	1 cut(s)	489
NdeII	GATC	4 cut(s)	69, 136, 246, 321
NlaIII	CATG	1 cut(s)	518
NmuCI	GTSAC	1 cut(s)	196
PcsI	WCGNNNNNNNCGW	1 cut(s)	242
PfeI	GAWTC	4 cut(s)	271, 331, 434, 538
PkrI	GCNGC	6 cut(s)	56, 65, 113, 188, 395, 441
PshAI	GACNNNNGTC	1 cut(s)	467
PshBI	ATTAAT	1 cut(s)	161
PspEI	GGTNACC	1 cut(s)	11
PspPI	GGNCC	1 cut(s)	485
PstI	CTGCAG	1 cut(s)	56
PsuI	RGATCY	1 cut(s)	69
RsaI	GTAC	2 cut(s)	287, 452
RsaNI	GTAC	2 cut(s)	286, 451
SaqAI	TTAA	1 cut(s)	161
SatI	GCNGC	6 cut(s)	55, 64, 112, 187, 394, 440
Sau3AI	GATC	4 cut(s)	69, 136, 246, 321
Sau96I	GGNCC	1 cut(s)	485
ScrFI	CCNGG	1 cut(s)	489
SetI	ASST	7 cut(s)	10, 59, 99, 108, 174, 209, 239
SfaNI	GCATC	1 cut(s)	559
SfcI	CTRYAG	1 cut(s)	52
Sse9I	AATT	5 cut(s)	44, 158, 212, 578, 598
StyD4I	CCNGG	1 cut(s)	487
TaaI	ACNGT	3 cut(s)	293, 401, 557
TaiI	ACGT	2 cut(s)	108, 239
TaqI	TCGA	5 cut(s)	135, 245, 386, 410, 432
TasI	AATT	5 cut(s)	44, 158, 212, 578, 598
TauI	GCSGC	5 cut(s)	66, 114, 189, 396, 442
TfiI	GAWTC	4 cut(s)	271, 331, 434, 538
Tru1I	TTAA	1 cut(s)	161
Tru9I	TTAA	1 cut(s)	161
TscAI	CASTG	1 cut(s)	599
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	1 cut(s)	54
Tsp45I	GTSAC	1 cut(s)	196
TspGWI	ACGGA	3 cut(s)	121, 184, 531
TspRI	CASTG	1 cut(s)	599
VspI	ATTAAT	1 cut(s)	161
XapI	RAATTY	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.