Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001361

Physical Location & Seq

Genomic Coordinates Reverse (-)

50585265 .. 50586566

Gene Structure 1302 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1405200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGGAGAGAGCTCAATGGGTGGTGCGCTGGTCCCCACCGTGAAATCCGAATACTTCCAGGACTCCGCCGCCGAAACGGCGCCGTTTGACGACGAGCCGGACAAGGACATGAAGTGTCCGATATGCATGCAGATCATCAGAGACGCCTGCCTCACCGCCTGCGGCCATAGTTTCTGCCACGTCTGCATTTCAACTCACCTCCGCATCAAGAGCGATTGCCCTTGCTGCGCTAGCTCCCTCACCCCCGCCAGCATTTTCCCCAATTTCTTGCTCGACAAGGTTCGTTCTTTTCCCGCTTTTTTCAGATTTGGATTTGGACGTGTTTTGGTGTTTGGTTGCCGAGAAAGTGCGCGAAAGTTTGCAACTTTTTATTGGAATTTGCAGTTGCTGAAAAATGTTTTGGATTCTCGGATGGCGAAGAATTTTGAACTTCTTAGTCGGAAATTGAACAAGGGCTGCGAGATTTCGATCAAAGAGCTGGACGGCCTTTTGTCCTTGCTGGAAGAGAAGAGGAGAAAAATGGAGCTACAAGAAGCCGAGAACAGCATGGACATCATGCTTAGCTTCTTACATTGTCTGAGAAGGCAAAAGCTTCAAGAGCTCAATGAGTTAGAGGCCGATCTCAGGTACATCAAGGAGGACATTACTGCCGTTGAGAGGCATAGACTAGAACTATGCAGCTGGGAACAGGAGAGGTCCGCAAAGCTGAGAATGCTTGTTCCCGGTGATCAGCATGGCAACGGCATTGCCTGCAGCACTCAATATGTGCAAGACCGGATGAGTTCTTTCAACCTACAGAACAAGAGAGAGCTGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000152 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009639 GO:0009640 GO:0009641 GO:0009642 GO:0009646 GO:0009647 GO:0009648 GO:0009649 GO:0009791 GO:0009812 GO:0009987 GO:0010119 GO:0010228 GO:0016567 GO:0016604 GO:0016740 GO:0019538 GO:0019787 GO:0022414 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0036211 GO:0042440 GO:0042752 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046283 GO:0046483 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080008 GO:0090304 GO:0140096 GO:1901360 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04115 ko04120 ko04712 map04115 map04120 map04712

Pfam Domains

Protein Families

WD40 zf-C3HC4_2

Protein Analysis

273

Amino Acids

31.19

Weight (kDa)

6.97

Isoelectric Point (pI)

57.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_2	PF13923	38 - 76	6.6e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	39 - 76	6.6e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32950 AT2G32950
fragaria_vesca	FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_5g22570 FvH4_5g22570
malus_domestica	MD06G1037700.v1.1 MD10G1328500.v1.1 MD15G1405100.v1.1 MD15G1405200.v1.1 MD16G1272200.v1.1
prunus_persica	Prupe.4G013500_v2.0.a1 Prupe.5G031300_v2.0.a1 Prupe.5G031300_v2.0.a1 Prupe.5G031300_v2.0.a1 Prupe.5G031300_v2.0.a1
pyrus_communis	pycom10g27830 pycom16g24110
rosa_chinensis	RchiOBHm_Chr5g0001791 RchiOBHm_Chr7g0210341
rosa_laevigata	RLG00000003045 RLG00000030973
rosa_multiflora	Rmu_co8137394.1_g000001 Rmu_sc0003807.1_g000002 Rmu_ssc0000237.1_g000012
rosa_roxburghii	Rroxscaffold_1G00071250 Rroxscaffold_1G00074540 Rroxscaffold_3G00248380
rosa_rugosa	Rorug04G0393100 Rorug04G0393200 Rorug04G0393300 Rorug07G0121200 Rorug07G0121200 Rorug07G0121300
rosa_samantha	Rh5AG014400 Rh5BG017800 Rh5CG015500 Rh5DG015900 Rh7AG253900 Rh7BG248800 Rh7CG270700 Rh7DG261400
rosa_wichuraiana	Rw5G001390 Rw7G021640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	79
AccII	CGCG	1 cut(s)	352
AciI	CCGC	8 cut(s)	66, 69, 156, 162, 202, 246, 294, 699
AcoI	YGGCCR	1 cut(s)	163
AcsI	RAATTY	2 cut(s)	376, 421
AcyI	GRCGYC	2 cut(s)	80, 144
AfaI	GTAC	1 cut(s)	629
AfiI	CCNNNNNNNGG	2 cut(s)	624, 657
AflIII	ACRYGT	1 cut(s)	319
AgsI	TTSAA	5 cut(s)	192, 428, 448, 596, 790
AjiI	CACGTC	2 cut(s)	181, 320
AjnI	CCWGG	1 cut(s)	57
AjuI	GAANNNNNNNTTGG	2 cut(s)	383, 415
Alw21I	GWGCWC	2 cut(s)	14, 603
Alw26I	GTCTC	1 cut(s)	135
AlwNI	CAGNNNCTG	1 cut(s)	388
AoxI	GGCC	3 cut(s)	163, 484, 615
ApeKI	GCWGC	4 cut(s)	225, 456, 678, 753
ApoI	RAATTY	2 cut(s)	376, 421
AspLEI	GCGC	4 cut(s)	28, 82, 230, 352
AspS9I	GGNCC	2 cut(s)	31, 696
AsuC2I	CCSGG	1 cut(s)	723
AsuHPI	GGTGA	4 cut(s)	145, 188, 232, 737
AsuNHI	GCTAGC	1 cut(s)	230
AvaII	GGWCC	2 cut(s)	31, 696
BanI	GGYRCC	1 cut(s)	79
BanII	GRGCYC	2 cut(s)	14, 603
Bbv12I	GWGCWC	2 cut(s)	14, 603
BbvI	GCAGC	4 cut(s)	212, 443, 690, 765
BccI	CCATC	1 cut(s)	406
BceAI	ACGGC	5 cut(s)	67, 93, 499, 635, 757
BcgI	CGANNNNNNTGC	2 cut(s)	109, 143
BciT130I	CCWGG	1 cut(s)	59
BclI	TGATCA	1 cut(s)	727
BcnI	CCSGG	1 cut(s)	723
BcoDI	GTCTC	1 cut(s)	135
BfaI	CTAG	2 cut(s)	231, 668
BfmI	CTRYAG	2 cut(s)	751, 794
BfoI	RGCGCY	1 cut(s)	83
BglI	GCCNNNNNGGC	1 cut(s)	77
BisI	GCNGC	6 cut(s)	69, 163, 226, 457, 679, 754
BlpI	GCTNAGC	1 cut(s)	560
BlsI	GCNGC	6 cut(s)	70, 164, 227, 458, 680, 755
Bme1390I	CCNGG	2 cut(s)	59, 723
Bme18I	GGWCC	2 cut(s)	31, 696
BmgBI	CACGTC	2 cut(s)	181, 320
BmgT120I	GGNCC	2 cut(s)	31, 696
BmiI	GGNNCC	2 cut(s)	33, 81
BmrFI	CCNGG	2 cut(s)	59, 723
BmsI	GCATC	1 cut(s)	213
BmtI	GCTAGC	1 cut(s)	234
Bpu1102I	GCTNAGC	1 cut(s)	560
BpuMI	CCSGG	1 cut(s)	723
BsaBI	GATNNNNATC	1 cut(s)	467
BsaHI	GRCGYC	2 cut(s)	80, 144
BsaWI	WCCGGW	1 cut(s)	774
Bsc4I	CCNNNNNNNGG	2 cut(s)	624, 657
Bse3DI	GCAATG	1 cut(s)	744
Bse8I	GATNNNNATC	1 cut(s)	467
BseBI	CCWGG	1 cut(s)	59
BseGI	GGATG	2 cut(s)	417, 783
BseJI	GATNNNNATC	1 cut(s)	467
BseLI	CCNNNNNNNGG	2 cut(s)	624, 657
BseMI	GCAATG	1 cut(s)	744
BseMII	CTCAG	3 cut(s)	569, 637, 698
BseRI	GAGGAG	1 cut(s)	526
BseXI	GCAGC	4 cut(s)	212, 443, 690, 765
BseYI	CCCAGC	1 cut(s)	681
Bsh1236I	CGCG	1 cut(s)	352
BshFI	GGCC	3 cut(s)	165, 486, 617
BshNI	GGYRCC	1 cut(s)	79
BsiHKAI	GWGCWC	2 cut(s)	14, 603
BsiSI	CCGG	3 cut(s)	98, 723, 775
BslFI	GGGAC	1 cut(s)	17
BslI	CCNNNNNNNGG	2 cut(s)	624, 657
BsmAI	GTCTC	1 cut(s)	135
BsmBI	CGTCTC	1 cut(s)	135
BsmFI	GGGAC	1 cut(s)	17
BsmI	GAATGC	1 cut(s)	717
BsnI	GGCC	3 cut(s)	165, 486, 617
Bsp1286I	GDGCHC	2 cut(s)	14, 603
Bsp143I	GATC	4 cut(s)	132, 468, 619, 727
Bsp1720I	GCTNAGC	1 cut(s)	560
BspACI	CCGC	8 cut(s)	66, 69, 156, 162, 202, 246, 294, 699
BspANI	GGCC	3 cut(s)	165, 486, 617
BspCNI	CTCAG	3 cut(s)	570, 636, 699
BspFNI	CGCG	1 cut(s)	352
BspLI	GGNNCC	2 cut(s)	33, 81
BspMAI	CTGCAG	1 cut(s)	755
BspOI	GCTAGC	1 cut(s)	234
BspT107I	GGYRCC	1 cut(s)	79
BsrDI	GCAATG	1 cut(s)	744
BssMI	GATC	4 cut(s)	132, 468, 619, 727
BssNI	GRCGYC	2 cut(s)	80, 144
Bst2UI	CCWGG	1 cut(s)	59
Bst4CI	ACNGT	1 cut(s)	40
Bst6I	CTCTTC	2 cut(s)	498, 503
BstACI	GRCGYC	2 cut(s)	80, 144
BstAPI	GCANNNNNTGC	1 cut(s)	750
BstC8I	GCNNGC	6 cut(s)	128, 148, 160, 232, 250, 751
BstDEI	CTNAG	5 cut(s)	434, 560, 578, 623, 707
BstF5I	GGATG	2 cut(s)	417, 783
BstFNI	CGCG	1 cut(s)	352
BstH2I	RGCGCY	1 cut(s)	83
BstHHI	GCGC	4 cut(s)	28, 82, 230, 352
BstKTI	GATC	4 cut(s)	135, 471, 622, 730
BstMAI	GTCTC	1 cut(s)	135
BstMBI	GATC	4 cut(s)	132, 468, 619, 727
BstMWI	GCNNNNNNNGC	8 cut(s)	77, 183, 210, 225, 231, 598, 712, 750
BstNI	CCWGG	1 cut(s)	59
BstNSI	RCATGY	1 cut(s)	130
BstSCI	CCNGG	2 cut(s)	57, 721
BstSFI	CTRYAG	2 cut(s)	751, 794
BstUI	CGCG	1 cut(s)	352
BstV1I	GCAGC	4 cut(s)	212, 443, 690, 765
BsuRI	GGCC	3 cut(s)	165, 486, 617
BtrI	CACGTC	2 cut(s)	181, 320
BtsCI	GGATG	2 cut(s)	417, 783
Cac8I	GCNNGC	6 cut(s)	128, 148, 160, 232, 250, 751
CaiI	CAGNNNCTG	1 cut(s)	388
CfoI	GCGC	4 cut(s)	28, 82, 230, 352
Cfr13I	GGNCC	2 cut(s)	31, 696
CseI	GACGC	1 cut(s)	152
Csp6I	GTAC	1 cut(s)	628
CviAII	CATG	5 cut(s)	109, 127, 547, 556, 734
CviQI	GTAC	1 cut(s)	628
DdeI	CTNAG	5 cut(s)	434, 560, 578, 623, 707
DinI	GGCGCC	1 cut(s)	81
DpnI	GATC	4 cut(s)	134, 470, 621, 729
DpnII	GATC	4 cut(s)	132, 468, 619, 727
EaeI	YGGCCR	1 cut(s)	163
Eam1104I	CTCTTC	2 cut(s)	498, 503
EarI	CTCTTC	2 cut(s)	498, 503
EciI	GGCGGA	1 cut(s)	55
Ecl136II	GAGCTC	2 cut(s)	12, 601
Eco24I	GRGCYC	2 cut(s)	14, 603
Eco47I	GGWCC	2 cut(s)	31, 696
Eco53kI	GAGCTC	2 cut(s)	12, 601
EcoICRI	GAGCTC	2 cut(s)	12, 601
EcoRII	CCWGG	1 cut(s)	57
EcoT22I	ATGCAT	1 cut(s)	128
EcoT38I	GRGCYC	2 cut(s)	14, 603
EgeI	GGCGCC	1 cut(s)	81
EheI	GGCGCC	1 cut(s)	81
Esp3I	CGTCTC	1 cut(s)	135
FaeI	CATG	5 cut(s)	112, 130, 550, 559, 737
FaqI	GGGAC	1 cut(s)	17
FatI	CATG	5 cut(s)	108, 126, 546, 555, 733
FauI	CCCGC	2 cut(s)	253, 301
FbaI	TGATCA	1 cut(s)	727
Fnu4HI	GCNGC	6 cut(s)	69, 163, 226, 457, 679, 754
FokI	GGATG	2 cut(s)	424, 790
FriOI	GRGCYC	2 cut(s)	14, 603
Fsp4HI	GCNGC	6 cut(s)	69, 163, 226, 457, 679, 754
FspBI	CTAG	2 cut(s)	231, 668
GlaI	GCGC	4 cut(s)	27, 81, 229, 351
GluI	GCNGC	6 cut(s)	69, 163, 226, 457, 679, 754
GsaI	CCCAGC	1 cut(s)	685
HaeII	RGCGCY	1 cut(s)	83
HaeIII	GGCC	3 cut(s)	165, 486, 617
HapII	CCGG	3 cut(s)	98, 723, 775
HgaI	GACGC	1 cut(s)	152
HhaI	GCGC	4 cut(s)	28, 82, 230, 352
Hin1I	GRCGYC	2 cut(s)	80, 144
Hin1II	CATG	5 cut(s)	112, 130, 550, 559, 737
Hin6I	GCGC	4 cut(s)	26, 80, 228, 350
HinP1I	GCGC	4 cut(s)	26, 80, 228, 350
HindIII	AAGCTT	1 cut(s)	590
HinfI	GANTC	2 cut(s)	62, 404
HpaII	CCGG	3 cut(s)	98, 723, 775
HphI	GGTGA	4 cut(s)	145, 188, 232, 737
Hpy188I	TCNGA	7 cut(s)	49, 120, 140, 305, 411, 441, 579
Hpy188III	TCNNGA	2 cut(s)	208, 596
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	1 cut(s)	576
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4IV	ACGT	2 cut(s)	180, 319
HpyCH4V	TGCA	8 cut(s)	126, 130, 186, 362, 382, 678, 753, 769
HpyF10VI	GCNNNNNNNGC	8 cut(s)	77, 183, 210, 225, 231, 598, 712, 750
HpyF3I	CTNAG	5 cut(s)	434, 560, 578, 623, 707
HpySE526I	ACGT	2 cut(s)	180, 319
Hsp92I	GRCGYC	2 cut(s)	80, 144
Hsp92II	CATG	5 cut(s)	112, 130, 550, 559, 737
HspAI	GCGC	4 cut(s)	26, 80, 228, 350
KasI	GGCGCC	1 cut(s)	79
Ksp22I	TGATCA	1 cut(s)	727
Kzo9I	GATC	4 cut(s)	132, 468, 619, 727
LmnI	GCTCC	2 cut(s)	239, 523
Lsp1109I	GCAGC	4 cut(s)	212, 443, 690, 765
LweI	GCATC	1 cut(s)	213
MaeI	CTAG	2 cut(s)	231, 668
MaeII	ACGT	2 cut(s)	180, 319
MalI	GATC	4 cut(s)	134, 470, 621, 729
MboI	GATC	4 cut(s)	132, 468, 619, 727
MboII	GAAGA	3 cut(s)	430, 515, 520
MhlI	GDGCHC	2 cut(s)	14, 603
MluCI	AATT	4 cut(s)	262, 376, 421, 443
Mly113I	GGCGCC	1 cut(s)	80
MlyI	GAGTC	1 cut(s)	56
MmeI	TCCRAC	1 cut(s)	419
MnlI	CCTC	8 cut(s)	161, 209, 248, 504, 607, 631, 651, 687
Mph1103I	ATGCAT	1 cut(s)	128
MspA1I	CMGCKG	1 cut(s)	681
MspI	CCGG	3 cut(s)	98, 723, 775
MspR9I	CCNGG	2 cut(s)	59, 723
Mva1269I	GAATGC	1 cut(s)	717
MvaI	CCWGG	1 cut(s)	59
MvnI	CGCG	1 cut(s)	352
MwoI	GCNNNNNNNGC	8 cut(s)	77, 183, 210, 225, 231, 598, 712, 750
NarI	GGCGCC	1 cut(s)	80
NciI	CCSGG	1 cut(s)	723
NdeII	GATC	4 cut(s)	132, 468, 619, 727
NheI	GCTAGC	1 cut(s)	230
NlaIII	CATG	5 cut(s)	112, 130, 550, 559, 737
NlaIV	GGNNCC	2 cut(s)	33, 81
NmeAIII	GCCGAG	2 cut(s)	365, 562
NsiI	ATGCAT	1 cut(s)	128
NspI	RCATGY	1 cut(s)	130
PaeI	GCATGC	1 cut(s)	130
PctI	GAATGC	1 cut(s)	717
PfeI	GAWTC	1 cut(s)	404
PfoI	TCCNGGA	1 cut(s)	57
PkrI	GCNGC	6 cut(s)	70, 164, 227, 458, 680, 755
PleI	GAGTC	1 cut(s)	56
PluTI	GGCGCC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	56
Psp124BI	GAGCTC	2 cut(s)	14, 603
Psp6I	CCWGG	1 cut(s)	57
PspFI	CCCAGC	1 cut(s)	681
PspGI	CCWGG	1 cut(s)	57
PspN4I	GGNNCC	2 cut(s)	33, 81
PspPI	GGNCC	2 cut(s)	31, 696
PstI	CTGCAG	1 cut(s)	755
PstNI	CAGNNNCTG	1 cut(s)	388
PvuII	CAGCTG	1 cut(s)	681
RsaI	GTAC	1 cut(s)	629
RsaNI	GTAC	1 cut(s)	628
SacI	GAGCTC	2 cut(s)	14, 603
SatI	GCNGC	6 cut(s)	69, 163, 226, 457, 679, 754
Sau3AI	GATC	4 cut(s)	132, 468, 619, 727
Sau96I	GGNCC	2 cut(s)	31, 696
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	2 cut(s)	59, 723
SduI	GDGCHC	2 cut(s)	14, 603
SfaNI	GCATC	1 cut(s)	213
SfcI	CTRYAG	2 cut(s)	751, 794
SfoI	GGCGCC	1 cut(s)	81
SinI	GGWCC	2 cut(s)	31, 696
SphI	GCATGC	1 cut(s)	130
Sse9I	AATT	4 cut(s)	262, 376, 421, 443
SsiI	CCGC	8 cut(s)	66, 69, 156, 162, 202, 246, 294, 699
SspDI	GGCGCC	1 cut(s)	79
SspMI	CTAG	2 cut(s)	231, 668
SstI	GAGCTC	2 cut(s)	14, 603
StyD4I	CCNGG	2 cut(s)	57, 721
TaaI	ACNGT	1 cut(s)	40
TaiI	ACGT	2 cut(s)	183, 322
TaqI	TCGA	2 cut(s)	273, 467
TasI	AATT	4 cut(s)	262, 376, 421, 443
TauI	GCSGC	2 cut(s)	71, 165
TfiI	GAWTC	1 cut(s)	404
TseI	GCWGC	4 cut(s)	225, 456, 678, 753
TspDTI	ATGAA	1 cut(s)	125
VpaK11BI	GGWCC	2 cut(s)	31, 696
XapI	RAATTY	2 cut(s)	376, 421
XceI	RCATGY	1 cut(s)	130
XspI	CTAG	2 cut(s)	231, 668
Zsp2I	ATGCAT	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.