Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8137394.1

Orthogroup ID

OG0001361

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 573

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8137394.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgtcaattagagagctggaagggctgttgtctcttcttgaagagaagaagaggaaaatggagctgcaagagtctgagtcgagcatggagatcatgcttgggttcttgcattgccttagaaggcaaaagctagaggcgctcaatgagatacaagctgatcttgattacattaaggaggacatgcttgcggtggagagacgtagaattgaactatacaggcaacaacagaataggtcagtgagactgagaatgcttggtgatggtcagcagagcaatgacattgtctatagtgcacaatatgtgcaagcgcagatgagttctatcaatttacataacaacagggctgttgtaaatgatgatgtgcaagaccatacacagtctatgcagcctgttactccccaagtactgtcggtggcaaggaagaggcgagtacattcacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000152 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009639 GO:0009640 GO:0009641 GO:0009642 GO:0009646 GO:0009647 GO:0009648 GO:0009649 GO:0009791 GO:0009812 GO:0009987 GO:0010119 GO:0010228 GO:0016567 GO:0016604 GO:0016740 GO:0019538 GO:0019787 GO:0022414 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0036211 GO:0042440 GO:0042752 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046283 GO:0046483 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080008 GO:0090304 GO:0140096 GO:1901360 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04115 ko04120 ko04712 map04115 map04120 map04712

Pfam Domains

Protein Families

WD40 zf-C3HC4_2

Protein Analysis

147

Amino Acids

17.25

Weight (kDa)

6.92

Isoelectric Point (pI)

77.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32950 AT2G32950
fragaria_vesca	FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_5g22570 FvH4_5g22570
malus_domestica	MD06G1037700.v1.1 MD10G1328500.v1.1 MD15G1405100.v1.1 MD15G1405200.v1.1 MD16G1272200.v1.1
prunus_persica	Prupe.4G013500_v2.0.a1 Prupe.5G031300_v2.0.a1 Prupe.5G031300_v2.0.a1 Prupe.5G031300_v2.0.a1 Prupe.5G031300_v2.0.a1
pyrus_communis	pycom10g27830 pycom16g24110
rosa_chinensis	RchiOBHm_Chr5g0001791 RchiOBHm_Chr7g0210341
rosa_laevigata	RLG00000003045 RLG00000030973
rosa_multiflora	Rmu_co8137394.1_g000001 Rmu_sc0003807.1_g000002 Rmu_ssc0000237.1_g000012
rosa_roxburghii	Rroxscaffold_1G00071250 Rroxscaffold_1G00074540 Rroxscaffold_3G00248380
rosa_rugosa	Rorug04G0393100 Rorug04G0393200 Rorug04G0393300 Rorug07G0121200 Rorug07G0121200 Rorug07G0121300
rosa_samantha	Rh5AG014400 Rh5BG017800 Rh5CG015500 Rh5DG015900 Rh7AG253900 Rh7BG248800 Rh7CG270700 Rh7DG261400
rosa_wichuraiana	Rw5G001390 Rw7G021640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	188
AfaI	GTAC	2 cut(s)	405, 432
AgsI	TTSAA	2 cut(s)	41, 209
AluBI	AGCT	4 cut(s)	16, 64, 130, 155
AluI	AGCT	4 cut(s)	16, 64, 130, 155
Alw21I	GWGCWC	1 cut(s)	295
Alw26I	GTCTC	3 cut(s)	36, 190, 235
Alw44I	GTGCAC	1 cut(s)	291
ApaLI	GTGCAC	1 cut(s)	291
ApeKI	GCWGC	2 cut(s)	64, 385
AspLEI	GCGC	2 cut(s)	139, 310
AsuHPI	GGTGA	1 cut(s)	269
BaeGI	GKGCMC	1 cut(s)	295
Bbv12I	GWGCWC	1 cut(s)	295
BbvI	GCAGC	2 cut(s)	51, 397
BccI	CCATC	1 cut(s)	254
BcoDI	GTCTC	3 cut(s)	36, 190, 235
BfaI	CTAG	1 cut(s)	131
BfmI	CTRYAG	1 cut(s)	286
BfoI	RGCGCY	1 cut(s)	140
BisI	GCNGC	2 cut(s)	65, 386
BlsI	GCNGC	2 cut(s)	66, 387
BmcAI	AGTACT	1 cut(s)	405
Bse3DI	GCAATG	2 cut(s)	109, 280
BseMI	GCAATG	2 cut(s)	109, 280
BseMII	CTCAG	2 cut(s)	66, 236
BseSI	GKGCMC	1 cut(s)	295
BseXI	GCAGC	2 cut(s)	51, 397
BsiHKAI	GWGCWC	1 cut(s)	295
BsmAI	GTCTC	3 cut(s)	36, 190, 235
BsmBI	CGTCTC	1 cut(s)	190
BsmI	GAATGC	1 cut(s)	255
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp143I	GATC	2 cut(s)	90, 157
BspACI	CCGC	1 cut(s)	188
BspCNI	CTCAG	2 cut(s)	67, 237
BsrDI	GCAATG	2 cut(s)	109, 280
BssMI	GATC	2 cut(s)	90, 157
Bst4CI	ACNGT	2 cut(s)	378, 408
Bst6I	CTCTTC	4 cut(s)	36, 39, 44, 416
BstC8I	GCNNGC	2 cut(s)	186, 306
BstDEI	CTNAG	3 cut(s)	75, 116, 245
BstH2I	RGCGCY	1 cut(s)	140
BstHHI	GCGC	2 cut(s)	139, 310
BstKTI	GATC	2 cut(s)	93, 160
BstMAI	GTCTC	3 cut(s)	36, 190, 235
BstMBI	GATC	2 cut(s)	90, 157
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 136
BstNSI	RCATGY	1 cut(s)	184
BstSFI	CTRYAG	1 cut(s)	286
BstSLI	GKGCMC	1 cut(s)	295
BstV1I	GCAGC	2 cut(s)	51, 397
BtsIMutI	CAGTG	1 cut(s)	243
Cac8I	GCNNGC	2 cut(s)	186, 306
CfoI	GCGC	2 cut(s)	139, 310
Csp6I	GTAC	2 cut(s)	404, 431
CviAII	CATG	3 cut(s)	85, 94, 181
CviJI	RGCY	7 cut(s)	16, 25, 64, 130, 155, 344, 388
CviKI_1	RGCY	7 cut(s)	16, 25, 64, 130, 155, 344, 388
CviQI	GTAC	2 cut(s)	404, 431
DdeI	CTNAG	3 cut(s)	75, 116, 245
DpnI	GATC	2 cut(s)	92, 159
DpnII	GATC	2 cut(s)	90, 157
Eam1104I	CTCTTC	4 cut(s)	36, 39, 44, 416
EarI	CTCTTC	4 cut(s)	36, 39, 44, 416
Esp3I	CGTCTC	1 cut(s)	190
FaeI	CATG	3 cut(s)	88, 97, 184
FaiI	YATR	9 cut(s)	86, 95, 182, 214, 288, 300, 333, 372, 383
FalI	AAGNNNNNCTT	2 cut(s)	144, 176
FatI	CATG	3 cut(s)	84, 93, 180
Fnu4HI	GCNGC	2 cut(s)	65, 386
Fsp4HI	GCNGC	2 cut(s)	65, 386
FspBI	CTAG	1 cut(s)	131
GlaI	GCGC	2 cut(s)	138, 309
GluI	GCNGC	2 cut(s)	65, 386
HaeII	RGCGCY	1 cut(s)	140
HhaI	GCGC	2 cut(s)	139, 310
Hin1II	CATG	3 cut(s)	88, 97, 184
Hin6I	GCGC	2 cut(s)	137, 308
HinP1I	GCGC	2 cut(s)	137, 308
HinfI	GANTC	2 cut(s)	71, 77
HphI	GGTGA	1 cut(s)	269
Hpy166II	GTNNAC	1 cut(s)	293
Hpy188I	TCNGA	1 cut(s)	76
Hpy188III	TCNNGA	2 cut(s)	38, 161
Hpy8I	GTNNAC	1 cut(s)	293
HpyAV	CCTTC	2 cut(s)	14, 114
HpyCH4III	ACNGT	2 cut(s)	378, 408
HpyCH4IV	ACGT	1 cut(s)	199
HpyCH4V	TGCA	6 cut(s)	67, 109, 293, 304, 364, 385
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 136
HpyF3I	CTNAG	3 cut(s)	75, 116, 245
HpySE526I	ACGT	1 cut(s)	199
Hsp92II	CATG	3 cut(s)	88, 97, 184
HspAI	GCGC	2 cut(s)	137, 308
Kzo9I	GATC	2 cut(s)	90, 157
LmnI	GCTCC	1 cut(s)	61
LpnPI	CCDG	4 cut(s)	2, 202, 325, 402
Lsp1109I	GCAGC	2 cut(s)	51, 397
MaeI	CTAG	1 cut(s)	131
MaeII	ACGT	1 cut(s)	199
MaeIII	GTNAC	1 cut(s)	391
MalI	GATC	2 cut(s)	92, 159
MboI	GATC	2 cut(s)	90, 157
MboII	GAAGA	5 cut(s)	26, 53, 58, 61, 433
MhlI	GDGCHC	1 cut(s)	295
MluCI	AATT	3 cut(s)	6, 204, 325
MlyI	GAGTC	2 cut(s)	80, 86
MnlI	CCTC	4 cut(s)	45, 127, 169, 417
MseI	TTAA	1 cut(s)	171
Mva1269I	GAATGC	1 cut(s)	255
MwoI	GCNNNNNNNGC	2 cut(s)	22, 136
NdeII	GATC	2 cut(s)	90, 157
NlaIII	CATG	3 cut(s)	88, 97, 184
NspI	RCATGY	1 cut(s)	184
PctI	GAATGC	1 cut(s)	255
PflFI	GACNNNGTC	1 cut(s)	281
PkrI	GCNGC	2 cut(s)	66, 387
PleI	GAGTC	2 cut(s)	79, 85
PpsI	GAGTC	2 cut(s)	79, 85
PsyI	GACNNNGTC	1 cut(s)	281
RsaI	GTAC	2 cut(s)	405, 432
RsaNI	GTAC	2 cut(s)	404, 431
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	2 cut(s)	65, 386
Sau3AI	GATC	2 cut(s)	90, 157
ScaI	AGTACT	1 cut(s)	405
SchI	GAGTC	2 cut(s)	80, 86
SduI	GDGCHC	1 cut(s)	295
SetI	ASST	6 cut(s)	18, 66, 132, 157, 202, 236
SfcI	CTRYAG	1 cut(s)	286
Sse9I	AATT	3 cut(s)	6, 204, 325
SsiI	CCGC	1 cut(s)	188
SspMI	CTAG	1 cut(s)	131
TaaI	ACNGT	2 cut(s)	378, 408
TaiI	ACGT	1 cut(s)	202
TaqI	TCGA	1 cut(s)	80
TasI	AATT	3 cut(s)	6, 204, 325
TatI	WGTACW	2 cut(s)	403, 430
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TscAI	CASTG	1 cut(s)	243
TseI	GCWGC	2 cut(s)	64, 385
TspRI	CASTG	1 cut(s)	243
Tth111I	GACNNNGTC	1 cut(s)	281
VneI	GTGCAC	1 cut(s)	291
XceI	RCATGY	1 cut(s)	184
XspI	CTAG	1 cut(s)	131
ZrmI	AGTACT	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.