Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001361

Physical Location & Seq

Genomic Coordinates Forward (+)

1131604 .. 1135433

Gene Structure 3830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G001390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1926 bp

ATGGGTGGAGGACCAATGTTCCCGACCGTGGCGAATCTGGAGCTAATGGCGGCGGACTCATCGTCGGCGGAAACGGCGGCGTTTCTGAAGGAGGCTCCGCCGGACAAGGACTTGATGTGTCCGATATGCATACAGGTGATAAGGGACGCGTTCCTCACTGCTTGCGGCCATAGCTTCTGCCACAGCTGCATAGTCACTCATCTCGGAATCAAGAGCGACTGTCCTTGCTGTGGTCAACACCTCACCCCCAGCCTAATCTTTCCCAATTTCTTGCTCGACAAGTTGTTGAGAAAATCTCTGGCGTGTCGGATGGAGAGGACCGGATCGCCGTTGGAGCATCTGCGGCAGAAATTGCATGAGGGTTGCGATATGTCAATTAGAGAGCTGGAAGGGCTGTTGTCTCTTCTTGAAGAGAAGAAGAGGAAAATGGAGCTGCAAGAGTCTGAGTCGAGCATGGAGATCATGCTTGGGTTCTTGCATTGCCTTAGAAGGCAAAAGCTAGAGGCGCTCAATGAGATACAAGCTGATCTTGATTACATTAAGGAGGACATGCTTGCGGTGGAGAGACGTAGAATTGAACTATACAGGCAACAACAGAATAGGTCAGTGAGACTGAGAATGCTTGGTGATGATCAGCAGAGCAATGACATTGTCTATAGTGCACAATATGTGCAAGCGCAGATGAGTTCTATCAATTTACATAACAACAGGGCTGTTGTAAATGCTGATGTGCAAGACCATACACAGTCTATGCAGCCTGTTACTCCCCAAGTACTGTCGGTGGCAAGGAAGAGGCGAGTACATTCACAGTTCAACGACCTACAAGAGTGTTACTTGCAAAAGCGGCGAAATTGGAACAAACAAGGGGATTCATATGCTATGGATATAGAAGATTATAATCCAGGCCTTGAAGACTTCCACTCTGTGCTAAAGGGCTTTACACAGTACAGCCGATTGAGGGTCATTTCTGAACTGAGACAAGGTGATATTTTTCACTCTGCAAATATTGTGTCGAGCATAGAATTTGATCGAGACGAGCAATTGTTTGCTACTGCTGGGGTTTCACGGTGCATCAAGGTTTTTGAGTTTTCCTCGGTTGTTAATGAACCTGAAGATATCCACTGTGCTGTCGAAGAGATATCCACACGATCCAAACTTAGTTGCTTGAGCTGGAATAAGTACACTAAAAACCAAATTGCTAGTAGTGACTACGAGGGGATAGTAACAGTTTGGGATGTAACTACTCGTCAGAGTGTGATGGAATATGAGGAGCATGAAAAGCGAGCTTGGAGTGTTGATTTTTCAAGCACCGATCCTTCAATGCTTGTGTCTGGAGGTGATGACTGCAAGGTCAAAATTTGGTGCACAAATCAAGAAGAAAGTGTTCGGAACATCGACATGAAGGCAAACATTTGTTCTGTCAAGTATAATCCCGGATCCAGCTTTTTCGTGGCAGTTGGTTCTGCAGATCATCACATTCATTATTATGACTTGAGAAATGTCAGCCAACCGCTGCATGTGTTTAGCGGGCATAGGAAAGCTGTTTCGTATGTGAAATTCTTGTCTAACAATGAACTTTCTTCTGCATCCACTGACAGCACATTGCGACTGTGGGATGTAAAGGAAAACCTGCCGTTGTGCACGTATAGAGGCCACATGAATGAGAAGAACTTTGTAGGTCTTGCAGTAAACAATGACTACATTGCTTGCGGTAGTGAGACAAACGAAGTGTTCGTTTATCACAAGGGAATCCCAAAACCTATGGCTTGGCATAAATTCGGCTCATCGGATTTAAACTACAACAACGAAGAAGACGATGGTGCAGGGTCATACTTTATCAGTGCCGTATGTTGGAAGAGGGATAGCCCGATGATACTGACGGCGAACAGTCAAGGAACGATTAAAGTTCTTGTACTTGCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000152 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009639 GO:0009640 GO:0009641 GO:0009642 GO:0009646 GO:0009647 GO:0009648 GO:0009649 GO:0009791 GO:0009812 GO:0009987 GO:0010119 GO:0010228 GO:0016567 GO:0016604 GO:0016740 GO:0019538 GO:0019787 GO:0022414 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0036211 GO:0042440 GO:0042752 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046283 GO:0046483 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080008 GO:0090304 GO:0140096 GO:1901360 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04115 ko04120 ko04712 map04115 map04120 map04712

Pfam Domains

Protein Families

WD40 zf-C3HC4_2

Protein Analysis

641

Amino Acids

72.76

Weight (kDa)

5.84

Isoelectric Point (pI)

57.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_2	PF13923	39 - 77	9.8e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	40 - 77	1.6e-06	Zinc finger, C3HC4 type (RING finger)
Beta-prop_WDR3_2nd	PF25172	333 - 497	3.3e-07	WDR3 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	334 - 466	8.6e-12	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	335 - 581	1.7e-33	WDR5 beta-propeller domain
Beta-prop_RIG_2nd	PF23775	335 - 446	1.1e-09	RIG second beta-propeller
WDR55	PF24796	335 - 553	7.6e-12	WDR55
WD40_MABP1-WDR62_1st	PF24780	381 - 498	1.4e-06	MABP1/WDR62 first WD40 domain
WD40_Gbeta	PF25391	381 - 510	6.3e-07	G protein beta WD-40 repeat protein
WD40_Prp19	PF24814	382 - 499	8.7e-12	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	383 - 501	3.3e-16	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	383 - 503	1.9e-15	CDC20/Fizzy WD40 domain
Beta-prop_EML_2	PF23414	395 - 523	2.1e-12	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_EML	PF23409	402 - 566	1.2e-07	Echinoderm microtubule-associated protein first beta-propeller
WD40_Gbeta	PF25391	436 - 566	7.9e-11	G protein beta WD-40 repeat protein
Beta-prop_WDR36-Utp21_2nd	PF25168	441 - 550	3.9e-11	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	466 - 572	8.8e-14	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	468 - 575	1.7e-11	Prp19 WD40 domain
WD40_WDHD1_1st	PF24817	469 - 545	2.3e-08	WDHD1 first WD40 domain
WD40_CDC20-Fz	PF24807	473 - 582	4.1e-08	CDC20/Fizzy WD40 domain
Beta-prop_THOC3	PF25174	485 - 638	4.9e-12	THOC3 beta-propeller domain
WD40	PF00400	503 - 539	7.9e-06	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32950 AT2G32950
fragaria_vesca	FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_5g22570 FvH4_5g22570
malus_domestica	MD06G1037700.v1.1 MD10G1328500.v1.1 MD15G1405100.v1.1 MD15G1405200.v1.1 MD16G1272200.v1.1
prunus_persica	Prupe.4G013500_v2.0.a1 Prupe.5G031300_v2.0.a1 Prupe.5G031300_v2.0.a1 Prupe.5G031300_v2.0.a1 Prupe.5G031300_v2.0.a1
pyrus_communis	pycom10g27830 pycom16g24110
rosa_chinensis	RchiOBHm_Chr5g0001791 RchiOBHm_Chr7g0210341
rosa_laevigata	RLG00000003045 RLG00000030973
rosa_multiflora	Rmu_co8137394.1_g000001 Rmu_sc0003807.1_g000002 Rmu_ssc0000237.1_g000012
rosa_roxburghii	Rroxscaffold_1G00071250 Rroxscaffold_1G00074540 Rroxscaffold_3G00248380
rosa_rugosa	Rorug04G0393100 Rorug04G0393200 Rorug04G0393300 Rorug07G0121200 Rorug07G0121200 Rorug07G0121300
rosa_samantha	Rh5AG014400 Rh5BG017800 Rh5CG015500 Rh5DG015900 Rh7AG253900 Rh7BG248800 Rh7CG270700 Rh7DG261400
rosa_wichuraiana	Rw5G001390 Rw7G021640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	897
AasI	GACNNNNNNGTC	1 cut(s)	1349
Acc36I	ACCTGC	1 cut(s)	1638
AccII	CGCG	1 cut(s)	149
AclWI	GGATC	5 cut(s)	331, 1143, 1307, 1431, 1444
AcoI	YGGCCR	1 cut(s)	166
AcsI	RAATTY	4 cut(s)	1022, 1356, 1556, 1775
AcuI	CTGAAG	2 cut(s)	107, 1131
AdeI	CACNNNGTG	1 cut(s)	925
AfaI	GTAC	5 cut(s)	774, 801, 947, 1181, 1914
AfiI	CCNNNNNNNGG	4 cut(s)	28, 230, 958, 1851
AflIII	ACRYGT	1 cut(s)	147
AgsI	TTSAA	6 cut(s)	410, 578, 814, 911, 1305, 1320
AhdI	GACNNNNNGTC	1 cut(s)	61
AjnI	CCWGG	1 cut(s)	901
Alw21I	GWGCWC	3 cut(s)	664, 1367, 1643
Alw26I	GTCTC	6 cut(s)	405, 559, 604, 970, 1026, 1712
Alw44I	GTGCAC	3 cut(s)	660, 1363, 1639
AlwI	GGATC	5 cut(s)	331, 1143, 1307, 1431, 1444
AoxI	GGCC	3 cut(s)	166, 904, 1651
ApaLI	GTGCAC	3 cut(s)	660, 1363, 1639
ApeKI	GCWGC	5 cut(s)	186, 433, 754, 1513, 1919
ApoI	RAATTY	4 cut(s)	1022, 1356, 1556, 1775
ArsI	GACNNNNNNTTYG	2 cut(s)	995, 1027
Asp700I	GAANNNNTTC	1 cut(s)	1383
AspLEI	GCGC	2 cut(s)	508, 679
AspS9I	GGNCC	2 cut(s)	11, 318
AsuC2I	CCSGG	1 cut(s)	1434
AsuHPI	GGTGA	5 cut(s)	148, 235, 638, 995, 1349
AvaII	GGWCC	2 cut(s)	11, 318
BaeGI	GKGCMC	3 cut(s)	664, 1367, 1643
BamHI	GGATCC	1 cut(s)	1436
BbsI	GAAGAC	2 cut(s)	918, 1818
Bbv12I	GWGCWC	3 cut(s)	664, 1367, 1643
BbvI	GCAGC	4 cut(s)	173, 420, 766, 1500
BccI	CCATC	3 cut(s)	304, 1252, 1811
BceAI	ACGGC	5 cut(s)	90, 313, 1618, 1829, 1896
BciT130I	CCWGG	1 cut(s)	903
BclI	TGATCA	1 cut(s)	631
BcnI	CCSGG	1 cut(s)	1434
BcoDI	GTCTC	6 cut(s)	405, 559, 604, 970, 1026, 1712
BfaI	CTAG	2 cut(s)	500, 1200
BfmI	CTRYAG	2 cut(s)	655, 1464
BfoI	RGCGCY	1 cut(s)	509
BfuAI	ACCTGC	1 cut(s)	1638
BmcAI	AGTACT	1 cut(s)	774
Bme1390I	CCNGG	2 cut(s)	903, 1434
Bme18I	GGWCC	2 cut(s)	11, 318
BmeRI	GACNNNNNGTC	1 cut(s)	61
BmgT120I	GGNCC	2 cut(s)	11, 318
BmiI	GGNNCC	2 cut(s)	96, 1438
BmrFI	CCNGG	2 cut(s)	903, 1434
BmsI	GCATC	3 cut(s)	346, 1080, 1595
BpiI	GAAGAC	2 cut(s)	918, 1818
BplI	GAGNNNNNCTC	4 cut(s)	280, 312, 1076, 1108
BpmI	CTGGAG	2 cut(s)	59, 1353
BpuEI	CTTGAG	2 cut(s)	1186, 1513
BpuMI	CCSGG	1 cut(s)	1434
BsaAI	YACGTR	1 cut(s)	1644
BsaBI	GATNNNNATC	1 cut(s)	897
BsaJI	CCNNGG	2 cut(s)	27, 1092
BsaWI	WCCGGW	1 cut(s)	320
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 230, 958, 1851
Bse3DI	GCAATG	4 cut(s)	478, 649, 1601, 1701
Bse8I	GATNNNNATC	1 cut(s)	897
BseBI	CCWGG	1 cut(s)	903
BseDI	CCNNGG	2 cut(s)	27, 1092
BseGI	GGATG	4 cut(s)	315, 1240, 1586, 1621
BseJI	GATNNNNATC	1 cut(s)	897
BseLI	CCNNNNNNNGG	4 cut(s)	28, 230, 958, 1851
BseMI	GCAATG	4 cut(s)	478, 649, 1601, 1701
BseMII	CTCAG	3 cut(s)	435, 605, 965
BseRI	GAGGAG	1 cut(s)	1283
BseSI	GKGCMC	3 cut(s)	664, 1367, 1643
BseXI	GCAGC	4 cut(s)	173, 420, 766, 1500
BseYI	CCCAGC	2 cut(s)	248, 1055
BsgI	GTGCAG	1 cut(s)	1842
Bsh1236I	CGCG	1 cut(s)	149
Bsh1285I	CGRYCG	1 cut(s)	27
BshFI	GGCC	3 cut(s)	168, 906, 1653
BsiEI	CGRYCG	1 cut(s)	27
BsiHKAI	GWGCWC	3 cut(s)	664, 1367, 1643
BsiSI	CCGG	3 cut(s)	101, 321, 1434
BslFI	GGGAC	1 cut(s)	158
BslI	CCNNNNNNNGG	4 cut(s)	28, 230, 958, 1851
BsmAI	GTCTC	6 cut(s)	405, 559, 604, 970, 1026, 1712
BsmBI	CGTCTC	2 cut(s)	559, 1026
BsmFI	GGGAC	1 cut(s)	158
BsmI	GAATGC	1 cut(s)	624
BsnI	GGCC	3 cut(s)	168, 906, 1653
Bsp1286I	GDGCHC	3 cut(s)	664, 1367, 1643
Bsp143I	GATC	9 cut(s)	323, 459, 526, 631, 1027, 1148, 1312, 1436, 1468
BspANI	GGCC	3 cut(s)	168, 906, 1653
BspCNI	CTCAG	3 cut(s)	436, 606, 966
BspFNI	CGCG	1 cut(s)	149
BspLI	GGNNCC	2 cut(s)	96, 1438
BspMAI	CTGCAG	1 cut(s)	1468
BspMI	ACCTGC	1 cut(s)	1638
BspPI	GGATC	5 cut(s)	331, 1143, 1307, 1431, 1444
BsrDI	GCAATG	4 cut(s)	478, 649, 1601, 1701
BssECI	CCNNGG	2 cut(s)	27, 1092
BssMI	GATC	9 cut(s)	323, 459, 526, 631, 1027, 1148, 1312, 1436, 1468
Bst2UI	CCWGG	1 cut(s)	903
Bst6I	CTCTTC	6 cut(s)	405, 408, 413, 785, 1128, 1850
BstAPI	GCANNNNNTGC	1 cut(s)	352
BstBAI	YACGTR	1 cut(s)	1644
BstC8I	GCNNGC	6 cut(s)	163, 555, 675, 1284, 1529, 1708
BstDEI	CTNAG	5 cut(s)	444, 485, 614, 974, 1157
BstDSI	CCRYGG	1 cut(s)	27
BstF5I	GGATG	4 cut(s)	315, 1240, 1586, 1621
BstFNI	CGCG	1 cut(s)	149
BstH2I	RGCGCY	1 cut(s)	509
BstHHI	GCGC	2 cut(s)	508, 679
BstKTI	GATC	9 cut(s)	326, 462, 529, 634, 1030, 1151, 1315, 1439, 1471
BstMAI	GTCTC	6 cut(s)	405, 559, 604, 970, 1026, 1712
BstMBI	GATC	9 cut(s)	323, 459, 526, 631, 1027, 1148, 1312, 1436, 1468
BstMCI	CGRYCG	1 cut(s)	27
BstNI	CCWGG	1 cut(s)	903
BstNSI	RCATGY	2 cut(s)	553, 1520
BstSCI	CCNGG	2 cut(s)	901, 1432
BstSFI	CTRYAG	2 cut(s)	655, 1464
BstSLI	GKGCMC	3 cut(s)	664, 1367, 1643
BstUI	CGCG	1 cut(s)	149
BstV1I	GCAGC	4 cut(s)	173, 420, 766, 1500
BstV2I	GAAGAC	2 cut(s)	918, 1818
BstX2I	RGATCY	1 cut(s)	1436
BstYI	RGATCY	1 cut(s)	1436
BsuRI	GGCC	3 cut(s)	168, 906, 1653
BtgI	CCRYGG	1 cut(s)	27
BtsCI	GGATG	4 cut(s)	315, 1240, 1586, 1621
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	5 cut(s)	156, 612, 1120, 1590, 1846
BveI	ACCTGC	1 cut(s)	1638
Cac8I	GCNNGC	6 cut(s)	163, 555, 675, 1284, 1529, 1708
CfoI	GCGC	2 cut(s)	508, 679
Cfr13I	GGNCC	2 cut(s)	11, 318
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	5 cut(s)	773, 800, 946, 1180, 1913
CviAII	CATG	8 cut(s)	356, 454, 463, 550, 1274, 1399, 1517, 1657
CviQI	GTAC	5 cut(s)	773, 800, 946, 1180, 1913
DdeI	CTNAG	5 cut(s)	444, 485, 614, 974, 1157
DpnI	GATC	9 cut(s)	325, 461, 528, 633, 1029, 1150, 1314, 1438, 1470
DpnII	GATC	9 cut(s)	323, 459, 526, 631, 1027, 1148, 1312, 1436, 1468
DraI	TTTAAA	1 cut(s)	1794
DraIII	CACNNNGTG	1 cut(s)	925
DrdI	GACNNNNNNGTC	1 cut(s)	1349
DriI	GACNNNNNGTC	1 cut(s)	61
DseDI	GACNNNNNNGTC	1 cut(s)	1349
EaeI	YGGCCR	1 cut(s)	166
Eam1104I	CTCTTC	6 cut(s)	405, 408, 413, 785, 1128, 1850
Eam1105I	GACNNNNNGTC	1 cut(s)	61
EarI	CTCTTC	6 cut(s)	405, 408, 413, 785, 1128, 1850
EciI	GGCGGA	3 cut(s)	68, 83, 87
Eco147I	AGGCCT	1 cut(s)	906
Eco32I	GATATC	2 cut(s)	1117, 1140
Eco47I	GGWCC	2 cut(s)	11, 318
Eco57I	CTGAAG	2 cut(s)	107, 1131
EcoRII	CCWGG	1 cut(s)	901
EcoRV	GATATC	2 cut(s)	1117, 1140
EcoT22I	ATGCAT	1 cut(s)	131
Esp3I	CGTCTC	2 cut(s)	559, 1026
FaeI	CATG	8 cut(s)	359, 457, 466, 553, 1277, 1402, 1520, 1660
FalI	AAGNNNNNCTT	2 cut(s)	513, 545
FaqI	GGGAC	1 cut(s)	158
FatI	CATG	8 cut(s)	355, 453, 462, 549, 1273, 1398, 1516, 1656
FauI	CCCGC	1 cut(s)	1520
FauNDI	CATATG	1 cut(s)	874
FbaI	TGATCA	1 cut(s)	631
FokI	GGATG	4 cut(s)	322, 1247, 1573, 1628
FspBI	CTAG	2 cut(s)	500, 1200
GlaI	GCGC	2 cut(s)	507, 678
GsaI	CCCAGC	2 cut(s)	252, 1059
GsuI	CTGGAG	2 cut(s)	59, 1353
HaeII	RGCGCY	1 cut(s)	509
HaeIII	GGCC	3 cut(s)	168, 906, 1653
HapII	CCGG	3 cut(s)	101, 321, 1434
HgaI	GACGC	1 cut(s)	155
HhaI	GCGC	2 cut(s)	508, 679
Hin1II	CATG	8 cut(s)	359, 457, 466, 553, 1277, 1402, 1520, 1660
Hin6I	GCGC	2 cut(s)	506, 677
HinP1I	GCGC	2 cut(s)	506, 677
HincII	GTYRAC	1 cut(s)	236
HindII	GTYRAC	1 cut(s)	236
HinfI	GANTC	7 cut(s)	34, 56, 207, 440, 446, 869, 1749
HpaII	CCGG	3 cut(s)	101, 321, 1434
HphI	GGTGA	5 cut(s)	148, 235, 638, 995, 1349
Hpy166II	GTNNAC	6 cut(s)	236, 662, 1182, 1365, 1641, 1690
Hpy188I	TCNGA	9 cut(s)	87, 123, 206, 309, 445, 970, 1251, 1389, 1789
Hpy188III	TCNNGA	8 cut(s)	22, 38, 211, 407, 530, 1031, 1332, 1373
Hpy8I	GTNNAC	6 cut(s)	236, 662, 1182, 1365, 1641, 1690
Hpy99I	CGWCG	1 cut(s)	67
HpyAV	CCTTC	5 cut(s)	82, 383, 483, 1326, 1396
HpyCH4IV	ACGT	2 cut(s)	568, 1643
HpyF3I	CTNAG	5 cut(s)	444, 485, 614, 974, 1157
HpySE526I	ACGT	2 cut(s)	568, 1643
Hsp92II	CATG	8 cut(s)	359, 457, 466, 553, 1277, 1402, 1520, 1660
HspAI	GCGC	2 cut(s)	506, 677
Ksp22I	TGATCA	1 cut(s)	631
Kzo9I	GATC	9 cut(s)	323, 459, 526, 631, 1027, 1148, 1312, 1436, 1468
LmnI	GCTCC	5 cut(s)	40, 100, 334, 430, 1270
Lsp1109I	GCAGC	4 cut(s)	173, 420, 766, 1500
LweI	GCATC	3 cut(s)	346, 1080, 1595
MaeI	CTAG	2 cut(s)	500, 1200
MaeII	ACGT	2 cut(s)	568, 1643
MaeIII	GTNAC	6 cut(s)	193, 760, 830, 1205, 1222, 1237
MalI	GATC	9 cut(s)	325, 461, 528, 633, 1029, 1150, 1314, 1438, 1470
MboI	GATC	9 cut(s)	323, 459, 526, 631, 1027, 1148, 1312, 1436, 1468
MfeI	CAATTG	1 cut(s)	1040
MflI	RGATCY	1 cut(s)	1436
MhlI	GDGCHC	3 cut(s)	664, 1367, 1643
MluI	ACGCGT	1 cut(s)	147
MlyI	GAGTC	3 cut(s)	50, 449, 455
MmeI	TCCRAC	3 cut(s)	287, 312, 1832
Mph1103I	ATGCAT	1 cut(s)	131
MroXI	GAANNNNTTC	1 cut(s)	1383
MseI	TTAA	4 cut(s)	540, 1101, 1793, 1902
MslI	CAYNNNNRTG	4 cut(s)	134, 1397, 1485, 1659
MspA1I	CMGCKG	2 cut(s)	186, 1513
MspI	CCGG	3 cut(s)	101, 321, 1434
MspR9I	CCNGG	2 cut(s)	903, 1434
MunI	CAATTG	1 cut(s)	1040
Mva1269I	GAATGC	1 cut(s)	624
MvaI	CCWGG	1 cut(s)	903
MvnI	CGCG	1 cut(s)	149
NciI	CCSGG	1 cut(s)	1434
NdeI	CATATG	1 cut(s)	874
NdeII	GATC	9 cut(s)	323, 459, 526, 631, 1027, 1148, 1312, 1436, 1468
NlaIII	CATG	8 cut(s)	359, 457, 466, 553, 1277, 1402, 1520, 1660
NlaIV	GGNNCC	2 cut(s)	96, 1438
NmuCI	GTSAC	2 cut(s)	193, 1205
NsiI	ATGCAT	1 cut(s)	131
NspI	RCATGY	2 cut(s)	553, 1520
PceI	AGGCCT	1 cut(s)	906
PcsI	WCGNNNNNNNCGW	2 cut(s)	1731, 1812
PctI	GAATGC	1 cut(s)	624
PdmI	GAANNNNTTC	1 cut(s)	1383
PfeI	GAWTC	4 cut(s)	34, 207, 869, 1749
PflFI	GACNNNGTC	1 cut(s)	650
PfoI	TCCNGGA	1 cut(s)	1432
PleI	GAGTC	3 cut(s)	50, 448, 454
PpsI	GAGTC	3 cut(s)	50, 448, 454
Ppu21I	YACGTR	1 cut(s)	1644
PsiI	TTATAA	1 cut(s)	897
Psp6I	CCWGG	1 cut(s)	901
PspFI	CCCAGC	2 cut(s)	248, 1055
PspGI	CCWGG	1 cut(s)	901
PspN4I	GGNNCC	2 cut(s)	96, 1438
PspPI	GGNCC	2 cut(s)	11, 318
PstI	CTGCAG	1 cut(s)	1468
PsuI	RGATCY	1 cut(s)	1436
PsyI	GACNNNGTC	1 cut(s)	650
PvuII	CAGCTG	1 cut(s)	186
RsaI	GTAC	5 cut(s)	774, 801, 947, 1181, 1914
RsaNI	GTAC	5 cut(s)	773, 800, 946, 1180, 1913
RseI	CAYNNNNRTG	4 cut(s)	134, 1397, 1485, 1659
SaqAI	TTAA	4 cut(s)	540, 1101, 1793, 1902
Sau3AI	GATC	9 cut(s)	323, 459, 526, 631, 1027, 1148, 1312, 1436, 1468
Sau96I	GGNCC	2 cut(s)	11, 318
ScaI	AGTACT	1 cut(s)	774
SchI	GAGTC	3 cut(s)	50, 449, 455
ScrFI	CCNGG	2 cut(s)	903, 1434
SduI	GDGCHC	3 cut(s)	664, 1367, 1643
SfaNI	GCATC	3 cut(s)	346, 1080, 1595
SfcI	CTRYAG	2 cut(s)	655, 1464
SinI	GGWCC	2 cut(s)	11, 318
SmiMI	CAYNNNNRTG	4 cut(s)	134, 1397, 1485, 1659
SmlI	CTYRAG	2 cut(s)	1165, 1492
SmoI	CTYRAG	2 cut(s)	1165, 1492
SseBI	AGGCCT	1 cut(s)	906
SspI	AATATT	1 cut(s)	1006
SspMI	CTAG	2 cut(s)	500, 1200
StuI	AGGCCT	1 cut(s)	906
StyD4I	CCNGG	2 cut(s)	901, 1432
TaiI	ACGT	2 cut(s)	571, 1646
TaqI	TCGA	6 cut(s)	276, 449, 1013, 1030, 1131, 1395
TatI	WGTACW	5 cut(s)	772, 799, 945, 1179, 1912
TauI	GCSGC	5 cut(s)	53, 80, 168, 346, 847
TfiI	GAWTC	4 cut(s)	34, 207, 869, 1749
Tru1I	TTAA	4 cut(s)	540, 1101, 1793, 1902
Tru9I	TTAA	4 cut(s)	540, 1101, 1793, 1902
TscAI	CASTG	5 cut(s)	163, 612, 1127, 1597, 1846
TseFI	GTSAC	2 cut(s)	193, 1205
TseI	GCWGC	5 cut(s)	186, 433, 754, 1513, 1919
Tsp45I	GTSAC	2 cut(s)	193, 1205
TspDTI	ATGAA	7 cut(s)	861, 1119, 1290, 1415, 1469, 1587, 1673
TspRI	CASTG	5 cut(s)	163, 612, 1127, 1597, 1846
Tth111I	GACNNNGTC	1 cut(s)	650
VneI	GTGCAC	3 cut(s)	660, 1363, 1639
VpaK11BI	GGWCC	2 cut(s)	11, 318
XapI	RAATTY	4 cut(s)	1022, 1356, 1556, 1775
XceI	RCATGY	2 cut(s)	553, 1520
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1447
XmnI	GAANNNNTTC	1 cut(s)	1383
XspI	CTAG	2 cut(s)	500, 1200
ZrmI	AGTACT	1 cut(s)	774
Zsp2I	ATGCAT	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.