Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001361

Physical Location & Seq

Genomic Coordinates Forward (+)

55987423 .. 55992512

Gene Structure 5090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0393200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1884 bp

ATGAGGAAGCATGGATGGCAGCTCCCTTATCATCCTCTTCAGGTGGTGGCTGTAGCTGTGTTTCTGGCTTTGGCCTTTGCTTTTTATGTCTTCTTTGCTCCTTTTGTCGGGAAGAAGATTTTCCAGTATATTGTGATCGGCCTCTACACTCCTCTTATTACATGTGTCTTCAGCCTATATATATGGTGTGCAGCTGCTGATCCCGCAGATCCAGGAGTTTTTAGGTCAAAGAAATATCTCAATATTCCAGCCAATGAAAAGCATCCTAGAAGCAAAGATTCTAAACTTTGTGGGGAATCAACATCATCGATGCATGAAGCTAATGATGTGACAGTTGGAGGAAGACCTCTGGATAAGGATGCACTTGGCAAACTTGGTACTTCAAAAGCGTCCAACAGTGATATTGAAGTGAAGGGTGCTTCCTCAGAAAATTCGTCTTGCTTAATGTTGCTTTTCTCTCCATGTGCTTATATCTGTGATTGCTCCGGATCAAGTGAAGAATCTTCATTGCACCAAATGAGTGAAGAAGGCATGTTCTATTGCAGTTTGTGTGAAGTTGAGGTTTTCAAGTACAGCAAGCACTGCAGGGTTTGTGACAAATGTGTTGACAGTTTTGATCATCACTGCAGGTGGCTCAACAACTGTATTGGAAAAAAGAATTATCGACAATTTTTCACCCTTATGGTTACTTCTCTCCTCTTGCTAATCTTACAATGGTCAACTGGAATCTTTGTGCTTATCTGCTGTATTATTGAGAGGAAGCACATCTCTGTGGATATATCTACAAAGTTGGGAAGCAGCTTTTCTTTGGTGCCTTTCGTCATTGTCGTGGCAGTGTGCACCCTTTTGGCTATGATTGCAACCCTGCCACTTGCTCAACTTTTCTTTTTCCACATCCTCCTTATAAAGAAGGGAATCAGCACATATGATTACATCATTGCTTTAAGGGAGCAGGAGCAAGAGCAACAAGGAGTTGGGGGTCAGCACAGTCCCCAAATGTCTCCTGCAAGCTCACTTACTGGATTAAGCAGTGCAAGCTCCTTTACTACCTTTCACCGAAATGCATGGTGTACACCTCCGCGACTGTTCCTTGAAGATCAGTTTGATGTTGTACCCCCTGAGACTGGATCTGTTAGCTCATACGGAAAAAAGATGGTGGGAGAGGAACCAACTAAGAAGAAGAATACTGGAACGGTAAAGATCAGTCCGTGGACTCTGGCAAGATTAAATGCAGAAGAGGTATCAAAAGCTGCTGCAGAGGCCAGAAAGAAGTCTAAGATCCTGCAGCCTGTGAGACGTGATGCTCCTTTTCGACTGGAAAGAGACAATAGCTTTGGCAGCAGTGGCCGCCGGATGGTTCCAAAGCCTGACAATAACAGAAGACGAACTACCAAGCGGGTGCGCCTCCCAGCTGACCTTCCTGTGGAGGCTTTAACAAAGGGCACAGCTAAAGCTGTTGATAAAGGTTTTACTGAGACATCGACTAGTTTGGCCCCTCTTCAGCTTGAAGCTCGGAGTGCTTTCCAAACAAGCCGAGCTATGTCAAGCTCCATAGGGATAGCAGCTTCTTCTCCTGAGAGCAGTTTAGACTCACCTGATATCCATCCCTTCCGGGTATCCTCATCAGGAGCAGAAGAGGCAAGGCGGCTAACAGGTCTGCCTGCCGCTATTGCAGCTGCTCAGAAGGGAATCCCACTGTCAAGGTCAACTAGTGATGGTGGATATGACGCATCTGGTGGAGAAGATAGTGACAGGGTTCCTCCCAGAAATGTTGAAAGATCAACAGCAAACTGGAGTAGCCTTCTCTTTGGCTCTGAACAGGATGAGAGGGTTGTCAAACAGAAAGCAGCATCTTCTAGCCTGGCTAACAGTAGAAAGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000152 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009639 GO:0009640 GO:0009641 GO:0009642 GO:0009646 GO:0009647 GO:0009648 GO:0009649 GO:0009791 GO:0009812 GO:0009987 GO:0010119 GO:0010228 GO:0016567 GO:0016604 GO:0016740 GO:0019538 GO:0019787 GO:0022414 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0036211 GO:0042440 GO:0042752 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046283 GO:0046483 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080008 GO:0090304 GO:0140096 GO:1901360 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04115 ko04120 ko04712 map04115 map04120 map04712

Pfam Domains

Protein Families

WD40 zf-C3HC4_2

Protein Analysis

627

Amino Acids

68.74

Weight (kDa)

9.0

Isoelectric Point (pI)

56.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHHC	PF01529	180 - 312	7.6e-28	DHHC palmitoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32950 AT2G32950
fragaria_vesca	FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_5g22570 FvH4_5g22570
malus_domestica	MD06G1037700.v1.1 MD10G1328500.v1.1 MD15G1405100.v1.1 MD15G1405200.v1.1 MD16G1272200.v1.1
prunus_persica	Prupe.4G013500_v2.0.a1 Prupe.5G031300_v2.0.a1 Prupe.5G031300_v2.0.a1 Prupe.5G031300_v2.0.a1 Prupe.5G031300_v2.0.a1
pyrus_communis	pycom10g27830 pycom16g24110
rosa_chinensis	RchiOBHm_Chr5g0001791 RchiOBHm_Chr7g0210341
rosa_laevigata	RLG00000003045 RLG00000030973
rosa_multiflora	Rmu_co8137394.1_g000001 Rmu_sc0003807.1_g000002 Rmu_ssc0000237.1_g000012
rosa_roxburghii	Rroxscaffold_1G00071250 Rroxscaffold_1G00074540 Rroxscaffold_3G00248380
rosa_rugosa	Rorug04G0393100 Rorug04G0393200 Rorug04G0393300 Rorug07G0121200 Rorug07G0121200 Rorug07G0121300
rosa_samantha	Rh5AG014400 Rh5BG017800 Rh5CG015500 Rh5DG015900 Rh7AG253900 Rh7BG248800 Rh7CG270700 Rh7DG261400
rosa_wichuraiana	Rw5G001390 Rw7G021640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	905
AarI	CACCTGC	1 cut(s)	618
Acc36I	ACCTGC	1 cut(s)	618
AccB1I	GGYRCC	1 cut(s)	811
AccII	CGCG	1 cut(s)	1081
AccIII	TCCGGA	1 cut(s)	485
AciI	CCGC	6 cut(s)	204, 1079, 1348, 1396, 1645, 1665
AclWI	GGATC	5 cut(s)	194, 203, 496, 1135, 1273
AcoI	YGGCCR	1 cut(s)	1345
AcsI	RAATTY	1 cut(s)	430
AcuI	CTGAAG	3 cut(s)	23, 154, 1484
AfaI	GTAC	4 cut(s)	379, 572, 1072, 1113
AfiI	CCNNNNNNNGG	4 cut(s)	107, 1124, 1354, 1423
AflIII	ACRYGT	1 cut(s)	161
AgsI	TTSAA	6 cut(s)	384, 407, 568, 1094, 1508, 1775
AhlI	ACTAGT	2 cut(s)	1484, 1709
AjiI	CACGTC	1 cut(s)	1298
AjnI	CCWGG	2 cut(s)	211, 1860
Alw21I	GWGCWC	1 cut(s)	842
Alw26I	GTCTC	5 cut(s)	1005, 1115, 1288, 1317, 1469
Alw44I	GTGCAC	1 cut(s)	838
AlwI	GGATC	5 cut(s)	194, 203, 496, 1135, 1273
AlwNI	CAGNNNCTG	1 cut(s)	197
Aor13HI	TCCGGA	1 cut(s)	485
AoxI	GGCC	5 cut(s)	72, 139, 1260, 1345, 1491
ApaLI	GTGCAC	1 cut(s)	838
ApoI	RAATTY	1 cut(s)	430
ArsI	GACNNNNNNTTYG	2 cut(s)	1316, 1348
Asp700I	GAANNNNTTC	1 cut(s)	119
AspLEI	GCGC	1 cut(s)	1404
AspS9I	GGNCC	1 cut(s)	1492
AsuC2I	CCSGG	1 cut(s)	1613
AsuHPI	GGTGA	3 cut(s)	667, 1046, 1584
BaeGI	GKGCMC	2 cut(s)	842, 1445
BanI	GGYRCC	1 cut(s)	811
BarI	GAAGNNNNNNTAC	2 cut(s)	1372, 1404
BbsI	GAAGAC	4 cut(s)	82, 160, 349, 1387
Bbv12I	GWGCWC	1 cut(s)	842
BccI	CCATC	5 cut(s)	9, 1147, 1348, 1611, 1709
BciT130I	CCWGG	2 cut(s)	213, 1862
BciVI	GTATCC	1 cut(s)	1627
BclI	TGATCA	1 cut(s)	616
BcnI	CCSGG	1 cut(s)	1613
BcoDI	GTCTC	5 cut(s)	1005, 1115, 1288, 1317, 1469
BcuI	ACTAGT	2 cut(s)	1484, 1709
BfaI	CTAG	4 cut(s)	267, 1485, 1710, 1857
BfmI	CTRYAG	5 cut(s)	51, 583, 625, 1254, 1283
BfuAI	ACCTGC	1 cut(s)	618
BfuI	GTATCC	1 cut(s)	1627
Bme1390I	CCNGG	3 cut(s)	213, 1613, 1862
BmgBI	CACGTC	1 cut(s)	1298
BmgT120I	GGNCC	1 cut(s)	1492
BmiI	GGNNCC	5 cut(s)	813, 1167, 1359, 1494, 1758
BmrFI	CCNGG	3 cut(s)	213, 1613, 1862
BmsI	GCATC	6 cut(s)	271, 300, 349, 1291, 1739, 1859
BpiI	GAAGAC	4 cut(s)	82, 160, 349, 1387
BpmI	CTGGAG	1 cut(s)	1813
BpuMI	CCSGG	1 cut(s)	1613
Bsa29I	ATCGAT	1 cut(s)	308
BsaBI	GATNNNNATC	1 cut(s)	1602
BsaJI	CCNNGG	1 cut(s)	1208
BsaWI	WCCGGW	1 cut(s)	485
Bsc4I	CCNNNNNNNGG	4 cut(s)	107, 1124, 1354, 1423
Bse1I	ACTGG	7 cut(s)	124, 727, 1024, 1129, 1192, 1320, 1796
Bse3DI	GCAATG	2 cut(s)	506, 936
Bse8I	GATNNNNATC	1 cut(s)	1602
BseAI	TCCGGA	1 cut(s)	485
BseBI	CCWGG	2 cut(s)	213, 1862
BseCI	ATCGAT	1 cut(s)	308
BseDI	CCNNGG	1 cut(s)	1208
BseGI	GGATG	8 cut(s)	20, 31, 262, 364, 894, 1359, 1603, 1828
BseJI	GATNNNNATC	1 cut(s)	1602
BseLI	CCNNNNNNNGG	4 cut(s)	107, 1124, 1354, 1423
BseMI	GCAATG	2 cut(s)	506, 936
BseMII	CTCAG	5 cut(s)	438, 1110, 1464, 1566, 1694
BseNI	ACTGG	7 cut(s)	124, 727, 1024, 1129, 1192, 1320, 1796
BseRI	GAGGAG	2 cut(s)	141, 686
BseSI	GKGCMC	2 cut(s)	842, 1445
BseYI	CCCAGC	1 cut(s)	1408
BsgI	GTGCAG	1 cut(s)	210
Bsh1236I	CGCG	1 cut(s)	1081
BshFI	GGCC	5 cut(s)	74, 141, 1262, 1347, 1493
BshNI	GGYRCC	1 cut(s)	811
BshVI	ATCGAT	1 cut(s)	308
BsiHKAI	GWGCWC	1 cut(s)	842
BsiSI	CCGG	3 cut(s)	486, 1351, 1612
BslFI	GGGAC	1 cut(s)	975
BslI	CCNNNNNNNGG	4 cut(s)	107, 1124, 1354, 1423
BsmAI	GTCTC	5 cut(s)	1005, 1115, 1288, 1317, 1469
BsmBI	CGTCTC	1 cut(s)	1288
BsmFI	GGGAC	1 cut(s)	975
BsnI	GGCC	5 cut(s)	74, 141, 1262, 1347, 1493
Bsp1286I	GDGCHC	2 cut(s)	842, 1445
Bsp13I	TCCGGA	1 cut(s)	485
Bsp1407I	TGTACA	1 cut(s)	1070
BspACI	CCGC	6 cut(s)	204, 1079, 1348, 1396, 1645, 1665
BspANI	GGCC	5 cut(s)	74, 141, 1262, 1347, 1493
BspCNI	CTCAG	5 cut(s)	437, 1111, 1465, 1567, 1693
BspDI	ATCGAT	1 cut(s)	308
BspEI	TCCGGA	1 cut(s)	485
BspFNI	CGCG	1 cut(s)	1081
BspLI	GGNNCC	5 cut(s)	813, 1167, 1359, 1494, 1758
BspMAI	CTGCAG	4 cut(s)	587, 629, 1258, 1287
BspMI	ACCTGC	1 cut(s)	618
BspPI	GGATC	5 cut(s)	194, 203, 496, 1135, 1273
BspT107I	GGYRCC	1 cut(s)	811
BsrDI	GCAATG	2 cut(s)	506, 936
BsrGI	TGTACA	1 cut(s)	1070
BsrI	ACTGG	7 cut(s)	124, 727, 1024, 1129, 1192, 1320, 1796
BssECI	CCNNGG	1 cut(s)	1208
Bst2UI	CCWGG	2 cut(s)	213, 1862
Bst4CI	ACNGT	9 cut(s)	334, 398, 611, 644, 989, 1086, 1195, 1698, 1871
Bst6I	CTCTTC	4 cut(s)	42, 1230, 1503, 1629
BstAPI	GCANNNNNTGC	1 cut(s)	582
BstAUI	TGTACA	1 cut(s)	1070
BstC8I	GCNNGC	4 cut(s)	578, 1009, 1036, 1662
BstDEI	CTNAG	7 cut(s)	424, 1119, 1173, 1275, 1473, 1575, 1680
BstDSI	CCRYGG	1 cut(s)	1208
BstF5I	GGATG	8 cut(s)	20, 31, 262, 364, 894, 1359, 1603, 1828
BstFNI	CGCG	1 cut(s)	1081
BstHHI	GCGC	1 cut(s)	1404
BstMAI	GTCTC	5 cut(s)	1005, 1115, 1288, 1317, 1469
BstNI	CCWGG	2 cut(s)	213, 1862
BstNSI	RCATGY	2 cut(s)	165, 535
BstSCI	CCNGG	3 cut(s)	211, 1611, 1860
BstSFI	CTRYAG	5 cut(s)	51, 583, 625, 1254, 1283
BstSLI	GKGCMC	2 cut(s)	842, 1445
BstUI	CGCG	1 cut(s)	1081
BstV2I	GAAGAC	4 cut(s)	82, 160, 349, 1387
BstX2I	RGATCY	3 cut(s)	208, 1127, 1278
BstYI	RGATCY	3 cut(s)	208, 1127, 1278
Bsu15I	ATCGAT	1 cut(s)	308
BsuI	GTATCC	1 cut(s)	1627
BsuRI	GGCC	5 cut(s)	74, 141, 1262, 1347, 1493
BsuTUI	ATCGAT	1 cut(s)	308
BtgI	CCRYGG	1 cut(s)	1208
BtrI	CACGTC	1 cut(s)	1298
BtsCI	GGATG	8 cut(s)	20, 31, 262, 364, 894, 1359, 1603, 1828
BtsI	GCAGTG	5 cut(s)	580, 622, 840, 1036, 1348
BtsIMutI	CAGTG	7 cut(s)	403, 580, 622, 840, 1036, 1348, 1694
BveI	ACCTGC	1 cut(s)	618
Cac8I	GCNNGC	4 cut(s)	578, 1009, 1036, 1662
CaiI	CAGNNNCTG	1 cut(s)	197
CfoI	GCGC	1 cut(s)	1404
Cfr13I	GGNCC	1 cut(s)	1492
ClaI	ATCGAT	1 cut(s)	308
CseI	GACGC	2 cut(s)	378, 1736
Csp6I	GTAC	4 cut(s)	378, 571, 1071, 1112
CviAII	CATG	6 cut(s)	11, 162, 314, 462, 532, 1065
CviQI	GTAC	4 cut(s)	378, 571, 1071, 1112
DdeI	CTNAG	7 cut(s)	424, 1119, 1173, 1275, 1473, 1575, 1680
EaeI	YGGCCR	1 cut(s)	1345
Eam1104I	CTCTTC	4 cut(s)	42, 1230, 1503, 1629
EarI	CTCTTC	4 cut(s)	42, 1230, 1503, 1629
Eco32I	GATATC	1 cut(s)	1600
Eco57I	CTGAAG	3 cut(s)	23, 154, 1484
EcoRII	CCWGG	2 cut(s)	211, 1860
EcoRV	GATATC	1 cut(s)	1600
EcoT22I	ATGCAT	2 cut(s)	315, 1066
Esp3I	CGTCTC	1 cut(s)	1288
FaeI	CATG	6 cut(s)	14, 165, 317, 465, 535, 1068
FaqI	GGGAC	1 cut(s)	975
FatI	CATG	6 cut(s)	10, 161, 313, 461, 531, 1064
FauI	CCCGC	2 cut(s)	211, 1389
FauNDI	CATATG	1 cut(s)	925
FbaI	TGATCA	1 cut(s)	616
FokI	GGATG	8 cut(s)	18, 27, 249, 371, 881, 1366, 1590, 1835
FspBI	CTAG	4 cut(s)	267, 1485, 1710, 1857
GlaI	GCGC	1 cut(s)	1403
GsaI	CCCAGC	1 cut(s)	1412
GsuI	CTGGAG	1 cut(s)	1813
HaeIII	GGCC	5 cut(s)	74, 141, 1262, 1347, 1493
HapII	CCGG	3 cut(s)	486, 1351, 1612
HgaI	GACGC	2 cut(s)	378, 1736
HhaI	GCGC	1 cut(s)	1404
Hin1II	CATG	6 cut(s)	14, 165, 317, 465, 535, 1068
Hin6I	GCGC	1 cut(s)	1402
HinP1I	GCGC	1 cut(s)	1402
HincII	GTYRAC	3 cut(s)	607, 720, 1707
HindII	GTYRAC	3 cut(s)	607, 720, 1707
HinfI	GANTC	8 cut(s)	278, 296, 500, 726, 915, 1213, 1589, 1689
HpaII	CCGG	3 cut(s)	486, 1351, 1612
HphI	GGTGA	3 cut(s)	667, 1046, 1584
Hpy166II	GTNNAC	7 cut(s)	607, 720, 840, 1071, 1073, 1212, 1707
Hpy188I	TCNGA	5 cut(s)	427, 1515, 1683, 1816, 1883
Hpy188III	TCNNGA	5 cut(s)	109, 350, 486, 1574, 1626
Hpy8I	GTNNAC	7 cut(s)	607, 720, 840, 1071, 1073, 1212, 1707
HpyAV	CCTTC	7 cut(s)	406, 521, 904, 1427, 1618, 1678, 1811
HpyCH4III	ACNGT	9 cut(s)	334, 398, 611, 644, 989, 1086, 1195, 1698, 1871
HpyCH4IV	ACGT	1 cut(s)	1297
HpyF3I	CTNAG	7 cut(s)	424, 1119, 1173, 1275, 1473, 1575, 1680
HpySE526I	ACGT	1 cut(s)	1297
Hsp92II	CATG	6 cut(s)	14, 165, 317, 465, 535, 1068
HspAI	GCGC	1 cut(s)	1402
Kpn2I	TCCGGA	1 cut(s)	485
Ksp22I	TGATCA	1 cut(s)	616
LmnI	GCTCC	9 cut(s)	27, 103, 488, 949, 955, 1043, 1309, 1553, 1628
LweI	GCATC	6 cut(s)	271, 300, 349, 1291, 1739, 1859
MaeI	CTAG	4 cut(s)	267, 1485, 1710, 1857
MaeII	ACGT	1 cut(s)	1297
MaeIII	GTNAC	4 cut(s)	328, 593, 685, 1748
MflI	RGATCY	3 cut(s)	208, 1127, 1278
MhlI	GDGCHC	2 cut(s)	842, 1445
MluCI	AATT	3 cut(s)	430, 658, 668
MlyI	GAGTC	2 cut(s)	1207, 1583
MmeI	TCCRAC	2 cut(s)	316, 417
Mph1103I	ATGCAT	2 cut(s)	315, 1066
MroI	TCCGGA	1 cut(s)	485
MroXI	GAANNNNTTC	1 cut(s)	119
MseI	TTAA	5 cut(s)	443, 944, 1025, 1226, 1433
MslI	CAYNNNNRTG	4 cut(s)	680, 770, 827, 1059
MspA1I	CMGCKG	3 cut(s)	194, 1412, 1676
MspI	CCGG	3 cut(s)	486, 1351, 1612
MspR9I	CCNGG	3 cut(s)	213, 1613, 1862
MvaI	CCWGG	2 cut(s)	213, 1862
MvnI	CGCG	1 cut(s)	1081
NciI	CCSGG	1 cut(s)	1613
NdeI	CATATG	1 cut(s)	925
NlaIII	CATG	6 cut(s)	14, 165, 317, 465, 535, 1068
NlaIV	GGNNCC	5 cut(s)	813, 1167, 1359, 1494, 1758
NmeAIII	GCCGAG	1 cut(s)	1559
NmuCI	GTSAC	3 cut(s)	328, 593, 1748
NsiI	ATGCAT	2 cut(s)	315, 1066
NspI	RCATGY	2 cut(s)	165, 535
PaqCI	CACCTGC	1 cut(s)	618
PciI	ACATGT	1 cut(s)	161
PcsI	WCGNNNNNNNCGW	1 cut(s)	825
PdmI	GAANNNNTTC	1 cut(s)	119
PfeI	GAWTC	6 cut(s)	278, 296, 500, 726, 915, 1689
PfoI	TCCNGGA	1 cut(s)	211
PleI	GAGTC	2 cut(s)	1207, 1583
PpsI	GAGTC	2 cut(s)	1207, 1583
PscI	ACATGT	1 cut(s)	161
PsiI	TTATAA	1 cut(s)	905
Psp6I	CCWGG	2 cut(s)	211, 1860
PspFI	CCCAGC	1 cut(s)	1408
PspGI	CCWGG	2 cut(s)	211, 1860
PspN4I	GGNNCC	5 cut(s)	813, 1167, 1359, 1494, 1758
PspPI	GGNCC	1 cut(s)	1492
PstI	CTGCAG	4 cut(s)	587, 629, 1258, 1287
PstNI	CAGNNNCTG	1 cut(s)	197
PsuI	RGATCY	3 cut(s)	208, 1127, 1278
PvuII	CAGCTG	3 cut(s)	194, 1412, 1676
RsaI	GTAC	4 cut(s)	379, 572, 1072, 1113
RsaNI	GTAC	4 cut(s)	378, 571, 1071, 1112
RseI	CAYNNNNRTG	4 cut(s)	680, 770, 827, 1059
SaqAI	TTAA	5 cut(s)	443, 944, 1025, 1226, 1433
Sau96I	GGNCC	1 cut(s)	1492
SchI	GAGTC	2 cut(s)	1207, 1583
ScrFI	CCNGG	3 cut(s)	213, 1613, 1862
SduI	GDGCHC	2 cut(s)	842, 1445
SfaNI	GCATC	6 cut(s)	271, 300, 349, 1291, 1739, 1859
SfcI	CTRYAG	5 cut(s)	51, 583, 625, 1254, 1283
SmiMI	CAYNNNNRTG	4 cut(s)	680, 770, 827, 1059
SpeI	ACTAGT	2 cut(s)	1484, 1709
Sse9I	AATT	3 cut(s)	430, 658, 668
SsiI	CCGC	6 cut(s)	204, 1079, 1348, 1396, 1645, 1665
SspI	AATATT	1 cut(s)	244
SspMI	CTAG	4 cut(s)	267, 1485, 1710, 1857
StyD4I	CCNGG	3 cut(s)	211, 1611, 1860
TaaI	ACNGT	9 cut(s)	334, 398, 611, 644, 989, 1086, 1195, 1698, 1871
TaiI	ACGT	1 cut(s)	1300
TaqI	TCGA	4 cut(s)	308, 664, 1312, 1481
TasI	AATT	3 cut(s)	430, 658, 668
TatI	WGTACW	2 cut(s)	570, 1070
TauI	GCSGC	3 cut(s)	1350, 1648, 1667
TfiI	GAWTC	6 cut(s)	278, 296, 500, 726, 915, 1689
Tru1I	TTAA	5 cut(s)	443, 944, 1025, 1226, 1433
Tru9I	TTAA	5 cut(s)	443, 944, 1025, 1226, 1433
TscAI	CASTG	7 cut(s)	403, 587, 629, 840, 1036, 1348, 1701
TseFI	GTSAC	3 cut(s)	328, 593, 1748
Tsp45I	GTSAC	3 cut(s)	328, 593, 1748
TspDTI	ATGAA	3 cut(s)	270, 330, 495
TspGWI	ACGGA	2 cut(s)	1158, 1197
TspRI	CASTG	7 cut(s)	403, 587, 629, 840, 1036, 1348, 1701
VneI	GTGCAC	1 cut(s)	838
XapI	RAATTY	1 cut(s)	430
XceI	RCATGY	2 cut(s)	165, 535
XmnI	GAANNNNTTC	1 cut(s)	119
XspI	CTAG	4 cut(s)	267, 1485, 1710, 1857
Zsp2I	ATGCAT	2 cut(s)	315, 1066

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.