Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001361

Physical Location & Seq

Genomic Coordinates Reverse (-)

55992713 .. 55994561

Gene Structure 1849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0393300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGCAACTCCGTCTCCACCCCTAAACCTCTGGACCTTCCTCACCGAATCGAAGCGCATCCTCACCGAATCGAAGCGCATCATCAACGCCCACTCCCGCCACTTCTTGGCCCTCTCCGTCGTCTTCCTCCTCCCCATCTCCTTCTCCTCCGTCGTCTACCCAACTCTCCACAACCTCATCGCCGATCGTATACCGCACAATTCCCAAAAATTCTTCTTAAGTATTGACCAACCCTCCTCCCTCCCCACCACCAAGACCCTACTCGTCGCTCTCGCTTTCGCCCTCTTCGTCTTCGTCCTCTCTCTCTTCGCTCTCGGCTCAATCACCTACAGCGTCTTCCACGGCTTCTATGGCCGCCCGGTCAAGTTCATATCCGCTGTCCGATCCGTCAAGGTTTCGTTCTGGCCAGTTTTGGGTACTGTTCTTGCTTCCCACATCGTGTTTTTGTTGGTTGTTCTTGTTGCTGGGCTGTTCTTGTTCTTGGTGGTTGGAGTCTTTGAGATGGTTGGGCTCGAAATGGAGTTCGCTTCGCCTTATTTCGTTGGGCTCTGTTTTGTGGTTGCCATCTCTGTGTTGCTGGTTTTGTTGTATCTTCAAGTGAATTGGACTCTAGCCGGTGTAGTCGCTGTGGTCGAACCGCGTTGGGGGTTTAACGCATTGAGTCGGAGTGCGAATCTGATCCAGGGAATGCGAGGGGTGGCGTTGTCGTTGGTGCTGTTTTTCGGGGCGTTGTCTGGGATTCTAGGATTCTGCAGCACGGTTTCGGAGTTGGGTTTGGATGGGGCTACTGATGGCTGGAGGAATTGGAAGAGTCTGGCATTTGTGTTGCAGATTGTGGTGTTTTCGACGGCTCATATGCTGGTACTGCTCTATCATGCTGCTGCGAATACGGTGCTGTATATGTATTGCAAGGCCGTGCATGGAGAGCTTGCATTGGAAATTGCTCAAGAGTTTGCGAGCGAGTATGTGAGCCTGCCTTTCGATGATGGAAAAGTTCCTCATCTTGTTTCGGTTGCCTATGTTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000152 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009639 GO:0009640 GO:0009641 GO:0009642 GO:0009646 GO:0009647 GO:0009648 GO:0009649 GO:0009791 GO:0009812 GO:0009987 GO:0010119 GO:0010228 GO:0016567 GO:0016604 GO:0016740 GO:0019538 GO:0019787 GO:0022414 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0036211 GO:0042440 GO:0042752 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046283 GO:0046483 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080008 GO:0090304 GO:0140096 GO:1901360 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04115 ko04120 ko04712 map04115 map04120 map04712

Pfam Domains

Protein Families

WD40 zf-C3HC4_2

Protein Analysis

342

Amino Acids

37.59

Weight (kDa)

8.73

Isoelectric Point (pI)

37.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32950 AT2G32950
fragaria_vesca	FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_5g22570 FvH4_5g22570
malus_domestica	MD06G1037700.v1.1 MD10G1328500.v1.1 MD15G1405100.v1.1 MD15G1405200.v1.1 MD16G1272200.v1.1
prunus_persica	Prupe.4G013500_v2.0.a1 Prupe.5G031300_v2.0.a1 Prupe.5G031300_v2.0.a1 Prupe.5G031300_v2.0.a1 Prupe.5G031300_v2.0.a1
pyrus_communis	pycom10g27830 pycom16g24110
rosa_chinensis	RchiOBHm_Chr5g0001791 RchiOBHm_Chr7g0210341
rosa_laevigata	RLG00000003045 RLG00000030973
rosa_multiflora	Rmu_co8137394.1_g000001 Rmu_sc0003807.1_g000002 Rmu_ssc0000237.1_g000012
rosa_roxburghii	Rroxscaffold_1G00071250 Rroxscaffold_1G00074540 Rroxscaffold_3G00248380
rosa_rugosa	Rorug04G0393100 Rorug04G0393200 Rorug04G0393300 Rorug07G0121200 Rorug07G0121200 Rorug07G0121300
rosa_samantha	Rh5AG014400 Rh5BG017800 Rh5CG015500 Rh5DG015900 Rh7AG253900 Rh7BG248800 Rh7CG270700 Rh7DG261400
rosa_wichuraiana	Rw5G001390 Rw7G021640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	106
AccI	GTMKAC	2 cut(s)	156, 190
AccII	CGCG	1 cut(s)	640
AciI	CCGC	5 cut(s)	97, 194, 355, 375, 638
AclWI	GGATC	2 cut(s)	378, 673
AcoI	YGGCCR	2 cut(s)	352, 404
AcsI	RAATTY	1 cut(s)	209
AdeI	CACNNNGTG	1 cut(s)	439
AfaI	GTAC	2 cut(s)	418, 864
AfiI	CCNNNNNNNGG	3 cut(s)	106, 413, 644
AflII	CTTAAG	1 cut(s)	217
AgsI	TTSAA	1 cut(s)	596
AjnI	CCWGG	1 cut(s)	681
AluBI	AGCT	1 cut(s)	928
AluI	AGCT	1 cut(s)	928
Alw26I	GTCTC	1 cut(s)	18
AlwI	GGATC	2 cut(s)	378, 673
AoxI	GGCC	4 cut(s)	108, 352, 404, 912
ApeKI	GCWGC	3 cut(s)	753, 878, 881
ApoI	RAATTY	1 cut(s)	209
AspLEI	GCGC	2 cut(s)	57, 78
AspS9I	GGNCC	2 cut(s)	33, 109
AsuC2I	CCSGG	1 cut(s)	359
AsuHPI	GGTGA	3 cut(s)	34, 55, 316
AvaII	GGWCC	1 cut(s)	33
BalI	TGGCCA	1 cut(s)	406
BanII	GRGCYC	2 cut(s)	513, 549
BbsI	GAAGAC	3 cut(s)	115, 283, 328
BbvI	GCAGC	3 cut(s)	765, 865, 868
BccI	CCATC	6 cut(s)	143, 496, 572, 773, 785, 980
BceAI	ACGGC	3 cut(s)	358, 864, 899
BcgI	CGANNNNNNTGC	2 cut(s)	874, 908
BciT130I	CCWGG	1 cut(s)	683
BcnI	CCSGG	1 cut(s)	359
BcoDI	GTCTC	1 cut(s)	18
BfaI	CTAG	2 cut(s)	611, 743
BfmI	CTRYAG	2 cut(s)	328, 751
BfrI	CTTAAG	1 cut(s)	217
BisI	GCNGC	4 cut(s)	355, 754, 879, 882
BlsI	GCNGC	4 cut(s)	356, 755, 880, 883
Bme1390I	CCNGG	2 cut(s)	359, 683
Bme18I	GGWCC	1 cut(s)	33
BmgT120I	GGNCC	2 cut(s)	33, 109
BmrFI	CCNGG	2 cut(s)	359, 683
BmsI	GCATC	2 cut(s)	66, 87
BpiI	GAAGAC	3 cut(s)	115, 283, 328
BpmI	CTGGAG	1 cut(s)	817
BpuEI	CTTGAG	1 cut(s)	930
BpuMI	CCSGG	1 cut(s)	359
BsaJI	CCNNGG	2 cut(s)	340, 682
BsaXI	ACNNNNNCTCC	5 cut(s)	28, 77, 107, 218, 248
Bsc4I	CCNNNNNNNGG	3 cut(s)	106, 413, 644
Bse118I	RCCGGY	1 cut(s)	614
Bse1I	ACTGG	1 cut(s)	407
BseBI	CCWGG	1 cut(s)	683
BseDI	CCNNGG	2 cut(s)	340, 682
BseGI	GGATG	2 cut(s)	57, 784
BseLI	CCNNNNNNNGG	3 cut(s)	106, 413, 644
BseNI	ACTGG	1 cut(s)	407
BseRI	GAGGAG	3 cut(s)	119, 136, 226
BseXI	GCAGC	3 cut(s)	765, 865, 868
BseYI	CCCAGC	1 cut(s)	464
Bsh1236I	CGCG	1 cut(s)	640
Bsh1285I	CGRYCG	1 cut(s)	187
BshFI	GGCC	4 cut(s)	110, 354, 406, 914
BsiEI	CGRYCG	1 cut(s)	187
BsiSI	CCGG	2 cut(s)	359, 615
BslI	CCNNNNNNNGG	3 cut(s)	106, 413, 644
BsmAI	GTCTC	1 cut(s)	18
BsmBI	CGTCTC	1 cut(s)	18
BsmI	GAATGC	1 cut(s)	693
BsnI	GGCC	4 cut(s)	110, 354, 406, 914
Bsp1286I	GDGCHC	2 cut(s)	513, 549
Bsp143I	GATC	3 cut(s)	184, 383, 678
BspACI	CCGC	5 cut(s)	97, 194, 355, 375, 638
BspANI	GGCC	4 cut(s)	110, 354, 406, 914
BspFNI	CGCG	1 cut(s)	640
BspMAI	CTGCAG	1 cut(s)	755
BspPI	GGATC	2 cut(s)	378, 673
BspTI	CTTAAG	1 cut(s)	217
BsrFI	RCCGGY	1 cut(s)	614
BsrI	ACTGG	1 cut(s)	407
BssAI	RCCGGY	1 cut(s)	614
BssECI	CCNNGG	2 cut(s)	340, 682
BssMI	GATC	3 cut(s)	184, 383, 678
BssNAI	GTATAC	1 cut(s)	191
Bst1107I	GTATAC	1 cut(s)	191
Bst2UI	CCWGG	1 cut(s)	683
Bst4CI	ACNGT	3 cut(s)	421, 760, 892
Bst6I	CTCTTC	3 cut(s)	290, 311, 803
BstAFI	CTTAAG	1 cut(s)	217
BstC8I	GCNNGC	3 cut(s)	930, 958, 974
BstDSI	CCRYGG	1 cut(s)	340
BstF5I	GGATG	2 cut(s)	57, 784
BstFNI	CGCG	1 cut(s)	640
BstHHI	GCGC	2 cut(s)	57, 78
BstKTI	GATC	3 cut(s)	187, 386, 681
BstMAI	GTCTC	1 cut(s)	18
BstMBI	GATC	3 cut(s)	184, 383, 678
BstMCI	CGRYCG	1 cut(s)	187
BstMWI	GCNNNNNNNGC	3 cut(s)	351, 865, 925
BstNI	CCWGG	1 cut(s)	683
BstSCI	CCNGG	2 cut(s)	357, 681
BstSFI	CTRYAG	2 cut(s)	328, 751
BstUI	CGCG	1 cut(s)	640
BstV1I	GCAGC	3 cut(s)	765, 865, 868
BstV2I	GAAGAC	3 cut(s)	115, 283, 328
BstZ17I	GTATAC	1 cut(s)	191
BsuRI	GGCC	4 cut(s)	110, 354, 406, 914
BtgI	CCRYGG	1 cut(s)	340
BtgZI	GCGATG	1 cut(s)	163
BtsCI	GGATG	2 cut(s)	57, 784
Cac8I	GCNNGC	3 cut(s)	930, 958, 974
CfoI	GCGC	2 cut(s)	57, 78
Cfr10I	RCCGGY	1 cut(s)	614
Cfr13I	GGNCC	2 cut(s)	33, 109
CseI	GACGC	1 cut(s)	322
Csp6I	GTAC	2 cut(s)	417, 863
CviAII	CATG	2 cut(s)	875, 920
CviQI	GTAC	2 cut(s)	417, 863
DpnI	GATC	3 cut(s)	186, 385, 680
DpnII	GATC	3 cut(s)	184, 383, 678
DraIII	CACNNNGTG	1 cut(s)	439
EaeI	YGGCCR	2 cut(s)	352, 404
Eam1104I	CTCTTC	3 cut(s)	290, 311, 803
EarI	CTCTTC	3 cut(s)	290, 311, 803
Eco24I	GRGCYC	2 cut(s)	513, 549
Eco47I	GGWCC	1 cut(s)	33
EcoRII	CCWGG	1 cut(s)	681
EcoT38I	GRGCYC	2 cut(s)	513, 549
Esp3I	CGTCTC	1 cut(s)	18
FaeI	CATG	2 cut(s)	878, 923
FatI	CATG	2 cut(s)	874, 919
FauI	CCCGC	1 cut(s)	104
FauNDI	CATATG	1 cut(s)	855
FblI	GTMKAC	2 cut(s)	156, 190
Fnu4HI	GCNGC	4 cut(s)	355, 754, 879, 882
FokI	GGATG	2 cut(s)	44, 791
FriOI	GRGCYC	2 cut(s)	513, 549
Fsp4HI	GCNGC	4 cut(s)	355, 754, 879, 882
FspBI	CTAG	2 cut(s)	611, 743
GlaI	GCGC	2 cut(s)	56, 77
GluI	GCNGC	4 cut(s)	355, 754, 879, 882
GsaI	CCCAGC	1 cut(s)	468
GsuI	CTGGAG	1 cut(s)	817
HaeIII	GGCC	4 cut(s)	110, 354, 406, 914
HapII	CCGG	2 cut(s)	359, 615
HgaI	GACGC	1 cut(s)	322
HhaI	GCGC	2 cut(s)	57, 78
Hin1II	CATG	2 cut(s)	878, 923
Hin6I	GCGC	2 cut(s)	55, 76
HinP1I	GCGC	2 cut(s)	55, 76
HinfI	GANTC	9 cut(s)	47, 68, 492, 607, 661, 673, 739, 747, 811
HpaII	CCGG	2 cut(s)	359, 615
HphI	GGTGA	3 cut(s)	34, 55, 316
Hpy166II	GTNNAC	2 cut(s)	157, 191
Hpy188I	TCNGA	4 cut(s)	383, 666, 678, 766
Hpy188III	TCNNGA	2 cut(s)	31, 947
Hpy8I	GTNNAC	2 cut(s)	157, 191
Hpy99I	CGWCG	4 cut(s)	122, 155, 269, 850
HpyAV	CCTTC	2 cut(s)	46, 151
HpyCH4III	ACNGT	3 cut(s)	421, 760, 892
HpyCH4V	TGCA	5 cut(s)	753, 829, 909, 919, 932
HpyF10VI	GCNNNNNNNGC	3 cut(s)	351, 865, 925
Hsp92II	CATG	2 cut(s)	878, 923
HspAI	GCGC	2 cut(s)	55, 76
Kzo9I	GATC	3 cut(s)	184, 383, 678
Lsp1109I	GCAGC	3 cut(s)	765, 865, 868
LweI	GCATC	2 cut(s)	66, 87
MaeI	CTAG	2 cut(s)	611, 743
MalI	GATC	3 cut(s)	186, 385, 680
MboI	GATC	3 cut(s)	184, 383, 678
MboII	GAAGA	8 cut(s)	115, 205, 277, 283, 298, 328, 584, 820
MhlI	GDGCHC	2 cut(s)	513, 549
MlsI	TGGCCA	1 cut(s)	406
MluCI	AATT	5 cut(s)	199, 209, 601, 802, 939
MluNI	TGGCCA	1 cut(s)	406
MlyI	GAGTC	4 cut(s)	501, 601, 670, 820
MmeI	TCCRAC	2 cut(s)	469, 644
Mox20I	TGGCCA	1 cut(s)	406
MscI	TGGCCA	1 cut(s)	406
MseI	TTAA	2 cut(s)	218, 651
MslI	CAYNNNNRTG	1 cut(s)	569
Msp20I	TGGCCA	1 cut(s)	406
MspA1I	CMGCKG	1 cut(s)	377
MspCI	CTTAAG	1 cut(s)	217
MspI	CCGG	2 cut(s)	359, 615
MspR9I	CCNGG	2 cut(s)	359, 683
Mva1269I	GAATGC	1 cut(s)	693
MvaI	CCWGG	1 cut(s)	683
MvnI	CGCG	1 cut(s)	640
MwoI	GCNNNNNNNGC	3 cut(s)	351, 865, 925
NciI	CCSGG	1 cut(s)	359
NdeI	CATATG	1 cut(s)	855
NdeII	GATC	3 cut(s)	184, 383, 678
NlaIII	CATG	2 cut(s)	878, 923
NmeAIII	GCCGAG	1 cut(s)	294
PcsI	WCGNNNNNNNCGW	2 cut(s)	285, 630
PctI	GAATGC	1 cut(s)	693
PfeI	GAWTC	5 cut(s)	47, 68, 673, 739, 747
PflMI	CCANNNNNTGG	1 cut(s)	106
PkrI	GCNGC	4 cut(s)	356, 755, 880, 883
Ple19I	CGATCG	1 cut(s)	187
PleI	GAGTC	4 cut(s)	500, 601, 669, 819
PpsI	GAGTC	4 cut(s)	500, 601, 669, 819
Psp6I	CCWGG	1 cut(s)	681
PspFI	CCCAGC	1 cut(s)	464
PspGI	CCWGG	1 cut(s)	681
PspPI	GGNCC	2 cut(s)	33, 109
PstI	CTGCAG	1 cut(s)	755
PvuI	CGATCG	1 cut(s)	187
RsaI	GTAC	2 cut(s)	418, 864
RsaNI	GTAC	2 cut(s)	417, 863
RseI	CAYNNNNRTG	1 cut(s)	569
SaqAI	TTAA	2 cut(s)	218, 651
SatI	GCNGC	4 cut(s)	355, 754, 879, 882
Sau3AI	GATC	3 cut(s)	184, 383, 678
Sau96I	GGNCC	2 cut(s)	33, 109
SchI	GAGTC	4 cut(s)	501, 601, 670, 820
ScrFI	CCNGG	2 cut(s)	359, 683
SduI	GDGCHC	2 cut(s)	513, 549
SetI	ASST	6 cut(s)	30, 38, 177, 329, 396, 930
SfaNI	GCATC	2 cut(s)	66, 87
SfcI	CTRYAG	2 cut(s)	328, 751
SinI	GGWCC	1 cut(s)	33
SmiMI	CAYNNNNRTG	1 cut(s)	569
SmlI	CTYRAG	2 cut(s)	217, 945
SmoI	CTYRAG	2 cut(s)	217, 945
Sse9I	AATT	5 cut(s)	199, 209, 601, 802, 939
SsiI	CCGC	5 cut(s)	97, 194, 355, 375, 638
SspMI	CTAG	2 cut(s)	611, 743
StyD4I	CCNGG	2 cut(s)	357, 681
TaaI	ACNGT	3 cut(s)	421, 760, 892
TaqI	TCGA	7 cut(s)	50, 71, 513, 633, 845, 981, 1024
TasI	AATT	5 cut(s)	199, 209, 601, 802, 939
TauI	GCSGC	1 cut(s)	357
TfiI	GAWTC	5 cut(s)	47, 68, 673, 739, 747
Tru1I	TTAA	2 cut(s)	218, 651
Tru9I	TTAA	2 cut(s)	218, 651
TseI	GCWGC	3 cut(s)	753, 878, 881
TspDTI	ATGAA	1 cut(s)	358
TspGWI	ACGGA	3 cut(s)	106, 139, 376
Van91I	CCANNNNNTGG	1 cut(s)	106
Vha464I	CTTAAG	1 cut(s)	217
VpaK11BI	GGWCC	1 cut(s)	33
XapI	RAATTY	1 cut(s)	209
XcmI	CCANNNNNNNNNTGG	1 cut(s)	347
XmiI	GTMKAC	2 cut(s)	156, 190
XspI	CTAG	2 cut(s)	611, 743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.