Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001361

Physical Location & Seq

Genomic Coordinates Forward (+)

608316 .. 612872

Gene Structure 4557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g01260.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1878 bp

ATGGGCGGAGGAGCGATGGTGCCGACAGGGGTGAAGATGGAGCTAATGTCTGCTGACGAAACGGGGGCATTTGAGAAGGAGGCTCCGCCGGACAAGGATATGATGTGTCCGATATGCATTCAGGTGATAAGGGACGCGTTCCTCACTGCTTGTGGCCATAGCTTCTGCCACAGCTGCATCGTCACTCATCTCGGAATCAAGAGCGACTGTCCTTGCTGCGGTCAATACCTCACCCCAAACCTCATCTTCCCTAATTTCTTGCTCGACAAGTTGTTGAGAAAATCGTCCGCGTATATGATAGAGAGGACCGGATCTCCGTTGGAGCATCTGCGCCGGAGATTGCATGAGGGTTGCGATATGTCAATTAGAGAGGTGGAAGGGTTGTTGTCTCTTCTCGAAGAGAAGAAGAGGAAAATGGAGCTGCAAGAGTCCGAGTCGGGCATGGAGATCATGGTTGGGTTCTTGCATTCCCTTGGAAGGCAAAAGCTAGAGGAGCTCAATGAGATACAAACTGATCTTGATTACATTAAGGAGGACCTGATTGCGGTGGAGAGACGTAGATTTGAACTATTCAGGCAACAACATGAGAGGTCATTGCAGAGTGATGACATTGTCTATAATGCGCAATATGTGCAAGCGCAGATGAGTTCTATCAATTTACATAGCAACAGGGCTGTTGTAAATGATGATGAAACTCCTACAAGGTCTATGCAGCCTATAAATCCACCAGGAGAACTGTCGACGGCAAGGAAAAGGCGTGTCCGTTCACAGTTCAACGACCTAGAAGAGTGTTACTTACAAAAGCGGCGAAATGGGAACAAACAAGGGGATTTAGATGCTATGGATATAGAAGATTATAATCCAGGCCTTGAAGACTTTTACGCTATGCTAAAGGGCTTTACAAAATACAGTCGATTGAGGGTCATTTCTGAACTGAGACAGGGTGATATTTTTCACTCTGCAAATATTGTGTCAAGTATAGAATTTGATCGAGACGAGGAATTGTTTGCTACTGCTGGGGTTTCACGGTGCATCAAGGTTTTTGAGTTTTCCTCGGTGATTAATGAACCTGAAGATATCCACTGTGCTGTCGAAGAGATATCCACACGATCCAAACTTAGTTGCTTGAGTTGGAACAAGTACGCTAAAAACCAAATTGCTAGTAGTGACTACGAGGGGATAGTAACAGTTTGGGATGTAAATACTCGTCAGAGTGTGATGGAATATGAAGAACATGAAAAGCGAGCTTGGAGCGTCGATTTCTCAAGCACCGATCCGTCAATGCTTGTGTCTGGAAGTGATGACTGCAAGGTCAAAATTTGGTGCACAAATCAAGAAGAAAGTGCTTTGAACATCAACATGAAGGCAAACATTTGTTCTGTCAAGTATAATCCCGGATCCAGCTTTTTCGTTGCGGTTGGTTCTGCAGATCATCACATTCATTATTATGACTTGAGAAATATCAGCCAACCACTGCATGTATTTAGCGGGCATAGGAAAGCTGTTTCGTACGTGAAATTCTTGTCTAACACTGAACTTGCTTCTGCATCGACTGACAGCACATTGCGATTGTGGGATGTAAAGAAGAACTTGCCGTTATGCACGTACAGAGGTCACATGAATGAGAAGAACTTTGTAGGCCTCGCAGTGAGTAATGACTACATTGCTTGCGGCAGCGAGACCAATGAAGTGTTCGTTTATCACAAGGGTATCCCAAAACCTATGGCTTGGCATAAATTTGTCTCTTCGGATTTAAACTACGAAGACGATGGTGCAGGATCATACTTCATCAGTGCTGTGTGTTGGAAGAGGGACAGTCCAATGATACTGTCAGCAAACAGTCAAGGAACAGTTAAAGTTCTTGTCCTTGCAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000152 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009639 GO:0009640 GO:0009641 GO:0009642 GO:0009646 GO:0009647 GO:0009648 GO:0009649 GO:0009791 GO:0009812 GO:0009987 GO:0010119 GO:0010228 GO:0016567 GO:0016604 GO:0016740 GO:0019538 GO:0019787 GO:0022414 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0036211 GO:0042440 GO:0042752 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046283 GO:0046483 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080008 GO:0090304 GO:0140096 GO:1901360 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04115 ko04120 ko04712 map04115 map04120 map04712

Pfam Domains

Protein Families

WD40 zf-C3HC4_2

Protein Analysis

626

Amino Acids

70.86

Weight (kDa)

5.58

Isoelectric Point (pI)

58.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_2	PF13923	35 - 73	9.5e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	36 - 73	1.5e-06	Zinc finger, C3HC4 type (RING finger)
Beta-prop_WDR3_2nd	PF25172	320 - 485	5.5e-08	WDR3 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	321 - 446	2.6e-11	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	322 - 568	9.4e-34	WDR5 beta-propeller domain
Beta-prop_RIG_2nd	PF23775	322 - 405	2.8e-07	RIG second beta-propeller
WD40_MABP1-WDR62_1st	PF24780	368 - 485	6.1e-06	MABP1/WDR62 first WD40 domain
WD40_Gbeta	PF25391	369 - 494	1.3e-06	G protein beta WD-40 repeat protein
WD40_Prp19	PF24814	369 - 485	3e-12	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	370 - 488	2.5e-16	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	370 - 467	3.5e-12	CDC20/Fizzy WD40 domain
Beta-prop_EML_2	PF23414	383 - 510	4.1e-12	Echinoderm microtubule-associated protein second beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	383 - 562	1.3e-07	MABP1/WDR62 second WD40 domain
Beta-prop_EML	PF23409	388 - 554	1e-07	Echinoderm microtubule-associated protein first beta-propeller
WD40_Gbeta	PF25391	423 - 554	5.9e-10	G protein beta WD-40 repeat protein
Beta-prop_TEP1_2nd	PF25047	425 - 530	3.5e-08	TEP-1 second beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	428 - 537	8.2e-11	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	453 - 559	1.9e-14	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	455 - 536	1.2e-09	WDHD1 first WD40 domain
WD40_Prp19	PF24814	455 - 562	1.2e-11	Prp19 WD40 domain
WD40_CDC20-Fz	PF24807	460 - 569	9e-08	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_2nd	PF25172	470 - 569	7.3e-06	WDR3 second beta-propeller domain
WD40	PF00400	490 - 526	4e-06	WD domain, G-beta repeat
Beta-prop_THOC3	PF25174	494 - 622	1.9e-10	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32950 AT2G32950
fragaria_vesca	FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_5g22570 FvH4_5g22570
malus_domestica	MD06G1037700.v1.1 MD10G1328500.v1.1 MD15G1405100.v1.1 MD15G1405200.v1.1 MD16G1272200.v1.1
prunus_persica	Prupe.4G013500_v2.0.a1 Prupe.5G031300_v2.0.a1 Prupe.5G031300_v2.0.a1 Prupe.5G031300_v2.0.a1 Prupe.5G031300_v2.0.a1
pyrus_communis	pycom10g27830 pycom16g24110
rosa_chinensis	RchiOBHm_Chr5g0001791 RchiOBHm_Chr7g0210341
rosa_laevigata	RLG00000003045 RLG00000030973
rosa_multiflora	Rmu_co8137394.1_g000001 Rmu_sc0003807.1_g000002 Rmu_ssc0000237.1_g000012
rosa_roxburghii	Rroxscaffold_1G00071250 Rroxscaffold_1G00074540 Rroxscaffold_3G00248380
rosa_rugosa	Rorug04G0393100 Rorug04G0393200 Rorug04G0393300 Rorug07G0121200 Rorug07G0121200 Rorug07G0121300
rosa_samantha	Rh5AG014400 Rh5BG017800 Rh5CG015500 Rh5DG015900 Rh7AG253900 Rh7BG248800 Rh7CG270700 Rh7DG261400
rosa_wichuraiana	Rw5G001390 Rw7G021640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	858
AasI	GACNNNNNNGTC	1 cut(s)	1310
Acc16I	TGCGCA	1 cut(s)	624
AccB1I	GGYRCC	1 cut(s)	19
AccI	GTMKAC	1 cut(s)	740
AccII	CGCG	2 cut(s)	137, 290
AciI	CCGC	9 cut(s)	6, 86, 219, 288, 545, 805, 1415, 1488, 1671
AclWI	GGATC	6 cut(s)	319, 1104, 1268, 1392, 1405, 1786
AcoI	YGGCCR	1 cut(s)	154
AcsI	RAATTY	4 cut(s)	983, 1317, 1517, 1736
AcuI	CTGAAG	1 cut(s)	1092
AfaI	GTAC	3 cut(s)	1142, 1511, 1607
AfiI	CCNNNNNNNGG	3 cut(s)	218, 477, 544
AflIII	ACRYGT	1 cut(s)	135
AgsI	TTSAA	4 cut(s)	566, 775, 872, 1351
AjnI	CCWGG	2 cut(s)	727, 862
AjuI	GAANNNNNNNTTGG	2 cut(s)	1676, 1708
AluBI	AGCT	9 cut(s)	43, 162, 174, 421, 487, 496, 1247, 1404, 1502
AluI	AGCT	9 cut(s)	43, 162, 174, 421, 487, 496, 1247, 1404, 1502
Alw21I	GWGCWC	2 cut(s)	498, 1328
Alw26I	GTCTC	6 cut(s)	393, 547, 931, 987, 1673, 1747
Alw44I	GTGCAC	1 cut(s)	1324
AlwI	GGATC	6 cut(s)	319, 1104, 1268, 1392, 1405, 1786
AoxI	GGCC	3 cut(s)	154, 865, 1639
ApaLI	GTGCAC	1 cut(s)	1324
ApeKI	GCWGC	6 cut(s)	174, 216, 421, 712, 1674, 1871
ApoI	RAATTY	4 cut(s)	983, 1317, 1517, 1736
ArsI	GACNNNNNNTTYG	2 cut(s)	956, 988
AseI	ATTAAT	1 cut(s)	1062
AspLEI	GCGC	3 cut(s)	333, 625, 640
AspS9I	GGNCC	2 cut(s)	306, 535
AsuC2I	CCSGG	1 cut(s)	1395
AsuHPI	GGTGA	5 cut(s)	43, 136, 223, 956, 1069
AvaII	GGWCC	2 cut(s)	306, 535
BaeGI	GKGCMC	1 cut(s)	1328
BaeI	ACNNNNGTAYC	2 cut(s)	1693, 1726
BalI	TGGCCA	1 cut(s)	156
BamHI	GGATCC	1 cut(s)	1397
BanI	GGYRCC	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	498
BbsI	GAAGAC	2 cut(s)	879, 1770
Bbv12I	GWGCWC	2 cut(s)	498, 1328
BbvI	GCAGC	5 cut(s)	161, 203, 408, 724, 1686
BccI	CCATC	4 cut(s)	10, 31, 1213, 1763
BceAI	ACGGC	2 cut(s)	759, 1579
BciT130I	CCWGG	2 cut(s)	729, 864
BciVI	GTATCC	1 cut(s)	1721
BcnI	CCSGG	1 cut(s)	1395
BcoDI	GTCTC	6 cut(s)	393, 547, 931, 987, 1673, 1747
BfaI	CTAG	3 cut(s)	488, 782, 1161
BfmI	CTRYAG	1 cut(s)	1425
BfuI	GTATCC	1 cut(s)	1721
BisI	GCNGC	8 cut(s)	175, 217, 422, 713, 806, 1672, 1675, 1872
BlsI	GCNGC	8 cut(s)	176, 218, 423, 714, 807, 1673, 1676, 1873
Bme1390I	CCNGG	3 cut(s)	729, 864, 1395
Bme18I	GGWCC	2 cut(s)	306, 535
BmgT120I	GGNCC	2 cut(s)	306, 535
BmiI	GGNNCC	3 cut(s)	21, 84, 1399
BmrFI	CCNGG	3 cut(s)	729, 864, 1395
BmsI	GCATC	5 cut(s)	186, 334, 826, 1041, 1556
BpiI	GAAGAC	2 cut(s)	879, 1770
BplI	GAGNNNNNCTC	2 cut(s)	1037, 1069
BpuEI	CTTGAG	3 cut(s)	1147, 1249, 1474
BpuMI	CCSGG	1 cut(s)	1395
BsaAI	YACGTR	2 cut(s)	1513, 1605
BsaBI	GATNNNNATC	1 cut(s)	858
BsaI	GGTCTC	1 cut(s)	1673
BsaJI	CCNNGG	2 cut(s)	472, 1053
BsaWI	WCCGGW	1 cut(s)	308
BsaXI	ACNNNNNCTCC	5 cut(s)	32, 33, 62, 298, 328
Bsc4I	CCNNNNNNNGG	3 cut(s)	218, 477, 544
Bse3DI	GCAATG	3 cut(s)	593, 1562, 1662
Bse8I	GATNNNNATC	1 cut(s)	858
BseBI	CCWGG	2 cut(s)	729, 864
BseDI	CCNNGG	2 cut(s)	472, 1053
BseGI	GGATG	2 cut(s)	1201, 1582
BseJI	GATNNNNATC	1 cut(s)	858
BseLI	CCNNNNNNNGG	3 cut(s)	218, 477, 544
BseMI	GCAATG	3 cut(s)	593, 1562, 1662
BseMII	CTCAG	1 cut(s)	926
BseRI	GAGGAG	2 cut(s)	24, 506
BseSI	GKGCMC	1 cut(s)	1328
BseXI	GCAGC	5 cut(s)	161, 203, 408, 724, 1686
BseYI	CCCAGC	1 cut(s)	1016
BsgI	GTGCAG	1 cut(s)	1794
Bsh1236I	CGCG	2 cut(s)	137, 290
BshFI	GGCC	3 cut(s)	156, 867, 1641
BshNI	GGYRCC	1 cut(s)	19
BsiHKAI	GWGCWC	2 cut(s)	498, 1328
BsiSI	CCGG	4 cut(s)	89, 309, 334, 1395
BsiWI	CGTACG	1 cut(s)	1509
BslFI	GGGAC	2 cut(s)	146, 1826
BslI	CCNNNNNNNGG	3 cut(s)	218, 477, 544
BsmAI	GTCTC	6 cut(s)	393, 547, 931, 987, 1673, 1747
BsmBI	CGTCTC	2 cut(s)	547, 987
BsmFI	GGGAC	2 cut(s)	146, 1826
BsmI	GAATGC	2 cut(s)	117, 466
BsnI	GGCC	3 cut(s)	156, 867, 1641
Bso31I	GGTCTC	1 cut(s)	1673
Bsp1286I	GDGCHC	2 cut(s)	498, 1328
Bsp143I	GATC	9 cut(s)	311, 447, 514, 988, 1109, 1273, 1397, 1429, 1778
BspACI	CCGC	9 cut(s)	6, 86, 219, 288, 545, 805, 1415, 1488, 1671
BspANI	GGCC	3 cut(s)	156, 867, 1641
BspCNI	CTCAG	1 cut(s)	927
BspFNI	CGCG	2 cut(s)	137, 290
BspLI	GGNNCC	3 cut(s)	21, 84, 1399
BspMAI	CTGCAG	1 cut(s)	1429
BspPI	GGATC	6 cut(s)	319, 1104, 1268, 1392, 1405, 1786
BspT107I	GGYRCC	1 cut(s)	19
BspTNI	GGTCTC	1 cut(s)	1673
BsrDI	GCAATG	3 cut(s)	593, 1562, 1662
BssECI	CCNNGG	2 cut(s)	472, 1053
BssMI	GATC	9 cut(s)	311, 447, 514, 988, 1109, 1273, 1397, 1429, 1778
BssT1I	CCWWGG	1 cut(s)	472
Bst2UI	CCWGG	2 cut(s)	729, 864
Bst6I	CTCTTC	7 cut(s)	393, 396, 401, 780, 1089, 1750, 1802
BstAPI	GCANNNNNTGC	1 cut(s)	631
BstBAI	YACGTR	2 cut(s)	1513, 1605
BstC8I	GCNNGC	4 cut(s)	636, 1245, 1490, 1669
BstDEI	CTNAG	2 cut(s)	935, 1118
BstF5I	GGATG	2 cut(s)	1201, 1582
BstFNI	CGCG	2 cut(s)	137, 290
BstHHI	GCGC	3 cut(s)	333, 625, 640
BstKTI	GATC	9 cut(s)	314, 450, 517, 991, 1112, 1276, 1400, 1432, 1781
BstMAI	GTCTC	6 cut(s)	393, 547, 931, 987, 1673, 1747
BstMBI	GATC	9 cut(s)	311, 447, 514, 988, 1109, 1273, 1397, 1429, 1778
BstMWI	GCNNNNNNNGC	3 cut(s)	174, 493, 631
BstNI	CCWGG	2 cut(s)	729, 864
BstNSI	RCATGY	1 cut(s)	1481
BstSCI	CCNGG	3 cut(s)	727, 862, 1393
BstSFI	CTRYAG	1 cut(s)	1425
BstSLI	GKGCMC	1 cut(s)	1328
BstUI	CGCG	2 cut(s)	137, 290
BstV1I	GCAGC	5 cut(s)	161, 203, 408, 724, 1686
BstV2I	GAAGAC	2 cut(s)	879, 1770
BstX2I	RGATCY	2 cut(s)	311, 1397
BstYI	RGATCY	2 cut(s)	311, 1397
BsuI	GTATCC	1 cut(s)	1721
BsuRI	GGCC	3 cut(s)	156, 867, 1641
BtgZI	GCGATG	1 cut(s)	29
BtsCI	GGATG	2 cut(s)	1201, 1582
BtsI	GCAGTG	3 cut(s)	144, 1472, 1653
BtsIMutI	CAGTG	6 cut(s)	144, 1081, 1472, 1530, 1653, 1798
Cac8I	GCNNGC	4 cut(s)	636, 1245, 1490, 1669
CfoI	GCGC	3 cut(s)	333, 625, 640
Cfr13I	GGNCC	2 cut(s)	306, 535
CseI	GACGC	2 cut(s)	143, 1243
Csp6I	GTAC	3 cut(s)	1141, 1510, 1606
CviAII	CATG	8 cut(s)	344, 442, 451, 584, 1235, 1360, 1478, 1618
CviQI	GTAC	3 cut(s)	1141, 1510, 1606
DdeI	CTNAG	2 cut(s)	935, 1118
DpnI	GATC	9 cut(s)	313, 449, 516, 990, 1111, 1275, 1399, 1431, 1780
DpnII	GATC	9 cut(s)	311, 447, 514, 988, 1109, 1273, 1397, 1429, 1778
DraI	TTTAAA	1 cut(s)	1755
DrdI	GACNNNNNNGTC	1 cut(s)	1310
DseDI	GACNNNNNNGTC	1 cut(s)	1310
EaeI	YGGCCR	1 cut(s)	154
Eam1104I	CTCTTC	7 cut(s)	393, 396, 401, 780, 1089, 1750, 1802
EarI	CTCTTC	7 cut(s)	393, 396, 401, 780, 1089, 1750, 1802
EciI	GGCGGA	2 cut(s)	21, 75
Ecl136II	GAGCTC	1 cut(s)	496
Eco130I	CCWWGG	1 cut(s)	472
Eco147I	AGGCCT	2 cut(s)	867, 1641
Eco24I	GRGCYC	1 cut(s)	498
Eco31I	GGTCTC	1 cut(s)	1673
Eco32I	GATATC	2 cut(s)	1078, 1101
Eco47I	GGWCC	2 cut(s)	306, 535
Eco53kI	GAGCTC	1 cut(s)	496
Eco57I	CTGAAG	1 cut(s)	1092
EcoICRI	GAGCTC	1 cut(s)	496
EcoO109I	RGGNCCY	1 cut(s)	535
EcoRII	CCWGG	2 cut(s)	727, 862
EcoRV	GATATC	2 cut(s)	1078, 1101
EcoT14I	CCWWGG	1 cut(s)	472
EcoT22I	ATGCAT	1 cut(s)	119
EcoT38I	GRGCYC	1 cut(s)	498
ErhI	CCWWGG	1 cut(s)	472
Esp3I	CGTCTC	2 cut(s)	547, 987
FaeI	CATG	8 cut(s)	347, 445, 454, 587, 1238, 1363, 1481, 1621
FalI	AAGNNNNNCTT	2 cut(s)	1574, 1606
FaqI	GGGAC	2 cut(s)	146, 1826
FatI	CATG	8 cut(s)	343, 441, 450, 583, 1234, 1359, 1477, 1617
FauI	CCCGC	1 cut(s)	1481
FblI	GTMKAC	1 cut(s)	740
Fnu4HI	GCNGC	8 cut(s)	175, 217, 422, 713, 806, 1672, 1675, 1872
FokI	GGATG	2 cut(s)	1208, 1589
FriOI	GRGCYC	1 cut(s)	498
Fsp4HI	GCNGC	8 cut(s)	175, 217, 422, 713, 806, 1672, 1675, 1872
FspBI	CTAG	3 cut(s)	488, 782, 1161
FspI	TGCGCA	1 cut(s)	624
GlaI	GCGC	3 cut(s)	332, 624, 639
GluI	GCNGC	8 cut(s)	175, 217, 422, 713, 806, 1672, 1675, 1872
GsaI	CCCAGC	1 cut(s)	1020
HaeIII	GGCC	3 cut(s)	156, 867, 1641
HapII	CCGG	4 cut(s)	89, 309, 334, 1395
HgaI	GACGC	2 cut(s)	143, 1243
HhaI	GCGC	3 cut(s)	333, 625, 640
Hin1II	CATG	8 cut(s)	347, 445, 454, 587, 1238, 1363, 1481, 1621
Hin6I	GCGC	3 cut(s)	331, 623, 638
HinP1I	GCGC	3 cut(s)	331, 623, 638
HincII	GTYRAC	1 cut(s)	741
HindII	GTYRAC	1 cut(s)	741
HinfI	GANTC	3 cut(s)	195, 428, 434
HpaII	CCGG	4 cut(s)	89, 309, 334, 1395
HphI	GGTGA	5 cut(s)	43, 136, 223, 956, 1069
Hpy166II	GTNNAC	3 cut(s)	741, 767, 1326
Hpy188I	TCNGA	6 cut(s)	111, 194, 433, 931, 1212, 1750
Hpy188III	TCNNGA	6 cut(s)	199, 395, 518, 992, 1293, 1334
Hpy8I	GTNNAC	3 cut(s)	741, 767, 1326
Hpy99I	CGWCG	2 cut(s)	745, 1259
HpyAV	CCTTC	4 cut(s)	70, 371, 471, 1357
HpyCH4IV	ACGT	3 cut(s)	556, 1512, 1604
HpyF10VI	GCNNNNNNNGC	3 cut(s)	174, 493, 631
HpyF3I	CTNAG	2 cut(s)	935, 1118
HpySE526I	ACGT	3 cut(s)	556, 1512, 1604
Hsp92II	CATG	8 cut(s)	347, 445, 454, 587, 1238, 1363, 1481, 1621
HspAI	GCGC	3 cut(s)	331, 623, 638
Kzo9I	GATC	9 cut(s)	311, 447, 514, 988, 1109, 1273, 1397, 1429, 1778
LmnI	GCTCC	7 cut(s)	11, 40, 88, 322, 418, 493, 1251
Lsp1109I	GCAGC	5 cut(s)	161, 203, 408, 724, 1686
LweI	GCATC	5 cut(s)	186, 334, 826, 1041, 1556
MaeI	CTAG	3 cut(s)	488, 782, 1161
MaeII	ACGT	3 cut(s)	556, 1512, 1604
MaeIII	GTNAC	5 cut(s)	181, 791, 1166, 1183, 1613
MalI	GATC	9 cut(s)	313, 449, 516, 990, 1111, 1275, 1399, 1431, 1780
MboI	GATC	9 cut(s)	311, 447, 514, 988, 1109, 1273, 1397, 1429, 1778
MflI	RGATCY	2 cut(s)	311, 1397
MhlI	GDGCHC	2 cut(s)	498, 1328
MlsI	TGGCCA	1 cut(s)	156
MluCI	AATT	9 cut(s)	253, 363, 655, 983, 1001, 1155, 1317, 1517, 1736
MluI	ACGCGT	1 cut(s)	135
MluNI	TGGCCA	1 cut(s)	156
MlyI	GAGTC	2 cut(s)	437, 443
MmeI	TCCRAC	3 cut(s)	300, 1112, 1784
Mox20I	TGGCCA	1 cut(s)	156
Mph1103I	ATGCAT	1 cut(s)	119
MscI	TGGCCA	1 cut(s)	156
MseI	TTAA	4 cut(s)	528, 1062, 1754, 1854
MslI	CAYNNNNRTG	4 cut(s)	122, 1358, 1446, 1620
Msp20I	TGGCCA	1 cut(s)	156
MspA1I	CMGCKG	1 cut(s)	174
MspI	CCGG	4 cut(s)	89, 309, 334, 1395
MspR9I	CCNGG	3 cut(s)	729, 864, 1395
Mva1269I	GAATGC	2 cut(s)	117, 466
MvaI	CCWGG	2 cut(s)	729, 864
MvnI	CGCG	2 cut(s)	137, 290
MwoI	GCNNNNNNNGC	3 cut(s)	174, 493, 631
NciI	CCSGG	1 cut(s)	1395
NdeII	GATC	9 cut(s)	311, 447, 514, 988, 1109, 1273, 1397, 1429, 1778
NlaIII	CATG	8 cut(s)	347, 445, 454, 587, 1238, 1363, 1481, 1621
NlaIV	GGNNCC	3 cut(s)	21, 84, 1399
NmuCI	GTSAC	3 cut(s)	181, 1166, 1613
NsbI	TGCGCA	1 cut(s)	624
NsiI	ATGCAT	1 cut(s)	119
NspI	RCATGY	1 cut(s)	1481
PceI	AGGCCT	2 cut(s)	867, 1641
PctI	GAATGC	2 cut(s)	117, 466
PfeI	GAWTC	1 cut(s)	195
Pfl23II	CGTACG	1 cut(s)	1509
PflFI	GACNNNGTC	1 cut(s)	611
PfoI	TCCNGGA	1 cut(s)	1393
PkrI	GCNGC	8 cut(s)	176, 218, 423, 714, 807, 1673, 1676, 1873
PleI	GAGTC	2 cut(s)	436, 442
PpsI	GAGTC	2 cut(s)	436, 442
Ppu21I	YACGTR	2 cut(s)	1513, 1605
PpuMI	RGGWCCY	1 cut(s)	535
PshBI	ATTAAT	1 cut(s)	1062
PsiI	TTATAA	1 cut(s)	858
Psp124BI	GAGCTC	1 cut(s)	498
Psp5II	RGGWCCY	1 cut(s)	535
Psp6I	CCWGG	2 cut(s)	727, 862
PspFI	CCCAGC	1 cut(s)	1016
PspGI	CCWGG	2 cut(s)	727, 862
PspLI	CGTACG	1 cut(s)	1509
PspN4I	GGNNCC	3 cut(s)	21, 84, 1399
PspPI	GGNCC	2 cut(s)	306, 535
PspPPI	RGGWCCY	1 cut(s)	535
PstI	CTGCAG	1 cut(s)	1429
PsuI	RGATCY	2 cut(s)	311, 1397
PsyI	GACNNNGTC	1 cut(s)	611
PvuII	CAGCTG	1 cut(s)	174
RsaI	GTAC	3 cut(s)	1142, 1511, 1607
RsaNI	GTAC	3 cut(s)	1141, 1510, 1606
RseI	CAYNNNNRTG	4 cut(s)	122, 1358, 1446, 1620
SacI	GAGCTC	1 cut(s)	498
SalI	GTCGAC	1 cut(s)	739
SaqAI	TTAA	4 cut(s)	528, 1062, 1754, 1854
SatI	GCNGC	8 cut(s)	175, 217, 422, 713, 806, 1672, 1675, 1872
Sau3AI	GATC	9 cut(s)	311, 447, 514, 988, 1109, 1273, 1397, 1429, 1778
Sau96I	GGNCC	2 cut(s)	306, 535
SchI	GAGTC	2 cut(s)	437, 443
ScrFI	CCNGG	3 cut(s)	729, 864, 1395
SduI	GDGCHC	2 cut(s)	498, 1328
SfaNI	GCATC	5 cut(s)	186, 334, 826, 1041, 1556
SfcI	CTRYAG	1 cut(s)	1425
SinI	GGWCC	2 cut(s)	306, 535
SmiMI	CAYNNNNRTG	4 cut(s)	122, 1358, 1446, 1620
SmlI	CTYRAG	3 cut(s)	1126, 1264, 1453
SmoI	CTYRAG	3 cut(s)	1126, 1264, 1453
Sse9I	AATT	9 cut(s)	253, 363, 655, 983, 1001, 1155, 1317, 1517, 1736
SseBI	AGGCCT	2 cut(s)	867, 1641
SsiI	CCGC	9 cut(s)	6, 86, 219, 288, 545, 805, 1415, 1488, 1671
SspI	AATATT	1 cut(s)	967
SspMI	CTAG	3 cut(s)	488, 782, 1161
SstI	GAGCTC	1 cut(s)	498
StuI	AGGCCT	2 cut(s)	867, 1641
StyD4I	CCNGG	3 cut(s)	727, 862, 1393
StyI	CCWWGG	1 cut(s)	472
TaiI	ACGT	3 cut(s)	559, 1515, 1607
TaqI	TCGA	8 cut(s)	264, 396, 740, 913, 991, 1092, 1257, 1550
TasI	AATT	9 cut(s)	253, 363, 655, 983, 1001, 1155, 1317, 1517, 1736
TauI	GCSGC	2 cut(s)	808, 1674
TfiI	GAWTC	1 cut(s)	195
Tru1I	TTAA	4 cut(s)	528, 1062, 1754, 1854
Tru9I	TTAA	4 cut(s)	528, 1062, 1754, 1854
TscAI	CASTG	6 cut(s)	151, 1088, 1479, 1537, 1653, 1798
TseFI	GTSAC	3 cut(s)	181, 1166, 1613
TseI	GCWGC	6 cut(s)	174, 216, 421, 712, 1674, 1871
Tsp45I	GTSAC	3 cut(s)	181, 1166, 1613
TspDTI	ATGAA	9 cut(s)	705, 1080, 1242, 1251, 1376, 1430, 1634, 1701, 1777
TspGWI	ACGGA	3 cut(s)	306, 752, 1266
TspRI	CASTG	6 cut(s)	151, 1088, 1479, 1537, 1653, 1798
Tth111I	GACNNNGTC	1 cut(s)	611
VneI	GTGCAC	1 cut(s)	1324
VpaK11BI	GGWCC	2 cut(s)	306, 535
VspI	ATTAAT	1 cut(s)	1062
XapI	RAATTY	4 cut(s)	983, 1317, 1517, 1736
XceI	RCATGY	1 cut(s)	1481
XmiI	GTMKAC	1 cut(s)	740
XspI	CTAG	3 cut(s)	488, 782, 1161
Zsp2I	ATGCAT	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.