Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001361

Physical Location & Seq

Genomic Coordinates Forward (+)

92121952 .. 92126383

Gene Structure 4432 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00071250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1743 bp

ATGGGTGGAGGACCAATGTTCCCGACCGTGGAGAAACTGGAGCTAATGGCGGCAGACTCATCGTCCGCGGAAACGGCGGCGTTTCAGAAGGAGGCTCCGCCGGACAAGGACTTGATGTGTCCGATATGCATACAGGTGATAAGGGACGCGTTCCTCACTGCTTGCGGCCATAGCTTCTGCCACAGCTGCATAGTCACTCATCTCGGAATCAAGAGCGACTGTCCTTGCTGTGGTCAACACCTCACCCCCAACCTAATCTTTCCCAATTTCTTGCTCGACAAGTTGTTGAAAAAATCTATGGCGTATCGGATGGAGAGGACAGGATCGCCGTTGGAGCATCTGCGGCAGAAATTGCATGAGGGCTGCGATATGTCAATTAGAGAGCTGGAAGGGCTGCTGTCTCTTCTTGAAGAGAAGAAGAGGAAAATGGAGCTGCAAGAGTCTGAATCGAGCATGGAGATCATGCTTATACAAGCTGATCTTGATTACATTAAGGAGGACATGATTGCGGTGGAGAGACGTAGAATTGAACTATACAGGCAACAACAGAATAGGTCAGTGAGACTGAGAACGCTTGGTGATGATCAGCAGAGCAATGACATTGTGTATAGTGCACAATATGTGCAAGCGCAGATGAGTTCTATCAATTTACATAACAACAGGGCTGTTGTAAATGATGATGTGCAAGACCATACACAGTCTATGCATCCTGTTACTCCACAAGTACTGTCAGTGGCAAGGAAGAGGCGAGTACATTCACAGGCCAATGTAAAGGAGTTCTGCACTTCAGATAGGCTGTTCAACGACCTACAAGAGTGTTACTTGCAAAAGCGGCGAAATTGGAACAAACAAAGGGATTCATATGCTATGGATATAGAAGATTACAATCCAGGCCTTGAAGACTTCCACTCTGTGCTAAAGGGCTTTACACAGTACAGCATAGAATTTGATCGAGACGAGCAATTGTTTGCTACTGCTGGGGTTTCACGGTGCATCAAGGTTTTTGAGTTTTCCTCGGTTGTTAATGAACCTGAAGATATCCACTGTGCTGTCGAAGAGATATCCACACGATCCAAACTTAGTTGCTTGAGCTGGAATAAGTACACTAAAAATCAAATTGCTAGTAGTGACTACGAGGGGATAGTAACAGTTTGGGATGTAACTACTCGTCAGAGTGTGATGGAATATGAGGAGCATGAAAAGCGAGCTTGGAGTGTTGATTTTTCAAGCACCGATCCTTCAATGCTTGTGTCTGGAAGTGATGACTGCAAGGTTGGTTCTGCAGATCATCACATTCATTATTATGACCTGAGAAATGTCAGCCAACCACTGCATGTGTTTAGCGGGCATAGGAAAGCTGTTTCGTATGTGAAATTCTTGTCTAACAATGAACTTTCTTCTGCATCCACTGACAGCACATTACGACTGTGGGATGTAAAGGAAAACCTGCCGTTGTGCACGTATAGAGGCCACATGAATGAGAAGAACTTTGTAGGTCTTGCAGTAAACAATGACTACATTGCTTGCGGTAGTGAGACAAACGAAGTGTTCGTTTATCACAAGGGTATCCCAAAACCTATGGCTTGGCATAAATTCGGCTCATCGGATTTAAACTACAACAACGAAGAAGACGATGGTGCAGGGTCATACTTTATCAGTGCCGTATGTTGGAAGAGGGATAGCCCGATGATACTGACGGCGAACAGTCAAGGAACGATTAAGGTTCTTGTACTTGCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000152 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009639 GO:0009640 GO:0009641 GO:0009642 GO:0009646 GO:0009647 GO:0009648 GO:0009649 GO:0009791 GO:0009812 GO:0009987 GO:0010119 GO:0010228 GO:0016567 GO:0016604 GO:0016740 GO:0019538 GO:0019787 GO:0022414 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0036211 GO:0042440 GO:0042752 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046283 GO:0046483 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080008 GO:0090304 GO:0140096 GO:1901360 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04115 ko04120 ko04712 map04115 map04120 map04712

Pfam Domains

Protein Families

WD40 zf-C3HC4_2

Protein Analysis

580

Amino Acids

66.12

Weight (kDa)

5.63

Isoelectric Point (pI)

53.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_2	PF13923	39 - 77	8.7e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	40 - 77	1.4e-06	Zinc finger, C3HC4 type (RING finger)
Beta-prop_WDR3_2nd	PF25172	312 - 521	1.2e-09	WDR3 second beta-propeller domain
Beta-prop_WDR5	PF25175	314 - 520	1.7e-21	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	315 - 423	2e-07	WDR3 first beta-propeller domain
Beta-prop_RIG_2nd	PF23775	318 - 420	8.6e-09	RIG second beta-propeller
Beta-prop_EML_2	PF23414	318 - 463	2.3e-06	Echinoderm microtubule-associated protein second beta-propeller
WD40_CDC20-Fz	PF24807	348 - 491	3.3e-14	CDC20/Fizzy WD40 domain
WD40_Gbeta	PF25391	354 - 488	3.1e-07	G protein beta WD-40 repeat protein
Beta-prop_THOC3	PF25174	357 - 425	6.3e-06	THOC3 beta-propeller domain
WD40_MABP1-WDR62_2nd	PF24782	370 - 482	6.8e-06	MABP1/WDR62 second WD40 domain
WD40_WDHD1_1st	PF24817	423 - 485	1.1e-06	WDHD1 first WD40 domain
Beta-prop_WDR3_1st	PF25173	424 - 511	1.8e-11	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	425 - 521	3.1e-06	CDC20/Fizzy WD40 domain
WD40_Prp19	PF24814	426 - 513	1.7e-08	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	426 - 577	1.1e-11	THOC3 beta-propeller domain
WD40	PF00400	442 - 478	6.9e-06	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32950 AT2G32950
fragaria_vesca	FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_5g22570 FvH4_5g22570
malus_domestica	MD06G1037700.v1.1 MD10G1328500.v1.1 MD15G1405100.v1.1 MD15G1405200.v1.1 MD16G1272200.v1.1
prunus_persica	Prupe.4G013500_v2.0.a1 Prupe.5G031300_v2.0.a1 Prupe.5G031300_v2.0.a1 Prupe.5G031300_v2.0.a1 Prupe.5G031300_v2.0.a1
pyrus_communis	pycom10g27830 pycom16g24110
rosa_chinensis	RchiOBHm_Chr5g0001791 RchiOBHm_Chr7g0210341
rosa_laevigata	RLG00000003045 RLG00000030973
rosa_multiflora	Rmu_co8137394.1_g000001 Rmu_sc0003807.1_g000002 Rmu_ssc0000237.1_g000012
rosa_roxburghii	Rroxscaffold_1G00071250 Rroxscaffold_1G00074540 Rroxscaffold_3G00248380
rosa_rugosa	Rorug04G0393100 Rorug04G0393200 Rorug04G0393300 Rorug07G0121200 Rorug07G0121200 Rorug07G0121300
rosa_samantha	Rh5AG014400 Rh5BG017800 Rh5CG015500 Rh5DG015900 Rh7AG253900 Rh7BG248800 Rh7CG270700 Rh7DG261400
rosa_wichuraiana	Rw5G001390 Rw7G021640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1455
AccII	CGCG	2 cut(s)	68, 149
AclWI	GGATC	3 cut(s)	331, 1065, 1229
AcoI	YGGCCR	1 cut(s)	166
AcsI	RAATTY	3 cut(s)	944, 1373, 1592
AcuI	CTGAAG	2 cut(s)	771, 1053
AdeI	CACNNNGTG	1 cut(s)	913
AfaI	GTAC	5 cut(s)	726, 753, 935, 1103, 1731
AfiI	CCNNNNNNNGG	3 cut(s)	28, 230, 1668
AflIII	ACRYGT	1 cut(s)	147
AgsI	TTSAA	7 cut(s)	289, 410, 530, 802, 899, 1227, 1242
AhdI	GACNNNNNGTC	1 cut(s)	61
AjnI	CCWGG	1 cut(s)	889
AluBI	AGCT	9 cut(s)	43, 174, 186, 385, 433, 476, 1092, 1208, 1358
AluI	AGCT	9 cut(s)	43, 174, 186, 385, 433, 476, 1092, 1208, 1358
Alw21I	GWGCWC	2 cut(s)	616, 1460
Alw26I	GTCTC	5 cut(s)	405, 511, 556, 948, 1529
Alw44I	GTGCAC	2 cut(s)	612, 1456
AlwI	GGATC	3 cut(s)	331, 1065, 1229
AoxI	GGCC	4 cut(s)	166, 762, 892, 1468
ApaLI	GTGCAC	2 cut(s)	612, 1456
ApeKI	GCWGC	4 cut(s)	186, 363, 394, 433
ApoI	RAATTY	3 cut(s)	944, 1373, 1592
AspLEI	GCGC	1 cut(s)	631
AspS9I	GGNCC	1 cut(s)	11
AsuHPI	GGTGA	3 cut(s)	148, 235, 590
AvaII	GGWCC	1 cut(s)	11
BaeGI	GKGCMC	2 cut(s)	616, 1460
BaeI	ACNNNNGTAYC	2 cut(s)	1549, 1582
BbsI	GAAGAC	2 cut(s)	906, 1635
Bbv12I	GWGCWC	2 cut(s)	616, 1460
BbvI	GCAGC	4 cut(s)	173, 350, 381, 420
BccI	CCATC	3 cut(s)	304, 1174, 1628
BceAI	ACGGC	5 cut(s)	90, 313, 1435, 1646, 1713
BcgI	CGANNNNNNTGC	2 cut(s)	42, 76
BciT130I	CCWGG	1 cut(s)	891
BciVI	GTATCC	1 cut(s)	1577
BclI	TGATCA	1 cut(s)	583
BcoDI	GTCTC	5 cut(s)	405, 511, 556, 948, 1529
BfaI	CTAG	1 cut(s)	1122
BfmI	CTRYAG	1 cut(s)	1281
BfuAI	ACCTGC	1 cut(s)	1455
BfuI	GTATCC	1 cut(s)	1577
BisI	GCNGC	9 cut(s)	51, 78, 166, 187, 344, 364, 395, 434, 833
BlsI	GCNGC	9 cut(s)	52, 79, 167, 188, 345, 365, 396, 435, 834
BmcAI	AGTACT	1 cut(s)	726
Bme1390I	CCNGG	1 cut(s)	891
Bme18I	GGWCC	1 cut(s)	11
BmeRI	GACNNNNNGTC	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	11
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	1 cut(s)	891
BmsI	GCATC	4 cut(s)	346, 715, 1002, 1412
BpiI	GAAGAC	2 cut(s)	906, 1635
BplI	GAGNNNNNCTC	2 cut(s)	998, 1030
BpmI	CTGGAG	1 cut(s)	59
BpuEI	CTTGAG	1 cut(s)	1108
BsaAI	YACGTR	1 cut(s)	1461
BsaBI	GATNNNNATC	1 cut(s)	885
BsaJI	CCNNGG	3 cut(s)	27, 66, 1014
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 230, 1668
Bse1I	ACTGG	1 cut(s)	42
Bse3DI	GCAATG	2 cut(s)	601, 1518
Bse8I	GATNNNNATC	1 cut(s)	885
BseBI	CCWGG	1 cut(s)	891
BseDI	CCNNGG	3 cut(s)	27, 66, 1014
BseGI	GGATG	5 cut(s)	315, 706, 1162, 1403, 1438
BseJI	GATNNNNATC	1 cut(s)	885
BseLI	CCNNNNNNNGG	3 cut(s)	28, 230, 1668
BseMI	GCAATG	2 cut(s)	601, 1518
BseMII	CTCAG	2 cut(s)	557, 1301
BseNI	ACTGG	1 cut(s)	42
BseRI	GAGGAG	1 cut(s)	1205
BseSI	GKGCMC	2 cut(s)	616, 1460
BseXI	GCAGC	4 cut(s)	173, 350, 381, 420
BseYI	CCCAGC	1 cut(s)	977
BsgI	GTGCAG	2 cut(s)	766, 1659
Bsh1236I	CGCG	2 cut(s)	68, 149
Bsh1285I	CGRYCG	1 cut(s)	27
BshFI	GGCC	4 cut(s)	168, 764, 894, 1470
BsiEI	CGRYCG	1 cut(s)	27
BsiHKAI	GWGCWC	2 cut(s)	616, 1460
BsiSI	CCGG	1 cut(s)	101
BslFI	GGGAC	1 cut(s)	158
BslI	CCNNNNNNNGG	3 cut(s)	28, 230, 1668
BsmAI	GTCTC	5 cut(s)	405, 511, 556, 948, 1529
BsmBI	CGTCTC	2 cut(s)	511, 948
BsmFI	GGGAC	1 cut(s)	158
BsnI	GGCC	4 cut(s)	168, 764, 894, 1470
Bsp1286I	GDGCHC	2 cut(s)	616, 1460
Bsp143I	GATC	8 cut(s)	323, 459, 478, 583, 949, 1070, 1234, 1285
BspANI	GGCC	4 cut(s)	168, 764, 894, 1470
BspCNI	CTCAG	2 cut(s)	558, 1302
BspFNI	CGCG	2 cut(s)	68, 149
BspLI	GGNNCC	1 cut(s)	96
BspMAI	CTGCAG	1 cut(s)	1285
BspMI	ACCTGC	1 cut(s)	1455
BspPI	GGATC	3 cut(s)	331, 1065, 1229
BsrDI	GCAATG	2 cut(s)	601, 1518
BsrI	ACTGG	1 cut(s)	42
BssECI	CCNNGG	3 cut(s)	27, 66, 1014
BssMI	GATC	8 cut(s)	323, 459, 478, 583, 949, 1070, 1234, 1285
Bst2UI	CCWGG	1 cut(s)	891
Bst6I	CTCTTC	6 cut(s)	405, 408, 413, 737, 1050, 1667
BstAPI	GCANNNNNTGC	1 cut(s)	352
BstBAI	YACGTR	1 cut(s)	1461
BstC8I	GCNNGC	5 cut(s)	163, 627, 1206, 1346, 1525
BstDEI	CTNAG	3 cut(s)	566, 1079, 1310
BstDSI	CCRYGG	2 cut(s)	27, 66
BstF5I	GGATG	5 cut(s)	315, 706, 1162, 1403, 1438
BstFNI	CGCG	2 cut(s)	68, 149
BstHHI	GCGC	1 cut(s)	631
BstKTI	GATC	8 cut(s)	326, 462, 481, 586, 952, 1073, 1237, 1288
BstMAI	GTCTC	5 cut(s)	405, 511, 556, 948, 1529
BstMBI	GATC	8 cut(s)	323, 459, 478, 583, 949, 1070, 1234, 1285
BstMCI	CGRYCG	1 cut(s)	27
BstMWI	GCNNNNNNNGC	9 cut(s)	74, 171, 186, 334, 343, 352, 391, 832, 1201
BstNI	CCWGG	1 cut(s)	891
BstNSI	RCATGY	1 cut(s)	1337
BstSCI	CCNGG	1 cut(s)	889
BstSFI	CTRYAG	1 cut(s)	1281
BstSLI	GKGCMC	2 cut(s)	616, 1460
BstUI	CGCG	2 cut(s)	68, 149
BstV1I	GCAGC	4 cut(s)	173, 350, 381, 420
BstV2I	GAAGAC	2 cut(s)	906, 1635
BsuI	GTATCC	1 cut(s)	1577
BsuRI	GGCC	4 cut(s)	168, 764, 894, 1470
BtgI	CCRYGG	2 cut(s)	27, 66
BtsCI	GGATG	5 cut(s)	315, 706, 1162, 1403, 1438
BtsI	GCAGTG	2 cut(s)	156, 1328
BtsIMutI	CAGTG	7 cut(s)	156, 564, 738, 1042, 1328, 1407, 1663
BveI	ACCTGC	1 cut(s)	1455
Cac8I	GCNNGC	5 cut(s)	163, 627, 1206, 1346, 1525
CfoI	GCGC	1 cut(s)	631
Cfr13I	GGNCC	1 cut(s)	11
Cfr42I	CCGCGG	1 cut(s)	69
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	5 cut(s)	725, 752, 934, 1102, 1730
CviAII	CATG	7 cut(s)	356, 454, 463, 502, 1196, 1334, 1474
CviQI	GTAC	5 cut(s)	725, 752, 934, 1102, 1730
DdeI	CTNAG	3 cut(s)	566, 1079, 1310
DpnI	GATC	8 cut(s)	325, 461, 480, 585, 951, 1072, 1236, 1287
DpnII	GATC	8 cut(s)	323, 459, 478, 583, 949, 1070, 1234, 1285
DraI	TTTAAA	1 cut(s)	1611
DraIII	CACNNNGTG	1 cut(s)	913
DriI	GACNNNNNGTC	1 cut(s)	61
EaeI	YGGCCR	1 cut(s)	166
Eam1104I	CTCTTC	6 cut(s)	405, 408, 413, 737, 1050, 1667
Eam1105I	GACNNNNNGTC	1 cut(s)	61
EarI	CTCTTC	6 cut(s)	405, 408, 413, 737, 1050, 1667
EciI	GGCGGA	1 cut(s)	87
Eco147I	AGGCCT	1 cut(s)	894
Eco32I	GATATC	2 cut(s)	1039, 1062
Eco47I	GGWCC	1 cut(s)	11
Eco57I	CTGAAG	2 cut(s)	771, 1053
EcoRII	CCWGG	1 cut(s)	889
EcoRV	GATATC	2 cut(s)	1039, 1062
EcoT22I	ATGCAT	2 cut(s)	131, 708
Esp3I	CGTCTC	2 cut(s)	511, 948
FaeI	CATG	7 cut(s)	359, 457, 466, 505, 1199, 1337, 1477
FalI	AAGNNNNNCTT	2 cut(s)	465, 497
FaqI	GGGAC	1 cut(s)	158
FatI	CATG	7 cut(s)	355, 453, 462, 501, 1195, 1333, 1473
FauI	CCCGC	1 cut(s)	1337
FauNDI	CATATG	1 cut(s)	862
FbaI	TGATCA	1 cut(s)	583
Fnu4HI	GCNGC	9 cut(s)	51, 78, 166, 187, 344, 364, 395, 434, 833
FokI	GGATG	5 cut(s)	322, 693, 1169, 1390, 1445
Fsp4HI	GCNGC	9 cut(s)	51, 78, 166, 187, 344, 364, 395, 434, 833
FspBI	CTAG	1 cut(s)	1122
GlaI	GCGC	1 cut(s)	630
GluI	GCNGC	9 cut(s)	51, 78, 166, 187, 344, 364, 395, 434, 833
GsaI	CCCAGC	1 cut(s)	981
GsuI	CTGGAG	1 cut(s)	59
HaeIII	GGCC	4 cut(s)	168, 764, 894, 1470
HapII	CCGG	1 cut(s)	101
HgaI	GACGC	1 cut(s)	155
HhaI	GCGC	1 cut(s)	631
Hin1II	CATG	7 cut(s)	359, 457, 466, 505, 1199, 1337, 1477
Hin6I	GCGC	1 cut(s)	629
HinP1I	GCGC	1 cut(s)	629
HincII	GTYRAC	1 cut(s)	236
HindII	GTYRAC	1 cut(s)	236
HinfI	GANTC	5 cut(s)	56, 207, 440, 446, 857
HpaII	CCGG	1 cut(s)	101
HphI	GGTGA	3 cut(s)	148, 235, 590
Hpy166II	GTNNAC	5 cut(s)	236, 614, 1104, 1458, 1507
Hpy188I	TCNGA	8 cut(s)	87, 123, 206, 309, 445, 790, 1173, 1606
Hpy188III	TCNNGA	6 cut(s)	22, 211, 407, 482, 953, 1254
Hpy8I	GTNNAC	5 cut(s)	236, 614, 1104, 1458, 1507
HpyAV	CCTTC	3 cut(s)	82, 383, 1248
HpyCH4IV	ACGT	2 cut(s)	520, 1460
HpyF10VI	GCNNNNNNNGC	9 cut(s)	74, 171, 186, 334, 343, 352, 391, 832, 1201
HpyF3I	CTNAG	3 cut(s)	566, 1079, 1310
HpySE526I	ACGT	2 cut(s)	520, 1460
Hsp92II	CATG	7 cut(s)	359, 457, 466, 505, 1199, 1337, 1477
HspAI	GCGC	1 cut(s)	629
Ksp22I	TGATCA	1 cut(s)	583
KspI	CCGCGG	1 cut(s)	69
Kzo9I	GATC	8 cut(s)	323, 459, 478, 583, 949, 1070, 1234, 1285
LmnI	GCTCC	5 cut(s)	40, 100, 334, 430, 1192
Lsp1109I	GCAGC	4 cut(s)	173, 350, 381, 420
LweI	GCATC	4 cut(s)	346, 715, 1002, 1412
MaeI	CTAG	1 cut(s)	1122
MaeII	ACGT	2 cut(s)	520, 1460
MaeIII	GTNAC	6 cut(s)	193, 712, 818, 1127, 1144, 1159
MalI	GATC	8 cut(s)	325, 461, 480, 585, 951, 1072, 1236, 1287
MboI	GATC	8 cut(s)	323, 459, 478, 583, 949, 1070, 1234, 1285
MfeI	CAATTG	1 cut(s)	962
MhlI	GDGCHC	2 cut(s)	616, 1460
MluI	ACGCGT	1 cut(s)	147
MlyI	GAGTC	2 cut(s)	50, 449
MmeI	TCCRAC	2 cut(s)	312, 1649
Mph1103I	ATGCAT	2 cut(s)	131, 708
MseI	TTAA	4 cut(s)	492, 1023, 1610, 1719
MslI	CAYNNNNRTG	3 cut(s)	134, 1302, 1476
MspA1I	CMGCKG	2 cut(s)	68, 186
MspI	CCGG	1 cut(s)	101
MspR9I	CCNGG	1 cut(s)	891
MunI	CAATTG	1 cut(s)	962
MvaI	CCWGG	1 cut(s)	891
MvnI	CGCG	2 cut(s)	68, 149
MwoI	GCNNNNNNNGC	9 cut(s)	74, 171, 186, 334, 343, 352, 391, 832, 1201
NdeI	CATATG	1 cut(s)	862
NdeII	GATC	8 cut(s)	323, 459, 478, 583, 949, 1070, 1234, 1285
NlaIII	CATG	7 cut(s)	359, 457, 466, 505, 1199, 1337, 1477
NlaIV	GGNNCC	1 cut(s)	96
NmuCI	GTSAC	2 cut(s)	193, 1127
NsiI	ATGCAT	2 cut(s)	131, 708
NspI	RCATGY	1 cut(s)	1337
PceI	AGGCCT	1 cut(s)	894
PcsI	WCGNNNNNNNCGW	2 cut(s)	1548, 1629
PfeI	GAWTC	3 cut(s)	207, 446, 857
PkrI	GCNGC	9 cut(s)	52, 79, 167, 188, 345, 365, 396, 435, 834
PleI	GAGTC	2 cut(s)	50, 448
PpsI	GAGTC	2 cut(s)	50, 448
Ppu21I	YACGTR	1 cut(s)	1461
Psp6I	CCWGG	1 cut(s)	889
PspFI	CCCAGC	1 cut(s)	977
PspGI	CCWGG	1 cut(s)	889
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	1 cut(s)	11
PstI	CTGCAG	1 cut(s)	1285
PvuII	CAGCTG	1 cut(s)	186
RsaI	GTAC	5 cut(s)	726, 753, 935, 1103, 1731
RsaNI	GTAC	5 cut(s)	725, 752, 934, 1102, 1730
RseI	CAYNNNNRTG	3 cut(s)	134, 1302, 1476
SacII	CCGCGG	1 cut(s)	69
SaqAI	TTAA	4 cut(s)	492, 1023, 1610, 1719
SatI	GCNGC	9 cut(s)	51, 78, 166, 187, 344, 364, 395, 434, 833
Sau3AI	GATC	8 cut(s)	323, 459, 478, 583, 949, 1070, 1234, 1285
Sau96I	GGNCC	1 cut(s)	11
ScaI	AGTACT	1 cut(s)	726
SchI	GAGTC	2 cut(s)	50, 449
ScrFI	CCNGG	1 cut(s)	891
SduI	GDGCHC	2 cut(s)	616, 1460
SfaNI	GCATC	4 cut(s)	346, 715, 1002, 1412
SfcI	CTRYAG	1 cut(s)	1281
Sfr303I	CCGCGG	1 cut(s)	69
SgrBI	CCGCGG	1 cut(s)	69
SinI	GGWCC	1 cut(s)	11
SmiMI	CAYNNNNRTG	3 cut(s)	134, 1302, 1476
SmlI	CTYRAG	1 cut(s)	1087
SmoI	CTYRAG	1 cut(s)	1087
SseBI	AGGCCT	1 cut(s)	894
SspMI	CTAG	1 cut(s)	1122
StuI	AGGCCT	1 cut(s)	894
StyD4I	CCNGG	1 cut(s)	889
TaiI	ACGT	2 cut(s)	523, 1463
TaqI	TCGA	4 cut(s)	276, 449, 952, 1053
TatI	WGTACW	5 cut(s)	724, 751, 933, 1101, 1729
TauI	GCSGC	5 cut(s)	53, 80, 168, 346, 835
TfiI	GAWTC	3 cut(s)	207, 446, 857
Tru1I	TTAA	4 cut(s)	492, 1023, 1610, 1719
Tru9I	TTAA	4 cut(s)	492, 1023, 1610, 1719
TscAI	CASTG	7 cut(s)	163, 564, 738, 1049, 1335, 1414, 1663
TseFI	GTSAC	2 cut(s)	193, 1127
TseI	GCWGC	4 cut(s)	186, 363, 394, 433
Tsp45I	GTSAC	2 cut(s)	193, 1127
TspDTI	ATGAA	6 cut(s)	849, 1041, 1212, 1286, 1404, 1490
TspRI	CASTG	7 cut(s)	163, 564, 738, 1049, 1335, 1414, 1663
VneI	GTGCAC	2 cut(s)	612, 1456
VpaK11BI	GGWCC	1 cut(s)	11
XapI	RAATTY	3 cut(s)	944, 1373, 1592
XceI	RCATGY	1 cut(s)	1337
XspI	CTAG	1 cut(s)	1122
ZrmI	AGTACT	1 cut(s)	726
Zsp2I	ATGCAT	2 cut(s)	131, 708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.