Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001361

Physical Location & Seq

Genomic Coordinates Reverse (-)

95496425 .. 95500861

Gene Structure 4437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00074540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGGTGGAGGACCAATGTTCCCGACCGTGGAGAAACTGGAGCTAATGGCGGCAGACTCATCGTCCGCGGAAACGGCGGCGTTTCAGAAGGAGGCTCCGCCGGACAAGGACTTGATGTGTCCGATATGCATACAGGTGATAAGGGACGCGTTCCTCACTGCTTGCGGCCATAGCTTCTGCCACAGCTGCATAGTCACTCATCTCGGAATCAAGAGCGACTGTCCTTGCTGTGGTCAACACCTCACCCCCAACCTAATCTTTCCCAATTTCTTGCTCGACAAGTTGTTGAAAAAATCTATGGCGTATCGGATGGAGAGGACAGGATCGCCGTTGGAGCATCTGCGGCAGAAATTGCATGAGACAGGGCTGCGATATGTCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000152 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009639 GO:0009640 GO:0009641 GO:0009642 GO:0009646 GO:0009647 GO:0009648 GO:0009649 GO:0009791 GO:0009812 GO:0009987 GO:0010119 GO:0010228 GO:0016567 GO:0016604 GO:0016740 GO:0019538 GO:0019787 GO:0022414 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0036211 GO:0042440 GO:0042752 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046283 GO:0046483 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080008 GO:0090304 GO:0140096 GO:1901360 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04115 ko04120 ko04712 map04115 map04120 map04712

Pfam Domains

Protein Families

WD40 zf-C3HC4_2

Protein Analysis

127

Amino Acids

14.07

Weight (kDa)

6.98

Isoelectric Point (pI)

29.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	37 - 81	1.1e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	39 - 77	8.6e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	39 - 77	4.3e-06	Ring finger domain
zf-C3HC4	PF00097	40 - 77	1.4e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	40 - 71	7.2e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32950 AT2G32950
fragaria_vesca	FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_3g01260 FvH4_5g22570 FvH4_5g22570
malus_domestica	MD06G1037700.v1.1 MD10G1328500.v1.1 MD15G1405100.v1.1 MD15G1405200.v1.1 MD16G1272200.v1.1
prunus_persica	Prupe.4G013500_v2.0.a1 Prupe.5G031300_v2.0.a1 Prupe.5G031300_v2.0.a1 Prupe.5G031300_v2.0.a1 Prupe.5G031300_v2.0.a1
pyrus_communis	pycom10g27830 pycom16g24110
rosa_chinensis	RchiOBHm_Chr5g0001791 RchiOBHm_Chr7g0210341
rosa_laevigata	RLG00000003045 RLG00000030973
rosa_multiflora	Rmu_co8137394.1_g000001 Rmu_sc0003807.1_g000002 Rmu_ssc0000237.1_g000012
rosa_roxburghii	Rroxscaffold_1G00071250 Rroxscaffold_1G00074540 Rroxscaffold_3G00248380
rosa_rugosa	Rorug04G0393100 Rorug04G0393200 Rorug04G0393300 Rorug07G0121200 Rorug07G0121200 Rorug07G0121300
rosa_samantha	Rh5AG014400 Rh5BG017800 Rh5CG015500 Rh5DG015900 Rh7AG253900 Rh7BG248800 Rh7CG270700 Rh7DG261400
rosa_wichuraiana	Rw5G001390 Rw7G021640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	68, 149
AciI	CCGC	7 cut(s)	50, 66, 68, 77, 98, 165, 343
AclWI	GGATC	1 cut(s)	331
AcoI	YGGCCR	1 cut(s)	166
AfiI	CCNNNNNNNGG	2 cut(s)	28, 230
AflIII	ACRYGT	1 cut(s)	147
AgsI	TTSAA	1 cut(s)	289
AhdI	GACNNNNNGTC	1 cut(s)	61
AluBI	AGCT	3 cut(s)	43, 174, 186
AluI	AGCT	3 cut(s)	43, 174, 186
Alw26I	GTCTC	1 cut(s)	353
AlwI	GGATC	1 cut(s)	331
AoxI	GGCC	1 cut(s)	166
ApeKI	GCWGC	2 cut(s)	186, 367
AspS9I	GGNCC	1 cut(s)	11
AsuHPI	GGTGA	2 cut(s)	148, 235
AvaII	GGWCC	1 cut(s)	11
BbvI	GCAGC	2 cut(s)	173, 354
BccI	CCATC	1 cut(s)	304
BceAI	ACGGC	2 cut(s)	90, 313
BcgI	CGANNNNNNTGC	2 cut(s)	42, 76
BcoDI	GTCTC	1 cut(s)	353
BisI	GCNGC	6 cut(s)	51, 78, 166, 187, 344, 368
BlsI	GCNGC	6 cut(s)	52, 79, 167, 188, 345, 369
Bme18I	GGWCC	1 cut(s)	11
BmeRI	GACNNNNNGTC	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	11
BmiI	GGNNCC	1 cut(s)	96
BmsI	GCATC	1 cut(s)	346
BpmI	CTGGAG	1 cut(s)	59
BsaJI	CCNNGG	2 cut(s)	27, 66
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 230
Bse1I	ACTGG	1 cut(s)	42
BseDI	CCNNGG	2 cut(s)	27, 66
BseGI	GGATG	1 cut(s)	315
BseLI	CCNNNNNNNGG	2 cut(s)	28, 230
BseNI	ACTGG	1 cut(s)	42
BseXI	GCAGC	2 cut(s)	173, 354
Bsh1236I	CGCG	2 cut(s)	68, 149
Bsh1285I	CGRYCG	1 cut(s)	27
BshFI	GGCC	1 cut(s)	168
BsiEI	CGRYCG	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	101
BslFI	GGGAC	1 cut(s)	158
BslI	CCNNNNNNNGG	2 cut(s)	28, 230
BsmAI	GTCTC	1 cut(s)	353
BsmFI	GGGAC	1 cut(s)	158
BsnI	GGCC	1 cut(s)	168
Bsp143I	GATC	1 cut(s)	323
BspACI	CCGC	7 cut(s)	50, 66, 68, 77, 98, 165, 343
BspANI	GGCC	1 cut(s)	168
BspFNI	CGCG	2 cut(s)	68, 149
BspLI	GGNNCC	1 cut(s)	96
BspPI	GGATC	1 cut(s)	331
BsrI	ACTGG	1 cut(s)	42
BssECI	CCNNGG	2 cut(s)	27, 66
BssMI	GATC	1 cut(s)	323
Bst4CI	ACNGT	2 cut(s)	28, 221
BstAPI	GCANNNNNTGC	1 cut(s)	352
BstC8I	GCNNGC	1 cut(s)	163
BstDSI	CCRYGG	2 cut(s)	27, 66
BstF5I	GGATG	1 cut(s)	315
BstFNI	CGCG	2 cut(s)	68, 149
BstKTI	GATC	1 cut(s)	326
BstMAI	GTCTC	1 cut(s)	353
BstMBI	GATC	1 cut(s)	323
BstMCI	CGRYCG	1 cut(s)	27
BstMWI	GCNNNNNNNGC	6 cut(s)	74, 171, 186, 334, 343, 352
BstUI	CGCG	2 cut(s)	68, 149
BstV1I	GCAGC	2 cut(s)	173, 354
BsuRI	GGCC	1 cut(s)	168
BtgI	CCRYGG	2 cut(s)	27, 66
BtsCI	GGATG	1 cut(s)	315
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	1 cut(s)	156
Cac8I	GCNNGC	1 cut(s)	163
Cfr13I	GGNCC	1 cut(s)	11
Cfr42I	CCGCGG	1 cut(s)	69
CseI	GACGC	1 cut(s)	155
CviAII	CATG	1 cut(s)	356
CviJI	RGCY	6 cut(s)	43, 95, 168, 174, 186, 367
CviKI_1	RGCY	6 cut(s)	43, 95, 168, 174, 186, 367
DpnI	GATC	1 cut(s)	325
DpnII	GATC	1 cut(s)	323
DriI	GACNNNNNGTC	1 cut(s)	61
EaeI	YGGCCR	1 cut(s)	166
Eam1105I	GACNNNNNGTC	1 cut(s)	61
EciI	GGCGGA	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	11
EcoT22I	ATGCAT	1 cut(s)	131
FaeI	CATG	1 cut(s)	359
FaiI	YATR	7 cut(s)	127, 131, 171, 191, 299, 357, 375
FaqI	GGGAC	1 cut(s)	158
FatI	CATG	1 cut(s)	355
Fnu4HI	GCNGC	6 cut(s)	51, 78, 166, 187, 344, 368
FokI	GGATG	1 cut(s)	322
Fsp4HI	GCNGC	6 cut(s)	51, 78, 166, 187, 344, 368
GluI	GCNGC	6 cut(s)	51, 78, 166, 187, 344, 368
GsuI	CTGGAG	1 cut(s)	59
HaeIII	GGCC	1 cut(s)	168
HapII	CCGG	1 cut(s)	101
HgaI	GACGC	1 cut(s)	155
Hin1II	CATG	1 cut(s)	359
HincII	GTYRAC	1 cut(s)	236
HindII	GTYRAC	1 cut(s)	236
HinfI	GANTC	2 cut(s)	56, 207
HpaII	CCGG	1 cut(s)	101
HphI	GGTGA	2 cut(s)	148, 235
Hpy166II	GTNNAC	1 cut(s)	236
Hpy188I	TCNGA	4 cut(s)	87, 123, 206, 309
Hpy188III	TCNNGA	2 cut(s)	22, 211
Hpy8I	GTNNAC	1 cut(s)	236
HpyAV	CCTTC	1 cut(s)	82
HpyCH4III	ACNGT	2 cut(s)	28, 221
HpyCH4V	TGCA	3 cut(s)	129, 189, 355
HpyF10VI	GCNNNNNNNGC	6 cut(s)	74, 171, 186, 334, 343, 352
Hsp92II	CATG	1 cut(s)	359
KspI	CCGCGG	1 cut(s)	69
Kzo9I	GATC	1 cut(s)	323
LmnI	GCTCC	3 cut(s)	40, 100, 334
LpnPI	CCDG	5 cut(s)	23, 114, 119, 306, 348
Lsp1109I	GCAGC	2 cut(s)	173, 354
LweI	GCATC	1 cut(s)	346
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	1 cut(s)	325
MboI	GATC	1 cut(s)	323
MluCI	AATT	3 cut(s)	265, 350, 379
MluI	ACGCGT	1 cut(s)	147
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	1 cut(s)	312
MnlI	CCTC	4 cut(s)	85, 164, 251, 309
Mph1103I	ATGCAT	1 cut(s)	131
MslI	CAYNNNNRTG	1 cut(s)	134
MspA1I	CMGCKG	2 cut(s)	68, 186
MspI	CCGG	1 cut(s)	101
MvnI	CGCG	2 cut(s)	68, 149
MwoI	GCNNNNNNNGC	6 cut(s)	74, 171, 186, 334, 343, 352
NdeII	GATC	1 cut(s)	323
NlaIII	CATG	1 cut(s)	359
NlaIV	GGNNCC	1 cut(s)	96
NmuCI	GTSAC	1 cut(s)	193
NsiI	ATGCAT	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	207
PkrI	GCNGC	6 cut(s)	52, 79, 167, 188, 345, 369
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	1 cut(s)	11
PvuII	CAGCTG	1 cut(s)	186
RseI	CAYNNNNRTG	1 cut(s)	134
SacII	CCGCGG	1 cut(s)	69
SatI	GCNGC	6 cut(s)	51, 78, 166, 187, 344, 368
Sau3AI	GATC	1 cut(s)	323
Sau96I	GGNCC	1 cut(s)	11
SchI	GAGTC	1 cut(s)	50
SetI	ASST	6 cut(s)	45, 138, 176, 188, 243, 255
SfaNI	GCATC	1 cut(s)	346
Sfr303I	CCGCGG	1 cut(s)	69
SgrBI	CCGCGG	1 cut(s)	69
SinI	GGWCC	1 cut(s)	11
SmiMI	CAYNNNNRTG	1 cut(s)	134
Sse9I	AATT	3 cut(s)	265, 350, 379
SsiI	CCGC	7 cut(s)	50, 66, 68, 77, 98, 165, 343
TaaI	ACNGT	2 cut(s)	28, 221
TaqI	TCGA	1 cut(s)	276
TasI	AATT	3 cut(s)	265, 350, 379
TauI	GCSGC	4 cut(s)	53, 80, 168, 346
TfiI	GAWTC	1 cut(s)	207
TscAI	CASTG	1 cut(s)	163
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	2 cut(s)	186, 367
Tsp45I	GTSAC	1 cut(s)	193
TspRI	CASTG	1 cut(s)	163
VpaK11BI	GGWCC	1 cut(s)	11
Zsp2I	ATGCAT	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.