Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0008811

Physical Location & Seq

Genomic Coordinates Forward (+)

22364021 .. 22370203

Gene Structure 6183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG248900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1614 bp

ATGAACGACGGAGGTAATAACCAGGCGGACGAGTCTCCGGTGAGAAAGACCAGAAGAGGACGCGGAGGAAGAGGAGGAGGAGGAGGAGTACGGGAACAACACCACCCTTCTCTCCAAATCGACGATGCATTAAAACTCAACGATCTTCAGTCACCTTTGACTTGTCAGCCTCAGACTCATGAACCCACCACCACCTCCACACCCAGAAACCACAGAAATCCGAGGTCGGCATCCAGGAATCGAGGTGCCCATGTATTCAAACCTCGGTTTGTCAAGAAATCTGAGTTGGGTTCTTCTTCTTCTTCGAATGGCCAACTGGGTTCTTCTTCGAATGAGCAACAGCAAGTGGGTTCTTTGAATGATGAGGTGGGGTCTCTGAGTATTGGTGAGGGAGAAAGTGGGCAGCAAGCGAAACAAGAAGAAGAAAAACATGAAGAAAAGAGAGTTGTGGCTAGTGTAGAGAATGCTGCTGAGGTTTCTGAGTGTGGGAAAGGGGAGGATGCTGTGACAAGATTGGAAGAGCTGCAGCGCGGTGTTGAAGAGCCGGAGTTGTCAGAAGAGCAGCTGAGGATCAATGATCAAGCTCAGGAGGATGAGTTGCTTGCTATGGAGTCCATTTTCGGAGACAACGTTTTCATCCTTGAAAGACAACGAGGCCTTCGATGTTTTCAGATTCATATACACATTGAAGCTCCTGGTGAAATTGCTGTTTCTACTAAGTTGAATTCATCTAGTGACCTTAAGTCCACAAGTAGTAGTTCTGATGACTTCTCATACTCCTTCACAGTCCAGCATCTTCCACCAATTATGTTGACATGTGCGTTACCCAAATCATACCCAAGCCACCAACCACCTTATTTCACACTATCTGTTCAATGGTTGGATTCTATTAAAATTTCCAATTTGTGTTCCATGCTGGACTCATTATGGATGGACCAACAAGGACAGGAGGTTATATACCAATGGGTGGAATGGCTACAAAGTTCTTCTCTTTCTCATCTTGGGTTTAATAAGGAAATAATGCTTGGTCCTTATGGTATTAGAGATGCTGGAGATAGACGTGCACTCACAGGAAGTGTATCCCCGGATGCAGATATTCCTTTTCTTCGAAGTTACAATAATGATAGACTCCATGAGAACTTCCGCAATAGTTTGCAGGAATGCTGCATCTGTTTTACTGAGTATGCAGGCGCTGAGTTTGTCAGGCTGCCTTGCAAGCATTTCTTCTGTTGGAAATGCATGAAGACTTATTCTGACATGCATGTCAAGGAAGGTACCATCACCAAATTGAACTGTCCTGATGCAAAATGTCAGGGTATGATCCCGCCAGGTTTGCTAAAACGATTGCTTGGCGATGAAGAGTTTGAACGTTGGGAGTCCTTGATGTTAGAAAAAACACTCCAGTCAATGTCTGATATTGTGTCTTGTCCAAGATGTAAAACACCCTGCATAGAAGATGAAGATGATCATGCCCAATGCTCAAAGTGCTTCTTTAGCTTCTGTACACTTTGCTTGGAGCGGCGCCATGTGGGTGTTCAATGTATGACACCAGAAATGAAGCTCCGTATCCTCCAGGTGAAGTTATTCTTTTCACTTCAAATCATTTCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006464 GO:0006807 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0023051 GO:0023052 GO:0030162 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0033143 GO:0035257 GO:0035258 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051427 GO:0051716 GO:0060255 GO:0060765 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1990234 GO:2000058 GO:2000060 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RWD zf-C3HC4

Protein Analysis

537

Amino Acids

60.31

Weight (kDa)

5.49

Isoelectric Point (pI)

61.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RWD	PF05773	194 - 328	1e-23	RWD domain
zf-RING_2	PF13639	386 - 423	4.3e-06	Ring finger domain
IBR	PF01485	456 - 514	1.8e-09	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32340
fragaria_vesca	FvH4_5g22580
malus_domestica	MD06G1037600.v1.1
prunus_persica	Prupe.5G031400_v2.0.a1
pyrus_communis	pycom06g03120 pycom06g03130
rosa_chinensis	RchiOBHm_Chr7g0210351
rosa_laevigata	RLG00000003044
rosa_multiflora	Rmu_sc0003807.1_g000003
rosa_roxburghii	Rroxscaffold_1G00030310 Rroxscaffold_1G00030320 Rroxscaffold_1G00030790 Rroxscaffold_1G00030800 Rroxscaffold_1G00038480 Rroxscaffold_3G00248360 Rroxscaffold_5G00369280
rosa_rugosa	Rorug07G0121300
rosa_samantha	Rh2BG360900 Rh7AG254000 Rh7BG248900 Rh7CG270800 Rh7DG261500
rosa_wichuraiana	Rw7G021650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1262
Acc65I	GGTACC	1 cut(s)	1274
AccB1I	GGYRCC	3 cut(s)	245, 1274, 1521
AccB7I	CCANNNNNTGG	1 cut(s)	967
AccBSI	CCGCTC	1 cut(s)	1519
AccII	CGCG	2 cut(s)	63, 531
AciI	CCGC	6 cut(s)	26, 63, 531, 1144, 1325, 1519
AclI	AACGTT	2 cut(s)	630, 1369
AclWI	GGATC	2 cut(s)	578, 1315
AcoI	YGGCCR	1 cut(s)	310
AcsI	RAATTY	2 cut(s)	724, 894
AcuI	CTGAAG	1 cut(s)	131
AcyI	GRCGYC	1 cut(s)	1522
AfaI	GTAC	3 cut(s)	90, 1276, 1504
AfiI	CCNNNNNNNGG	1 cut(s)	967
AflII	CTTAAG	1 cut(s)	740
AflIII	ACRYGT	1 cut(s)	815
AhdI	GACNNNNNGTC	1 cut(s)	742
AjiI	CACGTC	1 cut(s)	1061
AjnI	CCWGG	5 cut(s)	21, 233, 694, 1327, 1572
AjuI	GAANNNNNNNTTGG	4 cut(s)	269, 301, 1008, 1040
AluBI	AGCT	6 cut(s)	523, 565, 584, 692, 1497, 1561
AluI	AGCT	6 cut(s)	523, 565, 584, 692, 1497, 1561
Alw21I	GWGCWC	1 cut(s)	1066
Alw26I	GTCTC	3 cut(s)	39, 378, 618
Alw44I	GTGCAC	1 cut(s)	1062
AlwI	GGATC	2 cut(s)	578, 1315
AlwNI	CAGNNNCTG	1 cut(s)	1193
AoxI	GGCC	2 cut(s)	310, 655
ApaLI	GTGCAC	1 cut(s)	1062
ApeKI	GCWGC	7 cut(s)	403, 467, 523, 526, 562, 1164, 1207
ApoI	RAATTY	2 cut(s)	724, 894
Asp700I	GAANNNNTTC	1 cut(s)	1583
Asp718I	GGTACC	1 cut(s)	1274
AspLEI	GCGC	3 cut(s)	531, 1193, 1524
AspS9I	GGNCC	2 cut(s)	934, 1028
AsuC2I	CCSGG	1 cut(s)	1085
AsuHPI	GGTGA	6 cut(s)	52, 144, 398, 710, 1273, 1588
AsuII	TTCGAA	3 cut(s)	305, 329, 1108
AvaII	GGWCC	2 cut(s)	934, 1028
BaeGI	GKGCMC	2 cut(s)	250, 1066
BalI	TGGCCA	1 cut(s)	312
BanI	GGYRCC	3 cut(s)	245, 1274, 1521
BbsI	GAAGAC	1 cut(s)	1250
Bbv12I	GWGCWC	1 cut(s)	1066
BbvCI	CCTCAGC	2 cut(s)	471, 566
BbvI	GCAGC	7 cut(s)	415, 454, 510, 538, 574, 1151, 1194
BccI	CCATC	2 cut(s)	925, 1286
BciT130I	CCWGG	5 cut(s)	23, 235, 696, 1329, 1574
BciVI	GTATCC	2 cut(s)	1090, 1577
BclI	TGATCA	2 cut(s)	577, 1465
BcnI	CCSGG	1 cut(s)	1085
BcoDI	GTCTC	3 cut(s)	39, 378, 618
BfaI	CTAG	2 cut(s)	453, 732
BfmI	CTRYAG	1 cut(s)	524
BfoI	RGCGCY	2 cut(s)	1194, 1525
BfrI	CTTAAG	1 cut(s)	740
BfuI	GTATCC	2 cut(s)	1090, 1577
BisI	GCNGC	8 cut(s)	404, 468, 524, 527, 563, 1165, 1208, 1520
BlsI	GCNGC	8 cut(s)	405, 469, 525, 528, 564, 1166, 1209, 1521
Bme1390I	CCNGG	6 cut(s)	23, 235, 696, 1085, 1329, 1574
Bme18I	GGWCC	2 cut(s)	934, 1028
BmeRI	GACNNNNNGTC	1 cut(s)	742
BmgBI	CACGTC	1 cut(s)	1061
BmgT120I	GGNCC	2 cut(s)	934, 1028
BmiI	GGNNCC	3 cut(s)	247, 1276, 1523
BmrFI	CCNGG	6 cut(s)	23, 235, 696, 1085, 1329, 1574
BmrI	ACTGGG	1 cut(s)	326
BmsI	GCATC	8 cut(s)	115, 239, 490, 802, 1036, 1078, 1176, 1291
BmuI	ACTGGG	1 cut(s)	326
BpiI	GAAGAC	1 cut(s)	1250
BpmI	CTGGAG	3 cut(s)	1071, 1385, 1556
Bpu10I	CCTNAGC	3 cut(s)	471, 566, 585
Bpu14I	TTCGAA	3 cut(s)	305, 329, 1108
BpuMI	CCSGG	1 cut(s)	1085
BsaHI	GRCGYC	1 cut(s)	1522
BsaI	GGTCTC	1 cut(s)	378
BsaJI	CCNNGG	3 cut(s)	221, 263, 1083
BsaWI	WCCGGW	1 cut(s)	37
BsaXI	ACNNNNNCTCC	6 cut(s)	72, 102, 581, 611, 615, 645
Bsc4I	CCNNNNNNNGG	1 cut(s)	967
Bse1I	ACTGG	2 cut(s)	321, 1402
BseBI	CCWGG	5 cut(s)	23, 235, 696, 1329, 1574
BseDI	CCNNGG	3 cut(s)	221, 263, 1083
BseGI	GGATG	6 cut(s)	230, 505, 598, 636, 936, 1093
BseLI	CCNNNNNNNGG	1 cut(s)	967
BseMII	CTCAG	9 cut(s)	185, 273, 368, 462, 471, 557, 599, 1170, 1185
BseNI	ACTGG	2 cut(s)	321, 1402
BseRI	GAGGAG	5 cut(s)	87, 90, 93, 96, 99
BseSI	GKGCMC	2 cut(s)	250, 1066
BseXI	GCAGC	7 cut(s)	415, 454, 510, 538, 574, 1151, 1194
Bsh1236I	CGCG	2 cut(s)	63, 531
BshFI	GGCC	2 cut(s)	312, 657
BshNI	GGYRCC	3 cut(s)	245, 1274, 1521
BsiHKAI	GWGCWC	1 cut(s)	1066
BsiSI	CCGG	3 cut(s)	38, 545, 1085
BslI	CCNNNNNNNGG	1 cut(s)	967
BsmAI	GTCTC	3 cut(s)	39, 378, 618
BsmI	GAATGC	2 cut(s)	469, 1166
BsnI	GGCC	2 cut(s)	312, 657
Bso31I	GGTCTC	1 cut(s)	378
Bsp119I	TTCGAA	3 cut(s)	305, 329, 1108
Bsp1286I	GDGCHC	2 cut(s)	250, 1066
Bsp1407I	TGTACA	1 cut(s)	1502
Bsp143I	GATC	5 cut(s)	142, 570, 577, 1320, 1465
BspACI	CCGC	6 cut(s)	26, 63, 531, 1144, 1325, 1519
BspANI	GGCC	2 cut(s)	312, 657
BspCNI	CTCAG	9 cut(s)	184, 274, 369, 463, 472, 558, 598, 1171, 1186
BspFNI	CGCG	2 cut(s)	63, 531
BspHI	TCATGA	1 cut(s)	178
BspLI	GGNNCC	3 cut(s)	247, 1276, 1523
BspMAI	CTGCAG	1 cut(s)	528
BspPI	GGATC	2 cut(s)	578, 1315
BspQI	GCTCTTC	3 cut(s)	513, 534, 552
BspT104I	TTCGAA	3 cut(s)	305, 329, 1108
BspT107I	GGYRCC	3 cut(s)	245, 1274, 1521
BspTI	CTTAAG	1 cut(s)	740
BspTNI	GGTCTC	1 cut(s)	378
BsrBI	CCGCTC	1 cut(s)	1519
BsrGI	TGTACA	1 cut(s)	1502
BsrI	ACTGG	2 cut(s)	321, 1402
BssECI	CCNNGG	3 cut(s)	221, 263, 1083
BssMI	GATC	5 cut(s)	142, 570, 577, 1320, 1465
BssNI	GRCGYC	1 cut(s)	1522
Bst2UI	CCWGG	5 cut(s)	23, 235, 696, 1329, 1574
Bst4CI	ACNGT	2 cut(s)	787, 1295
Bst6I	CTCTTC	6 cut(s)	49, 64, 513, 534, 552, 1353
BstACI	GRCGYC	1 cut(s)	1522
BstAFI	CTTAAG	1 cut(s)	740
BstAUI	TGTACA	1 cut(s)	1502
BstBI	TTCGAA	3 cut(s)	305, 329, 1108
BstC8I	GCNNGC	4 cut(s)	408, 603, 1189, 1217
BstF5I	GGATG	6 cut(s)	230, 505, 598, 636, 936, 1093
BstFNI	CGCG	2 cut(s)	63, 531
BstH2I	RGCGCY	2 cut(s)	1194, 1525
BstHHI	GCGC	3 cut(s)	531, 1193, 1524
BstKTI	GATC	5 cut(s)	145, 573, 580, 1323, 1468
BstMAI	GTCTC	3 cut(s)	39, 378, 618
BstMBI	GATC	5 cut(s)	142, 570, 577, 1320, 1465
BstMWI	GCNNNNNNNGC	4 cut(s)	1216, 1333, 1485, 1494
BstNI	CCWGG	5 cut(s)	23, 235, 696, 1329, 1574
BstNSI	RCATGY	3 cut(s)	819, 1261, 1265
BstSCI	CCNGG	6 cut(s)	21, 233, 694, 1083, 1327, 1572
BstSFI	CTRYAG	1 cut(s)	524
BstSLI	GKGCMC	2 cut(s)	250, 1066
BstUI	CGCG	2 cut(s)	63, 531
BstV1I	GCAGC	7 cut(s)	415, 454, 510, 538, 574, 1151, 1194
BstV2I	GAAGAC	1 cut(s)	1250
BsuI	GTATCC	2 cut(s)	1090, 1577
BsuRI	GGCC	2 cut(s)	312, 657
BtgZI	GCGATG	1 cut(s)	1368
BtrI	CACGTC	1 cut(s)	1061
BtsCI	GGATG	6 cut(s)	230, 505, 598, 636, 936, 1093
Cac8I	GCNNGC	4 cut(s)	408, 603, 1189, 1217
CaiI	CAGNNNCTG	1 cut(s)	1193
CciI	TCATGA	1 cut(s)	178
CfoI	GCGC	3 cut(s)	531, 1193, 1524
Cfr13I	GGNCC	2 cut(s)	934, 1028
CseI	GACGC	1 cut(s)	69
Csp6I	GTAC	3 cut(s)	89, 1275, 1503
CviQI	GTAC	3 cut(s)	89, 1275, 1503
DinI	GGCGCC	1 cut(s)	1523
DpnI	GATC	5 cut(s)	144, 572, 579, 1322, 1467
DpnII	GATC	5 cut(s)	142, 570, 577, 1320, 1465
DrdI	GACNNNNNNGTC	1 cut(s)	1262
DriI	GACNNNNNGTC	1 cut(s)	742
DseDI	GACNNNNNNGTC	1 cut(s)	1262
EaeI	YGGCCR	1 cut(s)	310
Eam1104I	CTCTTC	6 cut(s)	49, 64, 513, 534, 552, 1353
Eam1105I	GACNNNNNGTC	1 cut(s)	742
EarI	CTCTTC	6 cut(s)	49, 64, 513, 534, 552, 1353
EciI	GGCGGA	1 cut(s)	41
Eco147I	AGGCCT	1 cut(s)	657
Eco31I	GGTCTC	1 cut(s)	378
Eco47I	GGWCC	2 cut(s)	934, 1028
Eco57I	CTGAAG	1 cut(s)	131
EcoRI	GAATTC	1 cut(s)	724
EcoRII	CCWGG	5 cut(s)	21, 233, 694, 1327, 1572
EcoT22I	ATGCAT	3 cut(s)	130, 1241, 1263
EgeI	GGCGCC	1 cut(s)	1523
EheI	GGCGCC	1 cut(s)	1523
FalI	AAGNNNNNCTT	6 cut(s)	1208, 1240, 1475, 1507, 1571, 1603
FauI	CCCGC	1 cut(s)	1332
FbaI	TGATCA	2 cut(s)	577, 1465
Fnu4HI	GCNGC	8 cut(s)	404, 468, 524, 527, 563, 1165, 1208, 1520
FokI	GGATG	6 cut(s)	217, 512, 605, 623, 943, 1100
Fsp4HI	GCNGC	8 cut(s)	404, 468, 524, 527, 563, 1165, 1208, 1520
FspBI	CTAG	2 cut(s)	453, 732
GlaI	GCGC	3 cut(s)	530, 1192, 1523
GluI	GCNGC	8 cut(s)	404, 468, 524, 527, 563, 1165, 1208, 1520
GsuI	CTGGAG	3 cut(s)	1071, 1385, 1556
HaeII	RGCGCY	2 cut(s)	1194, 1525
HaeIII	GGCC	2 cut(s)	312, 657
HapII	CCGG	3 cut(s)	38, 545, 1085
HgaI	GACGC	1 cut(s)	69
HhaI	GCGC	3 cut(s)	531, 1193, 1524
Hin1I	GRCGYC	1 cut(s)	1522
Hin6I	GCGC	3 cut(s)	529, 1191, 1522
HinP1I	GCGC	3 cut(s)	529, 1191, 1522
HincII	GTYRAC	1 cut(s)	813
HindII	GTYRAC	1 cut(s)	813
HinfI	GANTC	9 cut(s)	32, 175, 238, 611, 673, 884, 920, 1128, 1376
HpaII	CCGG	3 cut(s)	38, 545, 1085
HphI	GGTGA	6 cut(s)	52, 144, 398, 710, 1273, 1588
Hpy166II	GTNNAC	4 cut(s)	747, 813, 1064, 1505
Hpy188III	TCNNGA	4 cut(s)	179, 274, 587, 1298
Hpy8I	GTNNAC	4 cut(s)	747, 813, 1064, 1505
Hpy99I	CGWCG	2 cut(s)	11, 125
HpyAV	CCTTC	4 cut(s)	117, 668, 790, 1265
HpyCH4III	ACNGT	2 cut(s)	787, 1295
HpyCH4IV	ACGT	3 cut(s)	630, 1060, 1369
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1216, 1333, 1485, 1494
HpySE526I	ACGT	3 cut(s)	630, 1060, 1369
Hsp92I	GRCGYC	1 cut(s)	1522
HspAI	GCGC	3 cut(s)	529, 1191, 1522
KasI	GGCGCC	1 cut(s)	1521
KpnI	GGTACC	1 cut(s)	1278
Ksp22I	TGATCA	2 cut(s)	577, 1465
Kzo9I	GATC	5 cut(s)	142, 570, 577, 1320, 1465
LguI	GCTCTTC	3 cut(s)	513, 534, 552
LmnI	GCTCC	3 cut(s)	697, 1516, 1566
Lsp1109I	GCAGC	7 cut(s)	415, 454, 510, 538, 574, 1151, 1194
LweI	GCATC	8 cut(s)	115, 239, 490, 802, 1036, 1078, 1176, 1291
MaeI	CTAG	2 cut(s)	453, 732
MaeII	ACGT	3 cut(s)	630, 1060, 1369
MaeIII	GTNAC	5 cut(s)	150, 505, 734, 822, 1112
MalI	GATC	5 cut(s)	144, 572, 579, 1322, 1467
MbiI	CCGCTC	1 cut(s)	1519
MboI	GATC	5 cut(s)	142, 570, 577, 1320, 1465
MhlI	GDGCHC	2 cut(s)	250, 1066
MlsI	TGGCCA	1 cut(s)	312
MluCI	AATT	6 cut(s)	702, 724, 804, 894, 901, 1286
MluNI	TGGCCA	1 cut(s)	312
Mly113I	GGCGCC	1 cut(s)	1522
MlyI	GAGTC	6 cut(s)	41, 169, 620, 914, 1122, 1385
MmeI	TCCRAC	2 cut(s)	861, 1211
Mox20I	TGGCCA	1 cut(s)	312
Mph1103I	ATGCAT	3 cut(s)	130, 1241, 1263
MroXI	GAANNNNTTC	1 cut(s)	1583
MscI	TGGCCA	1 cut(s)	312
MseI	TTAA	5 cut(s)	131, 741, 891, 1008, 1612
MslI	CAYNNNNRTG	1 cut(s)	1530
Msp20I	TGGCCA	1 cut(s)	312
MspA1I	CMGCKG	1 cut(s)	565
MspCI	CTTAAG	1 cut(s)	740
MspI	CCGG	3 cut(s)	38, 545, 1085
MspR9I	CCNGG	6 cut(s)	23, 235, 696, 1085, 1329, 1574
Mva1269I	GAATGC	2 cut(s)	469, 1166
MvaI	CCWGG	5 cut(s)	23, 235, 696, 1329, 1574
MvnI	CGCG	2 cut(s)	63, 531
MwoI	GCNNNNNNNGC	4 cut(s)	1216, 1333, 1485, 1494
NarI	GGCGCC	1 cut(s)	1522
NciI	CCSGG	1 cut(s)	1085
NdeII	GATC	5 cut(s)	142, 570, 577, 1320, 1465
NlaIV	GGNNCC	3 cut(s)	247, 1276, 1523
NmuCI	GTSAC	3 cut(s)	150, 505, 734
NsiI	ATGCAT	3 cut(s)	130, 1241, 1263
NspI	RCATGY	3 cut(s)	819, 1261, 1265
NspV	TTCGAA	3 cut(s)	305, 329, 1108
PagI	TCATGA	1 cut(s)	178
PceI	AGGCCT	1 cut(s)	657
PciI	ACATGT	1 cut(s)	815
PciSI	GCTCTTC	3 cut(s)	513, 534, 552
PcsI	WCGNNNNNNNCGW	2 cut(s)	627, 658
PctI	GAATGC	2 cut(s)	469, 1166
PdmI	GAANNNNTTC	1 cut(s)	1583
PfeI	GAWTC	3 cut(s)	238, 673, 884
PflMI	CCANNNNNTGG	1 cut(s)	967
PfoI	TCCNGGA	1 cut(s)	233
PkrI	GCNGC	8 cut(s)	405, 469, 525, 528, 564, 1166, 1209, 1521
PleI	GAGTC	6 cut(s)	40, 169, 619, 914, 1122, 1384
PluTI	GGCGCC	1 cut(s)	1525
PpsI	GAGTC	6 cut(s)	40, 169, 619, 914, 1122, 1384
PscI	ACATGT	1 cut(s)	815
Psp1406I	AACGTT	2 cut(s)	630, 1369
Psp6I	CCWGG	5 cut(s)	21, 233, 694, 1327, 1572
PspGI	CCWGG	5 cut(s)	21, 233, 694, 1327, 1572
PspN4I	GGNNCC	3 cut(s)	247, 1276, 1523
PspPI	GGNCC	2 cut(s)	934, 1028
PstI	CTGCAG	1 cut(s)	528
PstNI	CAGNNNCTG	1 cut(s)	1193
PvuII	CAGCTG	1 cut(s)	565
RsaI	GTAC	3 cut(s)	90, 1276, 1504
RsaNI	GTAC	3 cut(s)	89, 1275, 1503
RseI	CAYNNNNRTG	1 cut(s)	1530
SapI	GCTCTTC	3 cut(s)	513, 534, 552
SaqAI	TTAA	5 cut(s)	131, 741, 891, 1008, 1612
SatI	GCNGC	8 cut(s)	404, 468, 524, 527, 563, 1165, 1208, 1520
Sau3AI	GATC	5 cut(s)	142, 570, 577, 1320, 1465
Sau96I	GGNCC	2 cut(s)	934, 1028
SchI	GAGTC	6 cut(s)	41, 169, 620, 914, 1122, 1385
ScrFI	CCNGG	6 cut(s)	23, 235, 696, 1085, 1329, 1574
SduI	GDGCHC	2 cut(s)	250, 1066
SfaNI	GCATC	8 cut(s)	115, 239, 490, 802, 1036, 1078, 1176, 1291
SfcI	CTRYAG	1 cut(s)	524
SfoI	GGCGCC	1 cut(s)	1523
SfuI	TTCGAA	3 cut(s)	305, 329, 1108
SinI	GGWCC	2 cut(s)	934, 1028
SmiMI	CAYNNNNRTG	1 cut(s)	1530
SmlI	CTYRAG	1 cut(s)	740
SmoI	CTYRAG	1 cut(s)	740
Sse9I	AATT	6 cut(s)	702, 724, 804, 894, 901, 1286
SseBI	AGGCCT	1 cut(s)	657
SsiI	CCGC	6 cut(s)	26, 63, 531, 1144, 1325, 1519
SspDI	GGCGCC	1 cut(s)	1521
SspMI	CTAG	2 cut(s)	453, 732
StuI	AGGCCT	1 cut(s)	657
StyD4I	CCNGG	6 cut(s)	21, 233, 694, 1083, 1327, 1572
TaaI	ACNGT	2 cut(s)	787, 1295
TaiI	ACGT	3 cut(s)	633, 1063, 1372
TaqI	TCGA	6 cut(s)	120, 241, 305, 329, 661, 1108
TasI	AATT	6 cut(s)	702, 724, 804, 894, 901, 1286
TatI	WGTACW	1 cut(s)	1502
TauI	GCSGC	1 cut(s)	1522
TfiI	GAWTC	3 cut(s)	238, 673, 884
Tru1I	TTAA	5 cut(s)	131, 741, 891, 1008, 1612
Tru9I	TTAA	5 cut(s)	131, 741, 891, 1008, 1612
TseFI	GTSAC	3 cut(s)	150, 505, 734
TseI	GCWGC	7 cut(s)	403, 467, 523, 526, 562, 1164, 1207
Tsp45I	GTSAC	3 cut(s)	150, 505, 734
TspGWI	ACGGA	2 cut(s)	24, 1553
Van91I	CCANNNNNTGG	1 cut(s)	967
Vha464I	CTTAAG	1 cut(s)	740
VneI	GTGCAC	1 cut(s)	1062
VpaK11BI	GGWCC	2 cut(s)	934, 1028
XapI	RAATTY	2 cut(s)	724, 894
XceI	RCATGY	3 cut(s)	819, 1261, 1265
XmnI	GAANNNNTTC	1 cut(s)	1583
XspI	CTAG	2 cut(s)	453, 732
Zsp2I	ATGCAT	3 cut(s)	130, 1241, 1263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.