RLG00000003044

E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0008811
Physical Location & Seq
Reverse (-)
43572440 .. 43578010
5571 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003044

Sequence Viewer

Length: 2067 bp
ATGAACCGCGGAGGTAATAACCAAGCGGACGAATCTCCGGTGAGAAAGACCAGAAGAGGACGCGGAGGAGGAGGACGGGAACAACACCACCCTTCTCTCCAAATCGACGATACATTAAAACTCAAGACTCTTCAGTCACCTTTGACTTGTCAGCCTCAGACTCATGAACCCACCACCTCGACACCCAGAAACCACAGAAATCCGAGGTCGGCATCCAGGAATCGAGGTGCCCATGTATTCAAACCTCGGTTTGTCAAGAAATCTGAGTTGGGTTCTTCTTCGAATGGCGAACTGGGTTCTTCTTCGAAGAATGAACAAGTGGGTTCTTTGAATGATGAGGTGGGGTCTCTGAGTATTGGTGAGGGAGAAAGTGGGCAGCAAGCGAAACAAGAAGAAGAGAGAGTTGGGGTTAGTGTAGAGAATGCTGCTGAGGTGTCTGAGTGTGGGAAAGGGGAGGAGGATGATGCTGTGACAAGATTGGAAGAGCTGCAGCGCGGTGTCGAAGAGCCGGAGTTGTCAGAAGACCAGCTGAGGCTCAATGATCAGGCTCAGGAGGATGAGTTGCTTGCTATGGAGTCCATTTTCGGAGACAACGTTTTCATCCTTGAAAGACAACGAGGCCTTCGATGTTTTCAGATTCATATACACATTGAAGCTCCTGGTGAAATTGCTGTTTCTACTAAGTTGAATTCATCTAGTGACCTTAAGTCCACAAGTAGTAGTTCTGATGACTTCTCATACTCCTTCACAGTCCAGCATCTGCCACCAATTATGTTGACATGTGCGTTACCCAAATCATACCCAAGCCACCAACCACCTTATTTCACACTATCTGTTCAATGGTTGGATTCTATTAAAATTTCCAATTTGTGTTCCATGCTGGACTCATTATGGATGGACCAACAAGGACAGGAGGTTATATACCAATGGGTGGAATGGCTACAAAGTTCTTCTCTTTCTCATCTTGGGTTTAATAAGGAAATAATGCTTGGTCCTTATGGTATTAGAGATGCTGGAGATAGACGTGCGCTCACAGGAAGTGTATCCCCGGATGCCGATATTCCTTTTCTTCGAGGTTACAATAATGATAGACTCCATGAGAACTTCCGCAATAGTTTGCAGGAATGCTGCATCTGTTTTACTGAGCATGCAGGCGCTGAGTTTGTCAGGCTGCCTTGCAAGCATTTCTTCTGTTGGAAATGCATGAAGACTTATTCTGACATGCATGTCAAGGAAGGTACCATCACCAAATTGAACTGTCCTGATGCAAAATGTCAGGGTATGATCCCGCCAGGTTTGCTAAAACAATTGCTTGGCGATGAAGAGTTTGAACGTTGGGAGTCCTTGATGTTAGAAAAAACACTTGAGTCAATGTCTGATATTGTGCCTTGTCCAAGATGTAAAACACCCTGCATAGAAGATGAAGATGATCATGCCCAATGCTCAAAGTGCTTCTTTAGCTTCTGTACACTTTGCTGGGAGCGGCGCCATGTGGGTGTTCAATGTATGACACCAGAAATGAAGCTCCGTATCCTCCAGGAACGTCAAAACTTCAGTCAGTTAGGCGATGAGCAAAAGCAGAGAGAAAGAGAAATGATCAATGAGATCCTCAGTGTGAGAGAAATACTTAGCGATGCAAAGCAATGCCCGGCTTGCAACATGGCAATATCCCGAGTTGAAGGTTGCAACAAGATGGTGTGTGAAAATTGTGGGCAGTACTTCTGCTACAACTGTGGAAGCGGAATAACTGGATATGAGCATTTCAGGGATGGGAAATGTGAACTGTTCCCCCAAGAAACAATTCAGAACTGGCAGGCACAGATGAATCCTCGCCAGAATTTGGGTCAGATACACGCTGAACAGGTTGCTGAACTGGTTGCCCAGCAGGTAGCTGTACACGGACAGTTATGTCCCAGTTGTGGTCAGTTTAATGCAAAGTTTAACAATAACAATCATATATCCTGCTGGGCATGCCAACACCACTTTTGCTACTTATGCAAAGAGACCGTGAGGCGAAGCTCTCAGCATTATGGACCGAAGGGTTGCAAACAACACACAGCAGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006464 GO:0006807 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0023051 GO:0023052 GO:0030162 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0033143 GO:0035257 GO:0035258 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051427 GO:0051716 GO:0060255 GO:0060765 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1990234 GO:2000058 GO:2000060 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IBR RWD zf-C3HC4

Protein Analysis

689

Amino Acids

77.69

Weight (kDa)

5.73

Isoelectric Point (pI)

54.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RWD PF05773 182 - 316 1.6e-23 RWD domain
IBR PF01485 444 - 502 1e-08 IBR domain, a half RING-finger domain
IBR PF01485 543 - 580 2.2e-06 IBR domain, a half RING-finger domain
IBR_1 PF22191 546 - 579 1.7e-06 IBR domain
Rcat_RNF216 PF26200 547 - 590 1.6e-08 RNF216 Rcat domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 133, 1226, 1908
Acc36I ACCTGC 1 cut(s) 1876
Acc65I GGTACC 1 cut(s) 1238
AccB1I GGYRCC 3 cut(s) 227, 1238, 1485
AccB7I CCANNNNNTGG 2 cut(s) 931, 1840
AccBSI CCGCTC 1 cut(s) 1483
AccII CGCG 3 cut(s) 9, 63, 495
AciI CCGC 9 cut(s) 7, 9, 26, 63, 495, 1108, 1289, 1483, 1740
AclI AACGTT 2 cut(s) 594, 1333
AclWI GGATC 2 cut(s) 1279, 1600
AcsI RAATTY 3 cut(s) 688, 858, 1837
AcuI CTGAAG 2 cut(s) 116, 1537
AcyI GRCGYC 1 cut(s) 1486
AfaI GTAC 4 cut(s) 1240, 1468, 1718, 1896
AfiI CCNNNNNNNGG 3 cut(s) 931, 1840, 1919
AflII CTTAAG 1 cut(s) 704
AflIII ACRYGT 1 cut(s) 779
AhdI GACNNNNNGTC 1 cut(s) 706
AjiI CACGTC 1 cut(s) 1025
AjnI CCWGG 4 cut(s) 215, 658, 1291, 1536
AjuI GAANNNNNNNTTGG 8 cut(s) 251, 283, 387, 419, 972, 1004, 1785, 1817
AluBI AGCT 7 cut(s) 487, 529, 656, 1461, 1525, 1892, 2019
AluI AGCT 7 cut(s) 487, 529, 656, 1461, 1525, 1892, 2019
Alw26I GTCTC 3 cut(s) 351, 582, 1997
AlwI GGATC 2 cut(s) 1279, 1600
AlwNI CAGNNNCTG 2 cut(s) 760, 1157
Ama87I CYCGRG 1 cut(s) 1671
AoxI GGCC 1 cut(s) 619
ApeKI GCWGC 6 cut(s) 376, 425, 487, 490, 1128, 1171
ApoI RAATTY 3 cut(s) 688, 858, 1837
ArsI GACNNNNNNTTYG 2 cut(s) 1540, 1572
Asp700I GAANNNNTTC 1 cut(s) 1800
Asp718I GGTACC 1 cut(s) 1238
AspLEI GCGC 4 cut(s) 495, 1030, 1157, 1488
AspS9I GGNCC 3 cut(s) 898, 992, 2033
AsuC2I CCSGG 2 cut(s) 1049, 1649
AsuHPI GGTGA 5 cut(s) 52, 129, 371, 674, 1237
AsuII TTCGAA 2 cut(s) 281, 305
AvaI CYCGRG 1 cut(s) 1671
AvaII GGWCC 3 cut(s) 898, 992, 2033
BaeGI GKGCMC 1 cut(s) 232
BanI GGYRCC 3 cut(s) 227, 1238, 1485
BbsI GAAGAC 2 cut(s) 528, 1214
BbvCI CCTCAGC 2 cut(s) 429, 530
BbvI GCAGC 6 cut(s) 388, 412, 474, 502, 1115, 1158
BccI CCATC 4 cut(s) 889, 1250, 1687, 1763
BciT130I CCWGG 4 cut(s) 217, 660, 1293, 1538
BciVI GTATCC 2 cut(s) 1054, 1541
BclI TGATCA 3 cut(s) 541, 1429, 1596
BcnI CCSGG 2 cut(s) 1049, 1649
BcoDI GTCTC 3 cut(s) 351, 582, 1997
BfaI CTAG 1 cut(s) 696
BfmI CTRYAG 1 cut(s) 488
BfoI RGCGCY 2 cut(s) 1158, 1489
BfrI CTTAAG 1 cut(s) 704
BfuAI ACCTGC 1 cut(s) 1876
BfuI GTATCC 2 cut(s) 1054, 1541
BisI GCNGC 7 cut(s) 377, 426, 488, 491, 1129, 1172, 1484
BlsI GCNGC 7 cut(s) 378, 427, 489, 492, 1130, 1173, 1485
BmcAI AGTACT 1 cut(s) 1718
Bme1390I CCNGG 6 cut(s) 217, 660, 1049, 1293, 1538, 1649
Bme18I GGWCC 3 cut(s) 898, 992, 2033
BmeRI GACNNNNNGTC 1 cut(s) 706
BmeT110I CYCGRG 1 cut(s) 1671
BmgBI CACGTC 1 cut(s) 1025
BmgT120I GGNCC 3 cut(s) 898, 992, 2033
BmiI GGNNCC 3 cut(s) 229, 1240, 1487
BmrFI CCNGG 6 cut(s) 217, 660, 1049, 1293, 1538, 1649
BmrI ACTGGG 2 cut(s) 302, 1908
BmsI GCATC 8 cut(s) 221, 454, 766, 1000, 1042, 1140, 1255, 1624
BmuI ACTGGG 2 cut(s) 302, 1908
BpiI GAAGAC 2 cut(s) 528, 1214
BpmI CTGGAG 2 cut(s) 1035, 1520
Bpu10I CCTNAGC 3 cut(s) 429, 530, 549
Bpu14I TTCGAA 2 cut(s) 281, 305
BpuEI CTTGAG 2 cut(s) 107, 1385
BpuMI CCSGG 2 cut(s) 1049, 1649
BsaHI GRCGYC 1 cut(s) 1486
BsaI GGTCTC 2 cut(s) 351, 1997
BsaJI CCNNGG 4 cut(s) 7, 203, 245, 1047
BsaWI WCCGGW 1 cut(s) 37
BsaXI ACNNNNNCTCC 4 cut(s) 545, 575, 579, 609
Bsc4I CCNNNNNNNGG 3 cut(s) 931, 1840, 1919
Bse1I ACTGG 5 cut(s) 297, 1753, 1814, 1878, 1914
Bse3DI GCAATG 1 cut(s) 1649
BseBI CCWGG 4 cut(s) 217, 660, 1293, 1538
BseDI CCNNGG 4 cut(s) 7, 203, 245, 1047
BseGI GGATG 7 cut(s) 212, 466, 562, 600, 900, 1057, 1774
BseLI CCNNNNNNNGG 3 cut(s) 931, 1840, 1919
BseMI GCAATG 1 cut(s) 1649
BseNI ACTGG 5 cut(s) 297, 1753, 1814, 1878, 1914
BseRI GAGGAG 3 cut(s) 81, 84, 470
BseSI GKGCMC 1 cut(s) 232
BseXI GCAGC 6 cut(s) 388, 412, 474, 502, 1115, 1158
BseYI CCCAGC 3 cut(s) 1476, 1881, 1965
Bsh1236I CGCG 3 cut(s) 9, 63, 495
BshFI GGCC 1 cut(s) 621
BshNI GGYRCC 3 cut(s) 227, 1238, 1485
BsiHKCI CYCGRG 1 cut(s) 1671
BsiSI CCGG 4 cut(s) 38, 509, 1049, 1649
BslFI GGGAC 1 cut(s) 1896
BslI CCNNNNNNNGG 3 cut(s) 931, 1840, 1919
BsmAI GTCTC 3 cut(s) 351, 582, 1997
BsmFI GGGAC 1 cut(s) 1896
BsmI GAATGC 2 cut(s) 427, 1130
BsnI GGCC 1 cut(s) 621
Bso31I GGTCTC 2 cut(s) 351, 1997
BsoBI CYCGRG 1 cut(s) 1671
Bsp119I TTCGAA 2 cut(s) 281, 305
Bsp1286I GDGCHC 1 cut(s) 232
Bsp1407I TGTACA 2 cut(s) 1466, 1894
Bsp143I GATC 5 cut(s) 541, 1284, 1429, 1596, 1605
BspACI CCGC 9 cut(s) 7, 9, 26, 63, 495, 1108, 1289, 1483, 1740
BspANI GGCC 1 cut(s) 621
BspFNI CGCG 3 cut(s) 9, 63, 495
BspHI TCATGA 1 cut(s) 163
BspLI GGNNCC 3 cut(s) 229, 1240, 1487
BspMAI CTGCAG 1 cut(s) 492
BspMI ACCTGC 1 cut(s) 1876
BspPI GGATC 2 cut(s) 1279, 1600
BspQI GCTCTTC 2 cut(s) 477, 498
BspT104I TTCGAA 2 cut(s) 281, 305
BspT107I GGYRCC 3 cut(s) 227, 1238, 1485
BspTI CTTAAG 1 cut(s) 704
BspTNI GGTCTC 2 cut(s) 351, 1997
BsrBI CCGCTC 1 cut(s) 1483
BsrDI GCAATG 1 cut(s) 1649
BsrGI TGTACA 2 cut(s) 1466, 1894
BsrI ACTGG 5 cut(s) 297, 1753, 1814, 1878, 1914
BssECI CCNNGG 4 cut(s) 7, 203, 245, 1047
BssMI GATC 5 cut(s) 541, 1284, 1429, 1596, 1605
BssNI GRCGYC 1 cut(s) 1486
Bst2UI CCWGG 4 cut(s) 217, 660, 1293, 1538
Bst4CI ACNGT 6 cut(s) 751, 1259, 1733, 1785, 1905, 2008
Bst6I CTCTTC 6 cut(s) 49, 135, 390, 477, 498, 1317
BstACI GRCGYC 1 cut(s) 1486
BstAFI CTTAAG 1 cut(s) 704
BstAUI TGTACA 2 cut(s) 1466, 1894
BstBI TTCGAA 2 cut(s) 281, 305
BstC8I GCNNGC 8 cut(s) 381, 567, 1149, 1153, 1181, 1654, 1815, 1972
BstDSI CCRYGG 1 cut(s) 7
BstF5I GGATG 7 cut(s) 212, 466, 562, 600, 900, 1057, 1774
BstFNI CGCG 3 cut(s) 9, 63, 495
BstH2I RGCGCY 2 cut(s) 1158, 1489
BstHHI GCGC 4 cut(s) 495, 1030, 1157, 1488
BstKTI GATC 5 cut(s) 544, 1287, 1432, 1599, 1608
BstMAI GTCTC 3 cut(s) 351, 582, 1997
BstMBI GATC 5 cut(s) 541, 1284, 1429, 1596, 1605
BstMWI GCNNNNNNNGC 7 cut(s) 1180, 1297, 1449, 1458, 1653, 1971, 1995
BstNI CCWGG 4 cut(s) 217, 660, 1293, 1538
BstNSI RCATGY 5 cut(s) 783, 1151, 1225, 1229, 1974
BstSCI CCNGG 6 cut(s) 215, 658, 1047, 1291, 1536, 1647
BstSFI CTRYAG 1 cut(s) 488
BstSLI GKGCMC 1 cut(s) 232
BstUI CGCG 3 cut(s) 9, 63, 495
BstV1I GCAGC 6 cut(s) 388, 412, 474, 502, 1115, 1158
BstV2I GAAGAC 2 cut(s) 528, 1214
BstX2I RGATCY 1 cut(s) 1605
BstYI RGATCY 1 cut(s) 1605
BsuI GTATCC 2 cut(s) 1054, 1541
BsuRI GGCC 1 cut(s) 621
BtgI CCRYGG 1 cut(s) 7
BtgZI GCGATG 3 cut(s) 1332, 1581, 1647
BtrI CACGTC 1 cut(s) 1025
BtsCI GGATG 7 cut(s) 212, 466, 562, 600, 900, 1057, 1774
BtsIMutI CAGTG 1 cut(s) 1618
BveI ACCTGC 1 cut(s) 1876
Cac8I GCNNGC 8 cut(s) 381, 567, 1149, 1153, 1181, 1654, 1815, 1972
CaiI CAGNNNCTG 2 cut(s) 760, 1157
CciI TCATGA 1 cut(s) 163
CfoI GCGC 4 cut(s) 495, 1030, 1157, 1488
Cfr13I GGNCC 3 cut(s) 898, 992, 2033
Cfr42I CCGCGG 1 cut(s) 10
CseI GACGC 1 cut(s) 69
Csp6I GTAC 4 cut(s) 1239, 1467, 1717, 1895
CviQI GTAC 4 cut(s) 1239, 1467, 1717, 1895
DinI GGCGCC 1 cut(s) 1487
DpnI GATC 5 cut(s) 543, 1286, 1431, 1598, 1607
DpnII GATC 5 cut(s) 541, 1284, 1429, 1596, 1605
DrdI GACNNNNNNGTC 3 cut(s) 133, 1226, 1908
DriI GACNNNNNGTC 1 cut(s) 706
DseDI GACNNNNNNGTC 3 cut(s) 133, 1226, 1908
Eam1104I CTCTTC 6 cut(s) 49, 135, 390, 477, 498, 1317
Eam1105I GACNNNNNGTC 1 cut(s) 706
EarI CTCTTC 6 cut(s) 49, 135, 390, 477, 498, 1317
Eco147I AGGCCT 1 cut(s) 621
Eco31I GGTCTC 2 cut(s) 351, 1997
Eco47I GGWCC 3 cut(s) 898, 992, 2033
Eco57I CTGAAG 2 cut(s) 116, 1537
Eco88I CYCGRG 1 cut(s) 1671
EcoRI GAATTC 1 cut(s) 688
EcoRII CCWGG 4 cut(s) 215, 658, 1291, 1536
EcoT22I ATGCAT 2 cut(s) 1205, 1227
EgeI GGCGCC 1 cut(s) 1487
EheI GGCGCC 1 cut(s) 1487
FalI AAGNNNNNCTT 4 cut(s) 1172, 1204, 1439, 1471
FaqI GGGAC 1 cut(s) 1896
FauI CCCGC 1 cut(s) 1296
FbaI TGATCA 3 cut(s) 541, 1429, 1596
Fnu4HI GCNGC 7 cut(s) 377, 426, 488, 491, 1129, 1172, 1484
FokI GGATG 7 cut(s) 199, 473, 569, 587, 907, 1064, 1781
Fsp4HI GCNGC 7 cut(s) 377, 426, 488, 491, 1129, 1172, 1484
FspBI CTAG 1 cut(s) 696
GlaI GCGC 4 cut(s) 494, 1029, 1156, 1487
GluI GCNGC 7 cut(s) 377, 426, 488, 491, 1129, 1172, 1484
GsaI CCCAGC 3 cut(s) 1480, 1885, 1969
GsuI CTGGAG 2 cut(s) 1035, 1520
HaeII RGCGCY 2 cut(s) 1158, 1489
HaeIII GGCC 1 cut(s) 621
HapII CCGG 4 cut(s) 38, 509, 1049, 1649
HgaI GACGC 1 cut(s) 69
HhaI GCGC 4 cut(s) 495, 1030, 1157, 1488
Hin1I GRCGYC 1 cut(s) 1486
Hin6I GCGC 4 cut(s) 493, 1028, 1155, 1486
HinP1I GCGC 4 cut(s) 493, 1028, 1155, 1486
HincII GTYRAC 1 cut(s) 777
HindII GTYRAC 1 cut(s) 777
HpaII CCGG 4 cut(s) 38, 509, 1049, 1649
HphI GGTGA 5 cut(s) 52, 129, 371, 674, 1237
Hpy166II GTNNAC 5 cut(s) 711, 777, 1469, 1781, 1897
Hpy188III TCNNGA 6 cut(s) 124, 164, 256, 551, 1262, 1671
Hpy8I GTNNAC 5 cut(s) 711, 777, 1469, 1781, 1897
Hpy99I CGWCG 1 cut(s) 110
HpyAV CCTTC 6 cut(s) 102, 632, 754, 1229, 1673, 2032
HpyCH4III ACNGT 6 cut(s) 751, 1259, 1733, 1785, 1905, 2008
HpyCH4IV ACGT 4 cut(s) 594, 1024, 1333, 1543
HpyF10VI GCNNNNNNNGC 7 cut(s) 1180, 1297, 1449, 1458, 1653, 1971, 1995
HpySE526I ACGT 4 cut(s) 594, 1024, 1333, 1543
Hsp92I GRCGYC 1 cut(s) 1486
HspAI GCGC 4 cut(s) 493, 1028, 1155, 1486
KasI GGCGCC 1 cut(s) 1485
KpnI GGTACC 1 cut(s) 1242
Ksp22I TGATCA 3 cut(s) 541, 1429, 1596
KspI CCGCGG 1 cut(s) 10
Kzo9I GATC 5 cut(s) 541, 1284, 1429, 1596, 1605
LguI GCTCTTC 2 cut(s) 477, 498
LmnI GCTCC 3 cut(s) 661, 1480, 1530
Lsp1109I GCAGC 6 cut(s) 388, 412, 474, 502, 1115, 1158
LweI GCATC 8 cut(s) 221, 454, 766, 1000, 1042, 1140, 1255, 1624
MaeI CTAG 1 cut(s) 696
MaeII ACGT 4 cut(s) 594, 1024, 1333, 1543
MaeIII GTNAC 5 cut(s) 135, 469, 698, 786, 1076
MalI GATC 5 cut(s) 543, 1286, 1431, 1598, 1607
MbiI CCGCTC 1 cut(s) 1483
MboI GATC 5 cut(s) 541, 1284, 1429, 1596, 1605
MfeI CAATTG 1 cut(s) 1307
MflI RGATCY 1 cut(s) 1605
MhlI GDGCHC 1 cut(s) 232
Mly113I GGCGCC 1 cut(s) 1486
MlyI GAGTC 7 cut(s) 121, 154, 584, 878, 1086, 1349, 1376
MmeI TCCRAC 2 cut(s) 825, 1175
Mph1103I ATGCAT 2 cut(s) 1205, 1227
MroXI GAANNNNTTC 1 cut(s) 1800
MseI TTAA 6 cut(s) 116, 705, 855, 972, 1929, 1941
MslI CAYNNNNRTG 1 cut(s) 1494
MspA1I CMGCKG 2 cut(s) 9, 529
MspCI CTTAAG 1 cut(s) 704
MspI CCGG 4 cut(s) 38, 509, 1049, 1649
MspR9I CCNGG 6 cut(s) 217, 660, 1049, 1293, 1538, 1649
MunI CAATTG 1 cut(s) 1307
Mva1269I GAATGC 2 cut(s) 427, 1130
MvaI CCWGG 4 cut(s) 217, 660, 1293, 1538
MvnI CGCG 3 cut(s) 9, 63, 495
MwoI GCNNNNNNNGC 7 cut(s) 1180, 1297, 1449, 1458, 1653, 1971, 1995
NarI GGCGCC 1 cut(s) 1486
NciI CCSGG 2 cut(s) 1049, 1649
NdeII GATC 5 cut(s) 541, 1284, 1429, 1596, 1605
NlaIV GGNNCC 3 cut(s) 229, 1240, 1487
NmuCI GTSAC 3 cut(s) 135, 469, 698
NsiI ATGCAT 2 cut(s) 1205, 1227
NspI RCATGY 5 cut(s) 783, 1151, 1225, 1229, 1974
NspV TTCGAA 2 cut(s) 281, 305
PaeI GCATGC 2 cut(s) 1151, 1974
PagI TCATGA 1 cut(s) 163
PceI AGGCCT 1 cut(s) 621
PciI ACATGT 1 cut(s) 779
PciSI GCTCTTC 2 cut(s) 477, 498
PcsI WCGNNNNNNNCGW 2 cut(s) 591, 622
PctI GAATGC 2 cut(s) 427, 1130
PdmI GAANNNNTTC 1 cut(s) 1800
PfeI GAWTC 5 cut(s) 32, 220, 637, 848, 1825
PflMI CCANNNNNTGG 2 cut(s) 931, 1840
PfoI TCCNGGA 2 cut(s) 215, 1536
PkrI GCNGC 7 cut(s) 378, 427, 489, 492, 1130, 1173, 1485
PleI GAGTC 7 cut(s) 121, 154, 583, 878, 1086, 1348, 1375
PluTI GGCGCC 1 cut(s) 1489
PpsI GAGTC 7 cut(s) 121, 154, 583, 878, 1086, 1348, 1375
PscI ACATGT 1 cut(s) 779
Psp1406I AACGTT 2 cut(s) 594, 1333
Psp6I CCWGG 4 cut(s) 215, 658, 1291, 1536
PspFI CCCAGC 3 cut(s) 1476, 1881, 1965
PspGI CCWGG 4 cut(s) 215, 658, 1291, 1536
PspN4I GGNNCC 3 cut(s) 229, 1240, 1487
PspPI GGNCC 3 cut(s) 898, 992, 2033
PstI CTGCAG 1 cut(s) 492
PstNI CAGNNNCTG 2 cut(s) 760, 1157
PsuI RGATCY 1 cut(s) 1605
PvuII CAGCTG 1 cut(s) 529
RsaI GTAC 4 cut(s) 1240, 1468, 1718, 1896
RsaNI GTAC 4 cut(s) 1239, 1467, 1717, 1895
RseI CAYNNNNRTG 1 cut(s) 1494
SacII CCGCGG 1 cut(s) 10
SapI GCTCTTC 2 cut(s) 477, 498
SaqAI TTAA 6 cut(s) 116, 705, 855, 972, 1929, 1941
SatI GCNGC 7 cut(s) 377, 426, 488, 491, 1129, 1172, 1484
Sau3AI GATC 5 cut(s) 541, 1284, 1429, 1596, 1605
Sau96I GGNCC 3 cut(s) 898, 992, 2033
ScaI AGTACT 1 cut(s) 1718
SchI GAGTC 7 cut(s) 121, 154, 584, 878, 1086, 1349, 1376
ScrFI CCNGG 6 cut(s) 217, 660, 1049, 1293, 1538, 1649
SduI GDGCHC 1 cut(s) 232
SfaNI GCATC 8 cut(s) 221, 454, 766, 1000, 1042, 1140, 1255, 1624
SfcI CTRYAG 1 cut(s) 488
SfoI GGCGCC 1 cut(s) 1487
Sfr303I CCGCGG 1 cut(s) 10
SfuI TTCGAA 2 cut(s) 281, 305
SgrBI CCGCGG 1 cut(s) 10
SinI GGWCC 3 cut(s) 898, 992, 2033
SmiMI CAYNNNNRTG 1 cut(s) 1494
SmlI CTYRAG 3 cut(s) 122, 704, 1364
SmoI CTYRAG 3 cut(s) 122, 704, 1364
SphI GCATGC 2 cut(s) 1151, 1974
SseBI AGGCCT 1 cut(s) 621
SsiI CCGC 9 cut(s) 7, 9, 26, 63, 495, 1108, 1289, 1483, 1740
SspDI GGCGCC 1 cut(s) 1485
SspMI CTAG 1 cut(s) 696
StuI AGGCCT 1 cut(s) 621
StyD4I CCNGG 6 cut(s) 215, 658, 1047, 1291, 1536, 1647
TaaI ACNGT 6 cut(s) 751, 1259, 1733, 1785, 1905, 2008
TaiI ACGT 4 cut(s) 597, 1027, 1336, 1546
TaqI TCGA 8 cut(s) 105, 179, 223, 281, 305, 501, 625, 1072
TaqII GACCGA 1 cut(s) 2050
TatI WGTACW 3 cut(s) 1466, 1716, 1894
TauI GCSGC 1 cut(s) 1486
TfiI GAWTC 5 cut(s) 32, 220, 637, 848, 1825
Tru1I TTAA 6 cut(s) 116, 705, 855, 972, 1929, 1941
Tru9I TTAA 6 cut(s) 116, 705, 855, 972, 1929, 1941
TscAI CASTG 1 cut(s) 1618
TseFI GTSAC 3 cut(s) 135, 469, 698
TseI GCWGC 6 cut(s) 376, 425, 487, 490, 1128, 1171
Tsp45I GTSAC 3 cut(s) 135, 469, 698
TspGWI ACGGA 2 cut(s) 1517, 1914
TspRI CASTG 1 cut(s) 1618
Van91I CCANNNNNTGG 2 cut(s) 931, 1840
Vha464I CTTAAG 1 cut(s) 704
VpaK11BI GGWCC 3 cut(s) 898, 992, 2033
XapI RAATTY 3 cut(s) 688, 858, 1837
XceI RCATGY 5 cut(s) 783, 1151, 1225, 1229, 1974
XmnI GAANNNNTTC 1 cut(s) 1800
XspI CTAG 1 cut(s) 696
ZrmI AGTACT 1 cut(s) 1718
Zsp2I ATGCAT 2 cut(s) 1205, 1227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.