Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0008811

Physical Location & Seq

Genomic Coordinates Reverse (-)

39811932 .. 39815570

Gene Structure 3639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00030310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGAGGTGGGGTCTCGGAGTATTATTGGTGAGGGAGGAAGTAGGCGAGCGCGAAACAAGAAGAAGAGAGAGTTGGGGTTGGTGTAGCGAATGTTGCTCGGTGTCCGAGCATGGGAAAGAGGAGGATGATCTTGTGACAAGATTGGAAGAGCTGCATCGCGGTGTCGAAGAGCCGGAGTTGTCGAAGAGCAGGCGAGGATCAATGATTTCCAGGTTAGGCGATTGTGAGCTTCGGTTGTGCCTTTCGATGCTCCTATCACTTGGAATCCTGCGGTACGAAAGAAGCGAAGAGCCAAACCATTCGAATAGCGGTGACATTCAAGAAGGGGAACTTGTGTTGAGTGGGAACGGGCATCTCGAGCTATTCTATTCGGTTGTCCGGAGGTTGCAGAATATATCAGGTATAAAATTAAGGTTAAGTAATGTGAGGAGGATGTTTTATACCATTTATGAATCAATTTGGAATAAGAAGGTGATGTTGTCTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

18.84

Weight (kDa)

6.45

Isoelectric Point (pI)

66.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32340
fragaria_vesca	FvH4_5g22580
malus_domestica	MD06G1037600.v1.1
prunus_persica	Prupe.5G031400_v2.0.a1
pyrus_communis	pycom06g03120 pycom06g03130
rosa_chinensis	RchiOBHm_Chr7g0210351
rosa_laevigata	RLG00000003044
rosa_multiflora	Rmu_sc0003807.1_g000003
rosa_roxburghii	Rroxscaffold_1G00030310 Rroxscaffold_1G00030320 Rroxscaffold_1G00030790 Rroxscaffold_1G00030800 Rroxscaffold_1G00038480 Rroxscaffold_3G00248360 Rroxscaffold_5G00369280
rosa_rugosa	Rorug07G0121300
rosa_samantha	Rh2BG360900 Rh7AG254000 Rh7BG248900 Rh7CG270800 Rh7DG261500
rosa_wichuraiana	Rw7G021650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	51, 159
AccIII	TCCGGA	1 cut(s)	378
AciI	CCGC	3 cut(s)	159, 271, 309
AclWI	GGATC	1 cut(s)	205
AfaI	GTAC	1 cut(s)	275
AfiI	CCNNNNNNNGG	1 cut(s)	111
AgsI	TTSAA	1 cut(s)	320
AjnI	CCWGG	1 cut(s)	209
AjuI	GAANNNNNNNTTGG	2 cut(s)	55, 87
AluBI	AGCT	3 cut(s)	151, 229, 361
AluI	AGCT	3 cut(s)	151, 229, 361
Alw26I	GTCTC	1 cut(s)	17
AlwI	GGATC	1 cut(s)	205
Ama87I	CYCGRG	1 cut(s)	356
Aor13HI	TCCGGA	1 cut(s)	378
ApeKI	GCWGC	1 cut(s)	151
AspLEI	GCGC	1 cut(s)	51
AsuHPI	GGTGA	3 cut(s)	40, 323, 484
AsuII	TTCGAA	1 cut(s)	302
AvaI	CYCGRG	1 cut(s)	356
BbvI	GCAGC	1 cut(s)	138
BciT130I	CCWGG	1 cut(s)	211
BcoDI	GTCTC	1 cut(s)	17
BisI	GCNGC	1 cut(s)	152
BlsI	GCNGC	1 cut(s)	153
Bme1390I	CCNGG	1 cut(s)	211
BmeT110I	CYCGRG	1 cut(s)	356
BmrFI	CCNGG	1 cut(s)	211
BmsI	GCATC	3 cut(s)	163, 237, 361
Bpu14I	TTCGAA	1 cut(s)	302
BsaI	GGTCTC	1 cut(s)	17
BsaWI	WCCGGW	1 cut(s)	378
Bsc4I	CCNNNNNNNGG	1 cut(s)	111
BseAI	TCCGGA	1 cut(s)	378
BseBI	CCWGG	1 cut(s)	211
BseGI	GGATG	2 cut(s)	130, 438
BseLI	CCNNNNNNNGG	1 cut(s)	111
BseRI	GAGGAG	2 cut(s)	134, 442
BseXI	GCAGC	1 cut(s)	138
Bsh1236I	CGCG	2 cut(s)	51, 159
BsiHKCI	CYCGRG	1 cut(s)	356
BsiSI	CCGG	2 cut(s)	173, 379
BslI	CCNNNNNNNGG	1 cut(s)	111
BsmAI	GTCTC	1 cut(s)	17
Bso31I	GGTCTC	1 cut(s)	17
BsoBI	CYCGRG	1 cut(s)	356
Bsp119I	TTCGAA	1 cut(s)	302
Bsp13I	TCCGGA	1 cut(s)	378
Bsp143I	GATC	2 cut(s)	127, 197
BspACI	CCGC	3 cut(s)	159, 271, 309
BspEI	TCCGGA	1 cut(s)	378
BspFNI	CGCG	2 cut(s)	51, 159
BspPI	GGATC	1 cut(s)	205
BspQI	GCTCTTC	4 cut(s)	141, 162, 179, 282
BspT104I	TTCGAA	1 cut(s)	302
BspTNI	GGTCTC	1 cut(s)	17
BssMI	GATC	2 cut(s)	127, 197
Bst2UI	CCWGG	1 cut(s)	211
Bst6I	CTCTTC	5 cut(s)	58, 141, 162, 179, 282
BstBI	TTCGAA	1 cut(s)	302
BstC8I	GCNNGC	2 cut(s)	47, 191
BstDEI	CTNAG	1 cut(s)	483
BstF5I	GGATG	2 cut(s)	130, 438
BstFNI	CGCG	2 cut(s)	51, 159
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	2 cut(s)	130, 200
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	2 cut(s)	127, 197
BstMWI	GCNNNNNNNGC	2 cut(s)	93, 358
BstNI	CCWGG	1 cut(s)	211
BstSCI	CCNGG	1 cut(s)	209
BstUI	CGCG	2 cut(s)	51, 159
BstV1I	GCAGC	1 cut(s)	138
BtgZI	GCGATG	1 cut(s)	140
BtsCI	GGATG	2 cut(s)	130, 438
Cac8I	GCNNGC	2 cut(s)	47, 191
CfoI	GCGC	1 cut(s)	51
Csp6I	GTAC	1 cut(s)	274
CviAII	CATG	1 cut(s)	110
CviJI	RGCY	5 cut(s)	151, 172, 229, 292, 361
CviKI_1	RGCY	5 cut(s)	151, 172, 229, 292, 361
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	1 cut(s)	483
DpnI	GATC	2 cut(s)	129, 199
DpnII	GATC	2 cut(s)	127, 197
Eam1104I	CTCTTC	5 cut(s)	58, 141, 162, 179, 282
EarI	CTCTTC	5 cut(s)	58, 141, 162, 179, 282
Eco31I	GGTCTC	1 cut(s)	17
Eco88I	CYCGRG	1 cut(s)	356
EcoRII	CCWGG	1 cut(s)	209
FaeI	CATG	1 cut(s)	113
FaiI	YATR	5 cut(s)	111, 395, 404, 441, 450
FalI	AAGNNNNNCTT	2 cut(s)	315, 347
FatI	CATG	1 cut(s)	109
Fnu4HI	GCNGC	1 cut(s)	152
FokI	GGATG	2 cut(s)	137, 445
Fsp4HI	GCNGC	1 cut(s)	152
GlaI	GCGC	1 cut(s)	50
GluI	GCNGC	1 cut(s)	152
HapII	CCGG	2 cut(s)	173, 379
HhaI	GCGC	1 cut(s)	51
Hin1II	CATG	1 cut(s)	113
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HinfI	GANTC	2 cut(s)	264, 452
HpaII	CCGG	2 cut(s)	173, 379
HphI	GGTGA	3 cut(s)	40, 323, 484
Hpy188I	TCNGA	2 cut(s)	17, 106
Hpy188III	TCNNGA	3 cut(s)	320, 356, 379
HpyAV	CCTTC	2 cut(s)	317, 463
HpyCH4V	TGCA	2 cut(s)	154, 388
HpyF10VI	GCNNNNNNNGC	2 cut(s)	93, 358
HpyF3I	CTNAG	1 cut(s)	483
Hsp92II	CATG	1 cut(s)	113
HspAI	GCGC	1 cut(s)	49
Kpn2I	TCCGGA	1 cut(s)	378
Kzo9I	GATC	2 cut(s)	127, 197
LguI	GCTCTTC	4 cut(s)	141, 162, 179, 282
LmnI	GCTCC	1 cut(s)	255
LpnPI	CCDG	7 cut(s)	175, 186, 196, 223, 281, 384, 392
Lsp1109I	GCAGC	1 cut(s)	138
LweI	GCATC	3 cut(s)	163, 237, 361
MaeIII	GTNAC	2 cut(s)	133, 311
MalI	GATC	2 cut(s)	129, 199
MboI	GATC	2 cut(s)	127, 197
MboII	GAAGA	6 cut(s)	72, 75, 158, 179, 196, 299
MluCI	AATT	2 cut(s)	407, 456
MnlI	CCTC	8 cut(s)	24, 28, 112, 115, 188, 375, 420, 423
MroI	TCCGGA	1 cut(s)	378
MseI	TTAA	2 cut(s)	410, 416
MslI	CAYNNNNRTG	1 cut(s)	159
MspI	CCGG	2 cut(s)	173, 379
MspR9I	CCNGG	1 cut(s)	211
MvaI	CCWGG	1 cut(s)	211
MvnI	CGCG	2 cut(s)	51, 159
MwoI	GCNNNNNNNGC	2 cut(s)	93, 358
NdeII	GATC	2 cut(s)	127, 197
NlaIII	CATG	1 cut(s)	113
NmuCI	GTSAC	2 cut(s)	133, 311
NspV	TTCGAA	1 cut(s)	302
PaeR7I	CTCGAG	1 cut(s)	356
PciSI	GCTCTTC	4 cut(s)	141, 162, 179, 282
PcsI	WCGNNNNNNNCGW	2 cut(s)	282, 354
PfeI	GAWTC	2 cut(s)	264, 452
PkrI	GCNGC	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	209
PspGI	CCWGG	1 cut(s)	209
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
RseI	CAYNNNNRTG	1 cut(s)	159
SapI	GCTCTTC	4 cut(s)	141, 162, 179, 282
SaqAI	TTAA	2 cut(s)	410, 416
SatI	GCNGC	1 cut(s)	152
Sau3AI	GATC	2 cut(s)	127, 197
ScrFI	CCNGG	1 cut(s)	211
SetI	ASST	9 cut(s)	8, 153, 215, 231, 363, 386, 403, 416, 474
SfaNI	GCATC	3 cut(s)	163, 237, 361
Sfr274I	CTCGAG	1 cut(s)	356
SfuI	TTCGAA	1 cut(s)	302
SlaI	CTCGAG	1 cut(s)	356
SmiMI	CAYNNNNRTG	1 cut(s)	159
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	2 cut(s)	407, 456
SsiI	CCGC	3 cut(s)	159, 271, 309
StyD4I	CCNGG	1 cut(s)	209
TaqI	TCGA	5 cut(s)	165, 182, 245, 302, 357
TasI	AATT	2 cut(s)	407, 456
TfiI	GAWTC	2 cut(s)	264, 452
Tru1I	TTAA	2 cut(s)	410, 416
Tru9I	TTAA	2 cut(s)	410, 416
TseFI	GTSAC	2 cut(s)	133, 311
TseI	GCWGC	1 cut(s)	151
Tsp45I	GTSAC	2 cut(s)	133, 311
TspDTI	ATGAA	1 cut(s)	465
XhoI	CTCGAG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.