MD06G1126200.v1.1

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0007827
Physical Location & Seq
Forward (+)
26805269 .. 26807232
1964 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1126200.v1.1.491

Sequence Viewer

Length: 1044 bp
ATGCACACACCTCTCTCAACAGGTACATCTGGTTTTGGTTCTTCCAGTACTCCATCTTTCAGCTTTCCATTAACTCCTGCCTTTGGCCAATCAAGTTCTACATTTGGTAGCAGTCAATTTGTCGCTTCATCTCCTTTTGGAGCACAGAGTTCTCCATTTGGAGCTCAATCAACAACATTTGGGAACACTGGTGCATTTGGGCAGTCAGCTTTTGGGGGCCAGCAACGCGGGGGCAGTAGAGTGGTTGCATATGCTGCAACTCCTGAACCCGATGGTGGAAGTGGGAAATTGGAGTCAATATCAGCAATGCCAGCATATAAAGAAAAAAGTCATGAGGAACTCCGCTGGGAGGATTATCAATTGGGGGATAAAGGTGGTCCAGCTCCTGCTGGTGAGAGTGGGTTTGGCATTACTACCTCACAGCCAAACCCTTTGAATTATGCACAGACATTTCCTCAAGCATCAAGTCCTTTTGATGCCACAACTTCATCTAATTTGTTTGCTCCAAAAACTTCATCCCTCACTAATACAGGCTTCACAACAACGTCTACACCATTCAGTTCATCAAGTTTTGGAATTTCTACTTCAACCAGTCCTTTTACACCATCACAACCTTCTACAGTTTTCCCTCAAACCTCATCTCCGTCTCTCTTTAGTTCGTCAAGCTCTGCATTTTCATTTTCTTATCCGGCTGCTACAACAACTTCCACATTTAATTCAAATCCATTCAATCCCACACCTCAAGCTGCCCAGACAGGTGGTGCTTTTACCAGTCCATTTGGGCAGAATACAACTCCTTTTTCTCACCCATTCAGTAACCCTTTTTTGGGGGGCCAACAACTCGGGGGCAGTAGAGTGGTTGCATATGCTGCAACTCCTGAACCCGATGGTGGAAGTGGGAAATTTGAGTCAATATCAGCAATGCCAGCATATACAGAAAAAAGTCATGAAGAACTTCGCTGGGAGCAATGTTCTAAAAATCGGTTTAGGCGGCCGCTTAGGCGGTGCCTTTGCTCTAGGCGGTGCCTAAGCGCTAGGCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000972 GO:0000973 GO:0003674 GO:0003676 GO:0003682 GO:0003712 GO:0003713 GO:0003723 GO:0003729 GO:0005048 GO:0005198 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008139 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016032 GO:0016043 GO:0016234 GO:0016604 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0022607 GO:0031080 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033120 GO:0033218 GO:0033365 GO:0034397 GO:0034398 GO:0034399 GO:0034504 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0042277 GO:0042405 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044614 GO:0044615 GO:0045184 GO:0045935 GO:0046483 GO:0046907 GO:0046931 GO:0048024 GO:0048026 GO:0048518 GO:0048522 GO:0048583 GO:0050000 GO:0050657 GO:0050658 GO:0050684 GO:0050685 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051254 GO:0051276 GO:0051292 GO:0051640 GO:0051641 GO:0051649 GO:0051704 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1902446 GO:1902680 GO:1903311 GO:1903313 GO:1903506 GO:1903508 GO:1990841 GO:1990904 GO:2000030 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03013 ko05164 map03013 map05164
Pfam Domains
Protein Families
Nucleoporin2

Protein Analysis

348

Amino Acids

36.27

Weight (kDa)

8.93

Isoelectric Point (pI)

77.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nup98_GLEBS PF21240 99 - 119 8.2e-07 Nup98, Gle2-binding sequence
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1005, 1023
AccI GTMKAC 1 cut(s) 548
AccII CGCG 1 cut(s) 228
AciI CCGC 7 cut(s) 228, 343, 991, 995, 1003, 1021, 1039
AcoI YGGCCR 2 cut(s) 85, 992
AcsI RAATTY 2 cut(s) 576, 902
AfaI GTAC 2 cut(s) 25, 49
AfeI AGCGCT 1 cut(s) 1033
AfiI CCNNNNNNNGG 6 cut(s) 83, 275, 349, 826, 827, 890
AgsI TTSAA 4 cut(s) 436, 588, 720, 730
AluBI AGCT 6 cut(s) 63, 164, 209, 383, 666, 746
AluI AGCT 6 cut(s) 63, 164, 209, 383, 666, 746
Alw21I GWGCWC 2 cut(s) 145, 166
Alw26I GTCTC 1 cut(s) 651
AlwNI CAGNNNCTG 1 cut(s) 386
Ama87I CYCGRG 1 cut(s) 842
Aor51HI AGCGCT 1 cut(s) 1033
AoxI GGCC 4 cut(s) 85, 217, 832, 992
ApeKI GCWGC 4 cut(s) 254, 692, 746, 869
ApoI RAATTY 2 cut(s) 576, 902
Asp700I GAANNNNTTC 1 cut(s) 954
AspLEI GCGC 1 cut(s) 1034
AspS9I GGNCC 3 cut(s) 217, 377, 832
AsuHPI GGTGA 2 cut(s) 404, 797
AvaI CYCGRG 1 cut(s) 842
AvaII GGWCC 1 cut(s) 377
BalI TGGCCA 1 cut(s) 87
BanI GGYRCC 2 cut(s) 1005, 1023
BanII GRGCYC 1 cut(s) 166
Bbv12I GWGCWC 2 cut(s) 145, 166
BbvI GCAGC 4 cut(s) 241, 679, 733, 856
BccI CCATC 4 cut(s) 61, 266, 613, 881
BcoDI GTCTC 1 cut(s) 651
BfaI CTAG 2 cut(s) 1017, 1035
BfmI CTRYAG 1 cut(s) 618
BfoI RGCGCY 1 cut(s) 1035
BglI GCCNNNNNGGC 1 cut(s) 1000
BisI GCNGC 6 cut(s) 255, 693, 747, 870, 992, 995
BlsI GCNGC 6 cut(s) 256, 694, 748, 871, 993, 996
BmcAI AGTACT 1 cut(s) 49
Bme18I GGWCC 1 cut(s) 377
BmeT110I CYCGRG 1 cut(s) 842
BmgT120I GGNCC 3 cut(s) 217, 377, 832
BmiI GGNNCC 4 cut(s) 218, 833, 1007, 1025
BmsI GCATC 2 cut(s) 466, 470
Bpu10I CCTNAGC 2 cut(s) 998, 1028
BpuEI CTTGAG 2 cut(s) 441, 726
BsaXI ACNNNNNCTCC 2 cut(s) 625, 655
Bsc4I CCNNNNNNNGG 6 cut(s) 83, 275, 349, 826, 827, 890
Bse1I ACTGG 4 cut(s) 45, 193, 591, 771
Bse3DI GCAATG 3 cut(s) 312, 927, 974
BseGI GGATG 1 cut(s) 515
BseLI CCNNNNNNNGG 6 cut(s) 83, 275, 349, 826, 827, 890
BseMI GCAATG 3 cut(s) 312, 927, 974
BseNI ACTGG 4 cut(s) 45, 193, 591, 771
BseX3I CGGCCG 1 cut(s) 992
BseXI GCAGC 4 cut(s) 241, 679, 733, 856
BseYI CCCAGC 2 cut(s) 345, 960
Bsh1236I CGCG 1 cut(s) 228
Bsh1285I CGRYCG 1 cut(s) 995
BshFI GGCC 4 cut(s) 87, 219, 834, 994
BshNI GGYRCC 2 cut(s) 1005, 1023
BsiEI CGRYCG 1 cut(s) 995
BsiHKAI GWGCWC 2 cut(s) 145, 166
BsiHKCI CYCGRG 1 cut(s) 842
BsiSI CCGG 1 cut(s) 689
BslI CCNNNNNNNGG 6 cut(s) 83, 275, 349, 826, 827, 890
BsmAI GTCTC 1 cut(s) 651
BsmBI CGTCTC 1 cut(s) 651
BsnI GGCC 4 cut(s) 87, 219, 834, 994
BsoBI CYCGRG 1 cut(s) 842
Bsp1286I GDGCHC 2 cut(s) 145, 166
BspACI CCGC 7 cut(s) 228, 343, 991, 995, 1003, 1021, 1039
BspANI GGCC 4 cut(s) 87, 219, 834, 994
BspFNI CGCG 1 cut(s) 228
BspHI TCATGA 2 cut(s) 331, 946
BspLI GGNNCC 4 cut(s) 218, 833, 1007, 1025
BspT107I GGYRCC 2 cut(s) 1005, 1023
BsrDI GCAATG 3 cut(s) 312, 927, 974
BsrI ACTGG 4 cut(s) 45, 193, 591, 771
Bst4CI ACNGT 1 cut(s) 622
BstAPI GCANNNNNTGC 2 cut(s) 254, 869
BstC8I GCNNGC 3 cut(s) 221, 312, 927
BstDEI CTNAG 2 cut(s) 998, 1028
BstF5I GGATG 1 cut(s) 515
BstFNI CGCG 1 cut(s) 228
BstH2I RGCGCY 1 cut(s) 1035
BstHHI GCGC 1 cut(s) 1034
BstMAI GTCTC 1 cut(s) 651
BstMCI CGRYCG 1 cut(s) 995
BstMWI GCNNNNNNNGC 6 cut(s) 225, 254, 311, 869, 926, 1000
BstSFI CTRYAG 1 cut(s) 618
BstUI CGCG 1 cut(s) 228
BstV1I GCAGC 4 cut(s) 241, 679, 733, 856
BstXI CCANNNNNNTGG 1 cut(s) 758
BstZI CGGCCG 1 cut(s) 992
BsuRI GGCC 4 cut(s) 87, 219, 834, 994
BtsCI GGATG 1 cut(s) 515
BtsIMutI CAGTG 1 cut(s) 186
Cac8I GCNNGC 3 cut(s) 221, 312, 927
CaiI CAGNNNCTG 1 cut(s) 386
CciI TCATGA 2 cut(s) 331, 946
CciNI GCGGCCGC 1 cut(s) 992
CfoI GCGC 1 cut(s) 1034
Cfr13I GGNCC 3 cut(s) 217, 377, 832
Csp6I GTAC 2 cut(s) 24, 48
CviAII CATG 2 cut(s) 332, 947
CviQI GTAC 2 cut(s) 24, 48
DdeI CTNAG 2 cut(s) 998, 1028
EaeI YGGCCR 2 cut(s) 85, 992
EagI CGGCCG 1 cut(s) 992
Ecl136II GAGCTC 1 cut(s) 164
EclXI CGGCCG 1 cut(s) 992
Eco24I GRGCYC 1 cut(s) 166
Eco47I GGWCC 1 cut(s) 377
Eco47III AGCGCT 1 cut(s) 1033
Eco52I CGGCCG 1 cut(s) 992
Eco53kI GAGCTC 1 cut(s) 164
Eco88I CYCGRG 1 cut(s) 842
EcoICRI GAGCTC 1 cut(s) 164
EcoT38I GRGCYC 1 cut(s) 166
Esp3I CGTCTC 1 cut(s) 651
FaeI CATG 2 cut(s) 335, 950
FatI CATG 2 cut(s) 331, 946
FauI CCCGC 1 cut(s) 221
FauNDI CATATG 2 cut(s) 250, 865
FblI GTMKAC 1 cut(s) 548
Fnu4HI GCNGC 6 cut(s) 255, 693, 747, 870, 992, 995
FokI GGATG 1 cut(s) 502
FriOI GRGCYC 1 cut(s) 166
Fsp4HI GCNGC 6 cut(s) 255, 693, 747, 870, 992, 995
FspBI CTAG 2 cut(s) 1017, 1035
GlaI GCGC 1 cut(s) 1033
GluI GCNGC 6 cut(s) 255, 693, 747, 870, 992, 995
GsaI CCCAGC 2 cut(s) 349, 964
HaeII RGCGCY 1 cut(s) 1035
HaeIII GGCC 4 cut(s) 87, 219, 834, 994
HapII CCGG 1 cut(s) 689
HhaI GCGC 1 cut(s) 1034
Hin1II CATG 2 cut(s) 335, 950
Hin6I GCGC 1 cut(s) 1032
HinP1I GCGC 1 cut(s) 1032
HinfI GANTC 2 cut(s) 293, 908
HpaII CCGG 1 cut(s) 689
HphI GGTGA 2 cut(s) 404, 797
Hpy166II GTNNAC 1 cut(s) 549
Hpy188III TCNNGA 4 cut(s) 263, 332, 878, 947
Hpy8I GTNNAC 1 cut(s) 549
HpyAV CCTTC 1 cut(s) 624
HpyCH4III ACNGT 1 cut(s) 622
HpyCH4IV ACGT 1 cut(s) 545
HpyCH4V TGCA 8 cut(s) 4, 194, 248, 257, 443, 671, 863, 872
HpyF10VI GCNNNNNNNGC 6 cut(s) 225, 254, 311, 869, 926, 1000
HpyF3I CTNAG 2 cut(s) 998, 1028
HpySE526I ACGT 1 cut(s) 545
Hsp92II CATG 2 cut(s) 335, 950
HspAI GCGC 1 cut(s) 1032
LmnI GCTCC 5 cut(s) 140, 161, 388, 508, 964
Lsp1109I GCAGC 4 cut(s) 241, 679, 733, 856
LweI GCATC 2 cut(s) 466, 470
MaeI CTAG 2 cut(s) 1017, 1035
MaeII ACGT 1 cut(s) 545
MaeIII GTNAC 1 cut(s) 815
MboII GAAGA 2 cut(s) 33, 962
MfeI CAATTG 1 cut(s) 359
MhlI GDGCHC 2 cut(s) 145, 166
MlsI TGGCCA 1 cut(s) 87
MluCI AATT 8 cut(s) 116, 287, 359, 436, 493, 576, 715, 902
MluNI TGGCCA 1 cut(s) 87
MlyI GAGTC 2 cut(s) 302, 917
MnlI CCTC 9 cut(s) 21, 328, 343, 427, 465, 530, 639, 646, 750
Mox20I TGGCCA 1 cut(s) 87
MroXI GAANNNNTTC 1 cut(s) 954
MscI TGGCCA 1 cut(s) 87
MseI TTAA 2 cut(s) 71, 714
Msp20I TGGCCA 1 cut(s) 87
MspA1I CMGCKG 1 cut(s) 345
MspI CCGG 1 cut(s) 689
MunI CAATTG 1 cut(s) 359
MvnI CGCG 1 cut(s) 228
MwoI GCNNNNNNNGC 6 cut(s) 225, 254, 311, 869, 926, 1000
NdeI CATATG 2 cut(s) 250, 865
NlaIII CATG 2 cut(s) 335, 950
NlaIV GGNNCC 4 cut(s) 218, 833, 1007, 1025
NotI GCGGCCGC 1 cut(s) 992
PagI TCATGA 2 cut(s) 331, 946
PdmI GAANNNNTTC 1 cut(s) 954
PkrI GCNGC 6 cut(s) 256, 694, 748, 871, 993, 996
PleI GAGTC 2 cut(s) 301, 916
PpsI GAGTC 2 cut(s) 301, 916
Psp124BI GAGCTC 1 cut(s) 166
PspFI CCCAGC 2 cut(s) 345, 960
PspN4I GGNNCC 4 cut(s) 218, 833, 1007, 1025
PspPI GGNCC 3 cut(s) 217, 377, 832
PstNI CAGNNNCTG 1 cut(s) 386
RsaI GTAC 2 cut(s) 25, 49
RsaNI GTAC 2 cut(s) 24, 48
SacI GAGCTC 1 cut(s) 166
SaqAI TTAA 2 cut(s) 71, 714
SatI GCNGC 6 cut(s) 255, 693, 747, 870, 992, 995
Sau96I GGNCC 3 cut(s) 217, 377, 832
ScaI AGTACT 1 cut(s) 49
SchI GAGTC 2 cut(s) 302, 917
SduI GDGCHC 2 cut(s) 145, 166
SfaNI GCATC 2 cut(s) 466, 470
SfcI CTRYAG 1 cut(s) 618
SinI GGWCC 1 cut(s) 377
SmlI CTYRAG 2 cut(s) 456, 741
SmoI CTYRAG 2 cut(s) 456, 741
Sse9I AATT 8 cut(s) 116, 287, 359, 436, 493, 576, 715, 902
SsiI CCGC 7 cut(s) 228, 343, 991, 995, 1003, 1021, 1039
SspMI CTAG 2 cut(s) 1017, 1035
SstI GAGCTC 1 cut(s) 166
TaaI ACNGT 1 cut(s) 622
TaiI ACGT 1 cut(s) 548
TasI AATT 8 cut(s) 116, 287, 359, 436, 493, 576, 715, 902
TatI WGTACW 1 cut(s) 47
TauI GCSGC 2 cut(s) 994, 997
Tru1I TTAA 2 cut(s) 71, 714
Tru9I TTAA 2 cut(s) 71, 714
TscAI CASTG 1 cut(s) 193
TseI GCWGC 4 cut(s) 254, 692, 746, 869
TspDTI ATGAA 6 cut(s) 117, 477, 504, 552, 666, 963
TspGWI ACGGA 1 cut(s) 633
TspRI CASTG 1 cut(s) 193
VpaK11BI GGWCC 1 cut(s) 377
XapI RAATTY 2 cut(s) 576, 902
XmiI GTMKAC 1 cut(s) 548
XmnI GAANNNNTTC 1 cut(s) 954
XspI CTAG 2 cut(s) 1017, 1035
ZrmI AGTACT 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.