Rw7G007880

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0007827
Physical Location & Seq
Forward (+)
7216279 .. 7231490
15212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G007880.1

Sequence Viewer

Length: 3021 bp
ATGTTTGGTTCTACGAGCCCTTTTGGGCAGTCATCTAACAGCCCATTTGGGTCCCAATCGGTGTTTGGGCAAAGCAGCAACACAAGTAACAATCCTTTTGCTCCCCAGCCCTTTGGTAGCACCACTCCATTTGGTGCCCAGACAGGGAGTTCTCTAATTTGGGGTACTTCAACTGGCGTATTTGGTCAAACCCAATCCTCCCCTTTTGGTGCTTCATCCTCGCCAGCTTTCGGACAGCACAGTTCTCCATTTGGAGCATCTTCTACTCCAGCATTTGGTGCACCATCATCTACTCAAACAAGTCCATTTGGTGGAGCATTTGCATCTGGTACGTCTGCTTTTGGTCAGAAGCCCGCTTTTGGAGCATTTGGGTCGAGTCCTGCTCAAACAAGTCCATTTGGAAGCACAGCTCAACCATCACAACCAGCATTTGGAAGCAATATGTTTGGTACCACCCCTACAGCATTTGGCGCAAGTCAGCCTGCATTTGGCACTAATACTGCCCCAGCCTTTGGTTCAACGAATGCCACAGGCTTTGGTGGCCAGAGCACCCCTGGTTTTGGTGGCCAAGGCACTCCAGCCTTTGGGGCCACAAGCGCTTCACCTTTTGGTAGTACAAGTACTCCGGCGTTTGGTGCTCCAAGTACTCCTACCTTTGGCTCAACACCAAGTCCTACATTTGGAAGCACAGGATCTGCATTTGGGACAACAAGTTCCAACTTGTTTGGATCAGGGGGAGCATTTGGGGCTTCAACCACCCCAGCTTTTGGTCAATCTAGCTCAGCTTTTGGTACTACAACAAGTGCTCCTGCTTTTGGTCAATCAAGTTCAGGTTTTGGCTTTTCAACAAGTGCTCCTGCATTTGGCCAATCAAGTTCAACCTTTGGTAGCACCCAATTTGCGGCTTCATCTCCTTTCGGATCGCAGAGTTCGCCATCTCCTTTCGGAGGGCAGAGTTCGCCATTTGGTGAGTATCTAAGATGGGCTCAGTCAACAACACCAACACTTGGAAACACTGCCTTTGGACAGCCAGCTTTTGGGGGCCAACGGGGTGGAAGTAGAGTGGCTGCTTACACAGGCACATCTGAACCAGATAGTAATGGAATGGGGAAATTGGAGTCAATATCAGCAATGCCAGCCTATAAAGAAAAAAGTCACGAGGAATTGAGATGGGAGGATTACCAATTAGGGGATAAGGGTGGACCGTCTCCTGCTGGTGCGGGTAGCTTTGGTGTATCAACTGTTCAGACAAGTACTTTGAATCCTAATCCTGCACCATCGTTTTCTCAAACATCTTCAAGTCCTTTTAATACCTCAACCTCATCTGGTTTATTTGCCCAAAAACCCTCATCCTTTCCTTCTACTGGTTTTGGTGTTACTTCACTCTTCATCTCACCATTTAGTTCAAACTTCACCACCGTTTACTGCGTCACCATTTGGCCAACGGCGTCTCCAGCTATTTTTAGTTCACCATCTTCCTTTTCATTCTCTACCCCAGCTACATCATCCACTCCCTCATTTAATTTTCCCACCCCATCAAACCCACAGACACAGTTTGGTCAAACAGGCACTACCTCCTTTGGGCTGAATCCATCTACCTTTGGTTCAAACTTGTTCAATAGTACTTCCAGTTTGCAGAGCAGTTCATTGGGCACTACCAGCAACCAACTGGGTCTTACTCAAGCAGCTCCTGCTTTTCCTACTTTCCAGACATCTCAGCCTCTTCAGTCTAGTCTTTTTGGCTTCAGCAACACCAATGCCTTCAACAACACCAACACCTTTAATCAACCCCAGCCAGGCAACACAGGTGCTTTTGGTGGTTTAGCAGGCATTTCTGGTCAGAACAACTTTGGACAATCGTCTGTCACTCAAGGCTCTGCAGCTGTACAACAACCAGTACCTGCTACAAATCCATTTGGAACGCTCCCTGCGATGCCTCAGATGTCAATTGGTCGTGGGGGAACTGCACCATCAATTCAATATGGAATTTCAAGCATGCCTGTTGCGGATAAACCTGCGCCCGTTAGGGTAACATCCATCCTGACTCCTCGACACCTGTCACAACGCCGGATCAGATTACCTGCAAGAAAATATAATCCTAAGAATGATAACCCAAAGGCTTTTTTTAGTGATGATGAAGAAACACCCTCTACACCCAAGGGGGATGTTGTTTTCCATCCCAGGGAAAACCCAAGAGCACTTGTCATTCGTCCCCAGGAACAGTGGCCTCTAAGAGCGAGTGCTGAGAAAGCAACAGCACTGAAGAATGCCCATGAGAATGGAAAAATTTCGGGAGCAGCACTCTTCGGGGGATCCAACTCTGAGGATAAAGACGAAACTCTGCAAGAAAATGGTGCTGTCAAGGAGCATTTAAATCATGTCAAGGCTAATCAGAAACCTAATGGAGTACATGATGATCACTCTATTCAGAAAGGGGACTCGTATACAACACTAAGTGGGCACAGAGCTGGTGAGGCTGCAATTGTGTATGAGCATGGTGCTGACATTGAGGCACAAATGCCGAAGCTCCGACGCTCTGATTACTACACAGAGCCCCGAATCCAAGAACTGGCGGCAAAGGAAAGGGCAGAGCCAGGGTTCTGCTGTCGTGTGAAGGACTTTGTGGTTGGGCGACATGGTTGTGGTAGCATTAAGTTCTTGGGTGAGACAGATGTAAGGCGCCTTGATCTTGAGGCTCTGGTGCAGTTCAATAATAAGGAGGTAATCGTGTACCGTGATGAGAACAAGAAGCCTCCTGTCGGGCAAGGGCTTAATAAACCTGCTGAGGTTACACTTCTCAACATTAAATGCATTGAGAAGAAGACTGGGCTTCAGTATACAGAAGGACCAAAAGTTGAGAAATACAAGGAGATGCTGAAGAGGAAGGCCGAGGAACAAGGTGCCAAGTTTGTCTCCTTTGACCCAAAGAAGGAAGAGTGGACGTTCATGGTCGACCACTTCAGTGAGTACAAGTTGAGAGATGAAGACGACTGGGATGTGGATGCTGCCCAAGATTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000972 GO:0000973 GO:0003674 GO:0003676 GO:0003682 GO:0003712 GO:0003713 GO:0003723 GO:0003729 GO:0005048 GO:0005198 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008139 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016032 GO:0016043 GO:0016234 GO:0016604 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0022607 GO:0031080 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033120 GO:0033218 GO:0033365 GO:0034397 GO:0034398 GO:0034399 GO:0034504 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0042277 GO:0042405 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044614 GO:0044615 GO:0045184 GO:0045935 GO:0046483 GO:0046907 GO:0046931 GO:0048024 GO:0048026 GO:0048518 GO:0048522 GO:0048583 GO:0050000 GO:0050657 GO:0050658 GO:0050684 GO:0050685 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051254 GO:0051276 GO:0051292 GO:0051640 GO:0051641 GO:0051649 GO:0051704 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1902446 GO:1902680 GO:1903311 GO:1903313 GO:1903506 GO:1903508 GO:1990841 GO:1990904 GO:2000030 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03013 ko05164 map03013 map05164
Pfam Domains
Protein Families
Nucleoporin2

Protein Analysis

1006

Amino Acids

104.76

Weight (kDa)

7.21

Isoelectric Point (pI)

54.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nup98_GLEBS PF21240 375 - 394 3.3e-06 Nup98, Gle2-binding sequence
Nucleoporin2 PF04096 846 - 992 2.7e-44 Nup98-96 autopeptidase S59
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 4 cut(s) 1909, 2023, 2089, 2788
Acc65I GGTACC 1 cut(s) 449
AccB1I GGYRCC 4 cut(s) 134, 449, 2679, 2900
AccB7I CCANNNNNTGG 9 cut(s) 275, 311, 431, 512, 584, 767, 1007, 1037, 2569
AccI GTMKAC 3 cut(s) 2444, 2837, 2952
AciI CCGC 5 cut(s) 354, 902, 1220, 2006, 2573
AclWI GGATC 6 cut(s) 700, 736, 928, 2078, 2307, 2320
AcoI YGGCCR 4 cut(s) 541, 565, 865, 1439
AcsI RAATTY 2 cut(s) 1986, 2286
AcuI CTGAAG 6 cut(s) 1709, 1729, 2282, 2816, 2897, 2944
AcyI GRCGYC 2 cut(s) 1448, 2680
AdeI CACNNNGTG 1 cut(s) 2456
AfeI AGCGCT 1 cut(s) 598
AjnI CCWGG 5 cut(s) 553, 1795, 2180, 2214, 2593
AleI CACNNNNGTG 1 cut(s) 2961
AloI GAACNNNNNNTCC 2 cut(s) 697, 729
Alw21I GWGCWC 6 cut(s) 283, 551, 640, 808, 856, 2200
Alw26I GTCTC 4 cut(s) 1212, 1455, 2660, 2917
Alw44I GTGCAC 1 cut(s) 279
AlwI GGATC 6 cut(s) 700, 736, 928, 2078, 2307, 2320
AlwNI CAGNNNCTG 3 cut(s) 695, 1691, 1901
Aor51HI AGCGCT 1 cut(s) 598
AoxI GGCC 8 cut(s) 541, 565, 588, 865, 1042, 1439, 2225, 2886
ApaLI GTGCAC 1 cut(s) 279
ApeKI GCWGC 7 cut(s) 75, 1067, 1685, 1880, 2297, 2477, 3005
ApoI RAATTY 2 cut(s) 1986, 2286
ArsI GACNNNNNNTTYG 2 cut(s) 1240, 1272
Asp700I GAANNNNTTC 1 cut(s) 2287
Asp718I GGTACC 1 cut(s) 449
AspLEI GCGC 4 cut(s) 473, 599, 2020, 2682
AspS9I GGNCC 5 cut(s) 51, 588, 1042, 1202, 2846
AsuHPI GGTGA 8 cut(s) 594, 980, 1386, 1405, 1423, 1461, 2483, 2675
AvaII GGWCC 3 cut(s) 51, 1202, 2846
BaeGI GKGCMC 4 cut(s) 139, 283, 1655, 2463
BalI TGGCCA 4 cut(s) 543, 567, 867, 1441
BamHI GGATCC 1 cut(s) 2312
BanI GGYRCC 4 cut(s) 134, 449, 2679, 2900
BanII GRGCYC 3 cut(s) 20, 988, 2556
BauI CACGAG 1 cut(s) 1157
BbsI GAAGAC 2 cut(s) 2828, 2991
Bbv12I GWGCWC 6 cut(s) 283, 551, 640, 808, 856, 2200
BbvCI CCTCAGC 1 cut(s) 2784
BbvI GCAGC 7 cut(s) 87, 1054, 1697, 1892, 2309, 2464, 2992
BceAI ACGGC 1 cut(s) 1461
BcgI CGANNNNNNTGC 2 cut(s) 354, 388
BciT130I CCWGG 5 cut(s) 555, 1797, 2182, 2216, 2595
BclI TGATCA 1 cut(s) 2416
BcoDI GTCTC 4 cut(s) 1212, 1455, 2660, 2917
BfaI CTAG 2 cut(s) 777, 1731
BfmI CTRYAG 2 cut(s) 459, 1878
BfoI RGCGCY 2 cut(s) 600, 2683
BfuAI ACCTGC 4 cut(s) 1909, 2023, 2089, 2788
BglI GCCNNNNNGGC 1 cut(s) 587
BisI GCNGC 9 cut(s) 76, 903, 1068, 1686, 1881, 2298, 2478, 2574, 3006
BlpI GCTNAGC 1 cut(s) 781
BlsI GCNGC 9 cut(s) 77, 904, 1069, 1687, 1882, 2299, 2479, 2575, 3007
BmcAI AGTACT 4 cut(s) 622, 646, 1255, 1624
Bme1390I CCNGG 5 cut(s) 555, 1797, 2182, 2216, 2595
Bme18I GGWCC 3 cut(s) 51, 1202, 2846
BmgT120I GGNCC 5 cut(s) 51, 588, 1042, 1202, 2846
BmiI GGNNCC 9 cut(s) 52, 53, 136, 451, 589, 1043, 2314, 2681, 2902
BmrFI CCNGG 5 cut(s) 555, 1797, 2182, 2216, 2595
BmrI ACTGGG 3 cut(s) 1679, 2835, 3001
BmsI GCATC 5 cut(s) 266, 332, 1923, 2862, 2992
BmuI ACTGGG 3 cut(s) 1679, 2835, 3001
BoxI GACNNNNGTC 2 cut(s) 1858, 2056
BpiI GAAGAC 2 cut(s) 2828, 2991
BplI GAGNNNNNCTC 4 cut(s) 367, 399, 2286, 2318
BpmI CTGGAG 3 cut(s) 252, 561, 1437
Bpu10I CCTNAGC 1 cut(s) 2784
Bpu1102I GCTNAGC 1 cut(s) 781
BpuEI CTTGAG 3 cut(s) 1665, 1854, 2711
BsaHI GRCGYC 2 cut(s) 1448, 2680
BsaJI CCNNGG 8 cut(s) 553, 568, 2157, 2180, 2181, 2214, 2594, 2889
BsaXI ACNNNNNCTCC 8 cut(s) 607, 637, 790, 820, 838, 868, 1435, 1465
Bse1I ACTGG 8 cut(s) 178, 1369, 1629, 1674, 1895, 2574, 2830, 2996
Bse3DI GCAATG 1 cut(s) 1137
BseBI CCWGG 5 cut(s) 555, 1797, 2182, 2216, 2595
BseDI CCNNGG 8 cut(s) 553, 568, 2157, 2180, 2181, 2214, 2594, 2889
BseGI GGATG 9 cut(s) 215, 1349, 1505, 2033, 2037, 2170, 2176, 3001, 3007
BseMI GCAATG 1 cut(s) 1137
BseMII CTCAG 7 cut(s) 795, 1001, 1730, 1952, 2235, 2313, 2775
BseNI ACTGG 8 cut(s) 178, 1369, 1629, 1674, 1895, 2574, 2830, 2996
BseRI GAGGAG 1 cut(s) 2037
BseSI GKGCMC 4 cut(s) 139, 283, 1655, 2463
BseXI GCAGC 7 cut(s) 87, 1054, 1697, 1892, 2309, 2464, 2992
BseYI CCCAGC 5 cut(s) 105, 505, 760, 1495, 1791
BsgI GTGCAG 3 cut(s) 1257, 1950, 2723
BshFI GGCC 8 cut(s) 543, 567, 590, 867, 1044, 1441, 2227, 2888
BshNI GGYRCC 4 cut(s) 134, 449, 2679, 2900
BsiHKAI GWGCWC 6 cut(s) 283, 551, 640, 808, 856, 2200
BsiSI CCGG 2 cut(s) 626, 2068
BslFI GGGAC 4 cut(s) 37, 718, 2196, 2450
BsmAI GTCTC 4 cut(s) 1212, 1455, 2660, 2917
BsmBI CGTCTC 2 cut(s) 1212, 1455
BsmFI GGGAC 4 cut(s) 37, 718, 2196, 2450
BsmI GAATGC 2 cut(s) 529, 2272
BsnI GGCC 8 cut(s) 543, 567, 590, 867, 1044, 1441, 2227, 2888
Bsp1407I TGTACA 1 cut(s) 1885
Bsp143I GATC 7 cut(s) 692, 728, 920, 2070, 2312, 2416, 2686
Bsp1720I GCTNAGC 1 cut(s) 781
BspACI CCGC 5 cut(s) 354, 902, 1220, 2006, 2573
BspANI GGCC 8 cut(s) 543, 567, 590, 867, 1044, 1441, 2227, 2888
BspCNI CTCAG 7 cut(s) 794, 1000, 1729, 1951, 2236, 2314, 2776
BspLI GGNNCC 9 cut(s) 52, 53, 136, 451, 589, 1043, 2314, 2681, 2902
BspMAI CTGCAG 1 cut(s) 1882
BspMI ACCTGC 4 cut(s) 1909, 2023, 2089, 2788
BspPI GGATC 6 cut(s) 700, 736, 928, 2078, 2307, 2320
BspT107I GGYRCC 4 cut(s) 134, 449, 2679, 2900
BsrDI GCAATG 1 cut(s) 1137
BsrGI TGTACA 1 cut(s) 1885
BsrI ACTGG 8 cut(s) 178, 1369, 1629, 1674, 1895, 2574, 2830, 2996
BssECI CCNNGG 8 cut(s) 553, 568, 2157, 2180, 2181, 2214, 2594, 2889
BssMI GATC 7 cut(s) 692, 728, 920, 2070, 2312, 2416, 2686
BssNAI GTATAC 2 cut(s) 2445, 2838
BssNI GRCGYC 2 cut(s) 1448, 2680
BssSI CACGAG 1 cut(s) 1157
BssT1I CCWWGG 2 cut(s) 568, 2157
Bst1107I GTATAC 2 cut(s) 2445, 2838
Bst2BI CACGAG 1 cut(s) 1157
Bst2UI CCWGG 5 cut(s) 555, 1797, 2182, 2216, 2595
Bst4CI ACNGT 7 cut(s) 242, 1206, 1243, 1420, 1554, 2223, 2735
Bst6I CTCTTC 5 cut(s) 1391, 1728, 2309, 2873, 2928
BstACI GRCGYC 2 cut(s) 1448, 2680
BstAPI GCANNNNNTGC 2 cut(s) 278, 1691
BstAUI TGTACA 1 cut(s) 1885
BstC8I GCNNGC 7 cut(s) 225, 354, 483, 1032, 1137, 1828, 1997
BstENI CCTNNNNNAGG 1 cut(s) 945
BstF5I GGATG 9 cut(s) 215, 1349, 1505, 2033, 2037, 2170, 2176, 3001, 3007
BstH2I RGCGCY 2 cut(s) 600, 2683
BstHHI GCGC 4 cut(s) 473, 599, 2020, 2682
BstKTI GATC 7 cut(s) 695, 731, 923, 2073, 2315, 2419, 2689
BstMAI GTCTC 4 cut(s) 1212, 1455, 2660, 2917
BstMBI GATC 7 cut(s) 692, 728, 920, 2070, 2312, 2416, 2686
BstNI CCWGG 5 cut(s) 555, 1797, 2182, 2216, 2595
BstNSI RCATGY 1 cut(s) 1999
BstPAI GACNNNNGTC 2 cut(s) 1858, 2056
BstSCI CCNGG 5 cut(s) 553, 1795, 2180, 2214, 2593
BstSFI CTRYAG 2 cut(s) 459, 1878
BstSLI GKGCMC 4 cut(s) 139, 283, 1655, 2463
BstV1I GCAGC 7 cut(s) 87, 1054, 1697, 1892, 2309, 2464, 2992
BstV2I GAAGAC 2 cut(s) 2828, 2991
BstX2I RGATCY 2 cut(s) 692, 2312
BstXI CCANNNNNNTGG 3 cut(s) 113, 1052, 2279
BstYI RGATCY 2 cut(s) 692, 2312
BstZ17I GTATAC 2 cut(s) 2445, 2838
BsuRI GGCC 8 cut(s) 543, 567, 590, 867, 1044, 1441, 2227, 2888
BtgZI GCGATG 1 cut(s) 1946
BtsCI GGATG 9 cut(s) 215, 1349, 1505, 2033, 2037, 2170, 2176, 3001, 3007
BtsI GCAGTG 1 cut(s) 1014
BtsIMutI CAGTG 4 cut(s) 1014, 2228, 2258, 2968
BveI ACCTGC 4 cut(s) 1909, 2023, 2089, 2788
Cac8I GCNNGC 7 cut(s) 225, 354, 483, 1032, 1137, 1828, 1997
CaiI CAGNNNCTG 3 cut(s) 695, 1691, 1901
CfoI GCGC 4 cut(s) 473, 599, 2020, 2682
Cfr13I GGNCC 5 cut(s) 51, 588, 1042, 1202, 2846
CseI GACGC 3 cut(s) 1417, 1437, 2541
CspCI CAANNNNNGTGG 4 cut(s) 112, 147, 517, 552
CviAII CATG 7 cut(s) 1996, 2273, 2378, 2411, 2495, 2636, 2947
DinI GGCGCC 1 cut(s) 2681
DpnI GATC 7 cut(s) 694, 730, 922, 2072, 2314, 2418, 2688
DpnII GATC 7 cut(s) 692, 728, 920, 2070, 2312, 2416, 2686
DraI TTTAAA 1 cut(s) 2373
DraIII CACNNNGTG 1 cut(s) 2456
EaeI YGGCCR 4 cut(s) 541, 565, 865, 1439
Eam1104I CTCTTC 5 cut(s) 1391, 1728, 2309, 2873, 2928
EarI CTCTTC 5 cut(s) 1391, 1728, 2309, 2873, 2928
Eco130I CCWWGG 2 cut(s) 568, 2157
Eco24I GRGCYC 3 cut(s) 20, 988, 2556
Eco47I GGWCC 3 cut(s) 51, 1202, 2846
Eco47III AGCGCT 1 cut(s) 598
Eco57I CTGAAG 6 cut(s) 1709, 1729, 2282, 2816, 2897, 2944
EcoNI CCTNNNNNAGG 1 cut(s) 945
EcoO109I RGGNCCY 1 cut(s) 51
EcoRII CCWGG 5 cut(s) 553, 1795, 2180, 2214, 2593
EcoT14I CCWWGG 2 cut(s) 568, 2157
EcoT22I ATGCAT 1 cut(s) 2813
EcoT38I GRGCYC 3 cut(s) 20, 988, 2556
EgeI GGCGCC 1 cut(s) 2681
EheI GGCGCC 1 cut(s) 2681
ErhI CCWWGG 2 cut(s) 568, 2157
Esp3I CGTCTC 2 cut(s) 1212, 1455
FaeI CATG 7 cut(s) 1999, 2276, 2381, 2414, 2498, 2639, 2950
FaqI GGGAC 4 cut(s) 37, 718, 2196, 2450
FatI CATG 7 cut(s) 1995, 2272, 2377, 2410, 2494, 2635, 2946
FauI CCCGC 2 cut(s) 361, 1213
FbaI TGATCA 1 cut(s) 2416
FblI GTMKAC 3 cut(s) 2444, 2837, 2952
Fnu4HI GCNGC 9 cut(s) 76, 903, 1068, 1686, 1881, 2298, 2478, 2574, 3006
FokI GGATG 9 cut(s) 202, 1336, 1492, 2020, 2024, 2163, 2177, 3008, 3014
FriOI GRGCYC 3 cut(s) 20, 988, 2556
Fsp4HI GCNGC 9 cut(s) 76, 903, 1068, 1686, 1881, 2298, 2478, 2574, 3006
FspBI CTAG 2 cut(s) 777, 1731
GlaI GCGC 4 cut(s) 472, 598, 2019, 2681
GluI GCNGC 9 cut(s) 76, 903, 1068, 1686, 1881, 2298, 2478, 2574, 3006
GsaI CCCAGC 5 cut(s) 109, 509, 764, 1499, 1795
GsuI CTGGAG 3 cut(s) 252, 561, 1437
HaeII RGCGCY 2 cut(s) 600, 2683
HaeIII GGCC 8 cut(s) 543, 567, 590, 867, 1044, 1441, 2227, 2888
HapII CCGG 2 cut(s) 626, 2068
HgaI GACGC 3 cut(s) 1417, 1437, 2541
HhaI GCGC 4 cut(s) 473, 599, 2020, 2682
Hin1I GRCGYC 2 cut(s) 1448, 2680
Hin1II CATG 7 cut(s) 1999, 2276, 2381, 2414, 2498, 2639, 2950
Hin6I GCGC 4 cut(s) 471, 597, 2018, 2680
HinP1I GCGC 4 cut(s) 471, 597, 2018, 2680
HincII GTYRAC 2 cut(s) 993, 2953
HindII GTYRAC 2 cut(s) 993, 2953
HinfI GANTC 7 cut(s) 376, 1118, 1261, 1588, 2044, 2438, 2559
HpaII CCGG 2 cut(s) 626, 2068
HphI GGTGA 8 cut(s) 594, 980, 1386, 1405, 1423, 1461, 2483, 2675
Hpy188III TCNNGA 5 cut(s) 1157, 1708, 2041, 2292, 2690
Hpy99I CGWCG 1 cut(s) 2535
HpyAV CCTTC 6 cut(s) 1368, 1771, 2608, 2837, 2878, 2923
HpyCH4III ACNGT 7 cut(s) 242, 1206, 1243, 1420, 1554, 2223, 2735
HpyCH4IV ACGT 2 cut(s) 332, 2942
HpySE526I ACGT 2 cut(s) 332, 2942
Hsp92I GRCGYC 2 cut(s) 1448, 2680
Hsp92II CATG 7 cut(s) 1999, 2276, 2381, 2414, 2498, 2639, 2950
HspAI GCGC 4 cut(s) 471, 597, 2018, 2680
KasI GGCGCC 1 cut(s) 2679
KflI GGGWCCC 1 cut(s) 51
KpnI GGTACC 1 cut(s) 453
Ksp22I TGATCA 1 cut(s) 2416
Kzo9I GATC 7 cut(s) 692, 728, 920, 2070, 2312, 2416, 2686
Lsp1109I GCAGC 7 cut(s) 87, 1054, 1697, 1892, 2309, 2464, 2992
LweI GCATC 5 cut(s) 266, 332, 1923, 2862, 2992
MaeI CTAG 2 cut(s) 777, 1731
MaeII ACGT 2 cut(s) 332, 2942
MaeIII GTNAC 8 cut(s) 86, 1154, 1375, 1429, 1864, 2029, 2058, 2788
MalI GATC 7 cut(s) 694, 730, 922, 2072, 2314, 2418, 2688
MboI GATC 7 cut(s) 692, 728, 920, 2070, 2312, 2416, 2686
MfeI CAATTG 2 cut(s) 1947, 2481
MflI RGATCY 2 cut(s) 692, 2312
MlsI TGGCCA 4 cut(s) 543, 567, 867, 1441
MluNI TGGCCA 4 cut(s) 543, 567, 867, 1441
Mly113I GGCGCC 1 cut(s) 2680
MlyI GAGTC 4 cut(s) 385, 1127, 2038, 2432
MmeI TCCRAC 3 cut(s) 741, 2340, 2554
Mox20I TGGCCA 4 cut(s) 543, 567, 867, 1441
Mph1103I ATGCAT 1 cut(s) 2813
MroXI GAANNNNTTC 1 cut(s) 2287
MscI TGGCCA 4 cut(s) 543, 567, 867, 1441
MseI TTAA 7 cut(s) 1308, 1521, 1782, 2372, 2652, 2772, 2805
MslI CAYNNNNRTG 3 cut(s) 2277, 2640, 2961
Msp20I TGGCCA 4 cut(s) 543, 567, 867, 1441
MspA1I CMGCKG 1 cut(s) 1883
MspI CCGG 2 cut(s) 626, 2068
MspR9I CCNGG 5 cut(s) 555, 1797, 2182, 2216, 2595
MunI CAATTG 2 cut(s) 1947, 2481
Mva1269I GAATGC 2 cut(s) 529, 2272
MvaI CCWGG 5 cut(s) 555, 1797, 2182, 2216, 2595
NarI GGCGCC 1 cut(s) 2680
NdeII GATC 7 cut(s) 692, 728, 920, 2070, 2312, 2416, 2686
NlaIII CATG 7 cut(s) 1999, 2276, 2381, 2414, 2498, 2639, 2950
NlaIV GGNNCC 9 cut(s) 52, 53, 136, 451, 589, 1043, 2314, 2681, 2902
NmeAIII GCCGAG 1 cut(s) 2914
NmuCI GTSAC 4 cut(s) 1154, 1429, 1864, 2058
NsiI ATGCAT 1 cut(s) 2813
NspI RCATGY 1 cut(s) 1999
OliI CACNNNNGTG 1 cut(s) 2961
PaeI GCATGC 1 cut(s) 1999
PasI CCCWGGG 1 cut(s) 2181
PcsI WCGNNNNNNNCGW 1 cut(s) 1928
PctI GAATGC 2 cut(s) 529, 2272
PdmI GAANNNNTTC 1 cut(s) 2287
PfeI GAWTC 3 cut(s) 1261, 1588, 2559
PflMI CCANNNNNTGG 9 cut(s) 275, 311, 431, 512, 584, 767, 1007, 1037, 2569
PkrI GCNGC 9 cut(s) 77, 904, 1069, 1687, 1882, 2299, 2479, 2575, 3007
PleI GAGTC 4 cut(s) 384, 1126, 2038, 2432
PluTI GGCGCC 1 cut(s) 2683
PpsI GAGTC 4 cut(s) 384, 1126, 2038, 2432
PpuMI RGGWCCY 1 cut(s) 51
PshAI GACNNNNGTC 2 cut(s) 1858, 2056
Psp5II RGGWCCY 1 cut(s) 51
Psp6I CCWGG 5 cut(s) 553, 1795, 2180, 2214, 2593
PspFI CCCAGC 5 cut(s) 105, 505, 760, 1495, 1791
PspGI CCWGG 5 cut(s) 553, 1795, 2180, 2214, 2593
PspN4I GGNNCC 9 cut(s) 52, 53, 136, 451, 589, 1043, 2314, 2681, 2902
PspPI GGNCC 5 cut(s) 51, 588, 1042, 1202, 2846
PspPPI RGGWCCY 1 cut(s) 51
PsrI GAACNNNNNNTAC 2 cut(s) 1227, 1259
PstI CTGCAG 1 cut(s) 1882
PstNI CAGNNNCTG 3 cut(s) 695, 1691, 1901
PsuI RGATCY 2 cut(s) 692, 2312
PvuII CAGCTG 1 cut(s) 1883
RseI CAYNNNNRTG 3 cut(s) 2277, 2640, 2961
SalI GTCGAC 1 cut(s) 2951
SaqAI TTAA 7 cut(s) 1308, 1521, 1782, 2372, 2652, 2772, 2805
SatI GCNGC 9 cut(s) 76, 903, 1068, 1686, 1881, 2298, 2478, 2574, 3006
Sau3AI GATC 7 cut(s) 692, 728, 920, 2070, 2312, 2416, 2686
Sau96I GGNCC 5 cut(s) 51, 588, 1042, 1202, 2846
ScaI AGTACT 4 cut(s) 622, 646, 1255, 1624
SchI GAGTC 4 cut(s) 385, 1127, 2038, 2432
ScrFI CCNGG 5 cut(s) 555, 1797, 2182, 2216, 2595
SfaNI GCATC 5 cut(s) 266, 332, 1923, 2862, 2992
SfcI CTRYAG 2 cut(s) 459, 1878
SfoI GGCGCC 1 cut(s) 2681
SinI GGWCC 3 cut(s) 51, 1202, 2846
SmiI ATTTAAAT 1 cut(s) 2373
SmiMI CAYNNNNRTG 3 cut(s) 2277, 2640, 2961
SmlI CTYRAG 3 cut(s) 1680, 1869, 2690
SmoI CTYRAG 3 cut(s) 1680, 1869, 2690
SphI GCATGC 1 cut(s) 1999
SsiI CCGC 5 cut(s) 354, 902, 1220, 2006, 2573
SspDI GGCGCC 1 cut(s) 2679
SspMI CTAG 2 cut(s) 777, 1731
StyD4I CCNGG 5 cut(s) 553, 1795, 2180, 2214, 2593
StyI CCWWGG 2 cut(s) 568, 2157
SwaI ATTTAAAT 1 cut(s) 2373
TaaI ACNGT 7 cut(s) 242, 1206, 1243, 1420, 1554, 2223, 2735
TaiI ACGT 2 cut(s) 335, 2945
TaqI TCGA 3 cut(s) 374, 2050, 2952
TatI WGTACW 8 cut(s) 614, 620, 644, 1253, 1622, 1885, 2407, 2967
TauI GCSGC 2 cut(s) 905, 2576
TfiI GAWTC 3 cut(s) 1261, 1588, 2559
Tru1I TTAA 7 cut(s) 1308, 1521, 1782, 2372, 2652, 2772, 2805
Tru9I TTAA 7 cut(s) 1308, 1521, 1782, 2372, 2652, 2772, 2805
TscAI CASTG 4 cut(s) 1021, 2228, 2265, 2968
TseFI GTSAC 4 cut(s) 1154, 1429, 1864, 2058
TseI GCWGC 7 cut(s) 75, 1067, 1685, 1880, 2297, 2477, 3005
Tsp45I GTSAC 4 cut(s) 1154, 1429, 1864, 2058
TspDTI ATGAA 8 cut(s) 204, 897, 1378, 1473, 1635, 2151, 2935, 2997
TspRI CASTG 4 cut(s) 1021, 2228, 2265, 2968
Van91I CCANNNNNTGG 9 cut(s) 275, 311, 431, 512, 584, 767, 1007, 1037, 2569
VneI GTGCAC 1 cut(s) 279
VpaK11BI GGWCC 3 cut(s) 51, 1202, 2846
XagI CCTNNNNNAGG 1 cut(s) 945
XapI RAATTY 2 cut(s) 1986, 2286
XceI RCATGY 1 cut(s) 1999
XcmI CCANNNNNNNNNTGG 3 cut(s) 62, 551, 1666
XmiI GTMKAC 3 cut(s) 2444, 2837, 2952
XmnI GAANNNNTTC 1 cut(s) 2287
XspI CTAG 2 cut(s) 777, 1731
ZrmI AGTACT 4 cut(s) 622, 646, 1255, 1624
Zsp2I ATGCAT 1 cut(s) 2813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.