pycom01g15820

structural constituent of nuclear pore

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0007827
Physical Location & Seq
Forward (+)
15568834 .. 15569538
705 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g15820.1

Sequence Viewer

Length: 705 bp
ATGGACCAACAATGCGGGAGCAGTATGGTGGCTGTGCCACATGCTGCAAGTCGTGAATCTGATGGTGGCGGGAAATTGGTGTCAATATCAGCAATGCCAGCATATATGGAAAAAAGTCACGAAGAAATCCGCTGGGAGGCTTCTGAAAAAGTGTTGTCGATATCAGCAATGCCAGGACATGAAGAAAAAAGTCACGAGCAAATCCGTTGGGAGTATTATCATCAATTGGGAGATAAGGGCACTTCTTCAGTTTTTAGACAAACCTCATCTCCATCGATCTCTAATCTGTCAAGCTTTGCTCCGGCTTCTACATATACAACTTCCACATTCAATCTACCTCCATTGATCTCTAATCCCTCAAGCTTTGATCCGGCTTCCACTAGTACAACTTTCAAATTCAATCCCACAGCTCCTTCAGCTGCACCGACAGTGCCAGATGACAGTACAAGCAGACAAATGGGTTTTAATGAAGCAGCTCCGCCTTCTGTTTCCATGCCTTTCTCATCTCTGCCAATTCAGAATAACTATGGACGGTTTCCTGCTACTCAAAGCCCTGCAGCTGTACAACCAGTACAACTAGTACCCGCTCCAAATCCATTCGGAACGCTCCCTCGAGTGCCTCAGATGTCAATCGGTTGCGGTGAAATGATTCAATATGGAATTTCGAGCATGCCTGTCGTAGACAACCGCTGCTGCGCTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000226 GO:0000972 GO:0000973 GO:0003674 GO:0003682 GO:0003712 GO:0003714 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005856 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006607 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007163 GO:0008104 GO:0008150 GO:0008152 GO:0008360 GO:0009266 GO:0009408 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010467 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0010648 GO:0012505 GO:0015031 GO:0015629 GO:0015833 GO:0015931 GO:0016020 GO:0016021 GO:0016043 GO:0016973 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0022603 GO:0022604 GO:0023051 GO:0023057 GO:0031224 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031503 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0031990 GO:0032991 GO:0033036 GO:0033365 GO:0033500 GO:0033554 GO:0034399 GO:0034504 GO:0034605 GO:0034613 GO:0042592 GO:0042593 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044446 GO:0044464 GO:0044613 GO:0044614 GO:0045184 GO:0045934 GO:0046626 GO:0046627 GO:0046907 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048878 GO:0050657 GO:0050658 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051028 GO:0051128 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051253 GO:0051276 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0061245 GO:0061246 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0071166 GO:0071214 GO:0071426 GO:0071427 GO:0071470 GO:0071472 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0071963 GO:0072594 GO:0080090 GO:0104004 GO:0140110 GO:1900076 GO:1900077 GO:1902679 GO:1903506 GO:1903507 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03013 ko05164 map03013 map05164
Pfam Domains
Protein Families
Nic96 Nucleoporin_FG Nup96 RRM_1 zf-CCCH

Protein Analysis

235

Amino Acids

25.06

Weight (kDa)

5.49

Isoelectric Point (pI)

72.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 587
AccI GTMKAC 1 cut(s) 681
AciI CCGC 7 cut(s) 15, 69, 130, 479, 585, 639, 688
AclWI GGATC 1 cut(s) 362
AcsI RAATTY 2 cut(s) 395, 660
AcuI CTGAAG 2 cut(s) 231, 399
AfaI GTAC 5 cut(s) 385, 445, 564, 573, 582
AfiI CCNNNNNNNGG 1 cut(s) 136
AgsI TTSAA 4 cut(s) 331, 394, 400, 653
AhlI ACTAGT 2 cut(s) 380, 577
AjnI CCWGG 1 cut(s) 172
AluBI AGCT 6 cut(s) 294, 363, 410, 419, 476, 560
AluI AGCT 6 cut(s) 294, 363, 410, 419, 476, 560
AlwI GGATC 1 cut(s) 362
Ama87I CYCGRG 1 cut(s) 612
ApeKI GCWGC 6 cut(s) 44, 419, 473, 557, 690, 693
ApoI RAATTY 2 cut(s) 395, 660
Asp700I GAANNNNTTC 1 cut(s) 648
AspLEI GCGC 1 cut(s) 698
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 653
AvaI CYCGRG 1 cut(s) 612
AvaII GGWCC 1 cut(s) 4
BaeGI GKGCMC 1 cut(s) 242
BauI CACGAG 1 cut(s) 194
BbvI GCAGC 6 cut(s) 31, 406, 485, 569, 677, 680
BccI CCATC 2 cut(s) 56, 280
BcgI CGANNNNNNTGC 2 cut(s) 658, 692
BciT130I CCWGG 1 cut(s) 174
BcuI ACTAGT 2 cut(s) 380, 577
BfaI CTAG 2 cut(s) 381, 578
BfmI CTRYAG 1 cut(s) 555
BisI GCNGC 6 cut(s) 45, 420, 474, 558, 691, 694
BlsI GCNGC 6 cut(s) 46, 421, 475, 559, 692, 695
Bme1390I CCNGG 1 cut(s) 174
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 1 cut(s) 612
BmgT120I GGNCC 1 cut(s) 4
BmrFI CCNGG 1 cut(s) 174
BpuEI CTTGAG 1 cut(s) 343
Bsa29I ATCGAT 1 cut(s) 275
BsaBI GATNNNNATC 1 cut(s) 629
BsaXI ACNNNNNCTCC 2 cut(s) 253, 283
Bsc4I CCNNNNNNNGG 1 cut(s) 136
Bse1I ACTGG 1 cut(s) 569
Bse3DI GCAATG 2 cut(s) 99, 174
Bse8I GATNNNNATC 1 cut(s) 629
BseBI CCWGG 1 cut(s) 174
BseCI ATCGAT 1 cut(s) 275
BseJI GATNNNNATC 1 cut(s) 629
BseLI CCNNNNNNNGG 1 cut(s) 136
BseMI GCAATG 2 cut(s) 99, 174
BseMII CTCAG 1 cut(s) 635
BseNI ACTGG 1 cut(s) 569
BseSI GKGCMC 1 cut(s) 242
BseXI GCAGC 6 cut(s) 31, 406, 485, 569, 677, 680
BseYI CCCAGC 1 cut(s) 132
BsgI GTGCAG 1 cut(s) 405
BshVI ATCGAT 1 cut(s) 275
BsiHKCI CYCGRG 1 cut(s) 612
BsiSI CCGG 2 cut(s) 302, 371
BslI CCNNNNNNNGG 1 cut(s) 136
BsoBI CYCGRG 1 cut(s) 612
Bsp1286I GDGCHC 1 cut(s) 242
Bsp1407I TGTACA 1 cut(s) 562
Bsp143I GATC 3 cut(s) 276, 345, 367
BspACI CCGC 7 cut(s) 15, 69, 130, 479, 585, 639, 688
BspCNI CTCAG 1 cut(s) 634
BspDI ATCGAT 1 cut(s) 275
BspMAI CTGCAG 1 cut(s) 559
BspPI GGATC 1 cut(s) 362
BsrBI CCGCTC 1 cut(s) 587
BsrDI GCAATG 2 cut(s) 99, 174
BsrGI TGTACA 1 cut(s) 562
BsrI ACTGG 1 cut(s) 569
BssMI GATC 3 cut(s) 276, 345, 367
BssSI CACGAG 1 cut(s) 194
Bst2BI CACGAG 1 cut(s) 194
Bst2UI CCWGG 1 cut(s) 174
Bst4CI ACNGT 3 cut(s) 430, 443, 534
BstAUI TGTACA 1 cut(s) 562
BstC8I GCNNGC 2 cut(s) 99, 671
BstDEI CTNAG 1 cut(s) 621
BstHHI GCGC 1 cut(s) 698
BstKTI GATC 3 cut(s) 279, 348, 370
BstMBI GATC 3 cut(s) 276, 345, 367
BstMWI GCNNNNNNNGC 2 cut(s) 98, 416
BstNI CCWGG 1 cut(s) 174
BstNSI RCATGY 2 cut(s) 44, 673
BstSCI CCNGG 1 cut(s) 172
BstSFI CTRYAG 1 cut(s) 555
BstSLI GKGCMC 1 cut(s) 242
BstV1I GCAGC 6 cut(s) 31, 406, 485, 569, 677, 680
Bsu15I ATCGAT 1 cut(s) 275
BsuTUI ATCGAT 1 cut(s) 275
BtsIMutI CAGTG 1 cut(s) 435
Cac8I GCNNGC 2 cut(s) 99, 671
CfoI GCGC 1 cut(s) 698
Cfr13I GGNCC 1 cut(s) 4
ClaI ATCGAT 1 cut(s) 275
Csp6I GTAC 5 cut(s) 384, 444, 563, 572, 581
CviAII CATG 4 cut(s) 41, 179, 493, 670
CviQI GTAC 5 cut(s) 384, 444, 563, 572, 581
DdeI CTNAG 1 cut(s) 621
DpnI GATC 3 cut(s) 278, 347, 369
DpnII GATC 3 cut(s) 276, 345, 367
EciI GGCGGA 1 cut(s) 468
Eco32I GATATC 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 2 cut(s) 231, 399
Eco88I CYCGRG 1 cut(s) 612
EcoRII CCWGG 1 cut(s) 172
EcoRV GATATC 1 cut(s) 162
FaeI CATG 4 cut(s) 44, 182, 496, 673
FatI CATG 4 cut(s) 40, 178, 492, 669
FauI CCCGC 3 cut(s) 8, 62, 592
FblI GTMKAC 1 cut(s) 681
Fnu4HI GCNGC 6 cut(s) 45, 420, 474, 558, 691, 694
Fsp4HI GCNGC 6 cut(s) 45, 420, 474, 558, 691, 694
FspBI CTAG 2 cut(s) 381, 578
GlaI GCGC 1 cut(s) 697
GluI GCNGC 6 cut(s) 45, 420, 474, 558, 691, 694
GsaI CCCAGC 1 cut(s) 136
HapII CCGG 2 cut(s) 302, 371
HhaI GCGC 1 cut(s) 698
Hin1II CATG 4 cut(s) 44, 182, 496, 673
Hin6I GCGC 1 cut(s) 696
HinP1I GCGC 1 cut(s) 696
HindIII AAGCTT 2 cut(s) 292, 361
HinfI GANTC 2 cut(s) 56, 649
HpaII CCGG 2 cut(s) 302, 371
HphI GGTGA 1 cut(s) 653
Hpy166II GTNNAC 1 cut(s) 682
Hpy188I TCNGA 5 cut(s) 61, 145, 519, 602, 624
Hpy188III TCNNGA 3 cut(s) 53, 119, 194
Hpy8I GTNNAC 1 cut(s) 682
HpyAV CCTTC 2 cut(s) 423, 492
HpyCH4III ACNGT 3 cut(s) 430, 443, 534
HpyCH4V TGCA 3 cut(s) 47, 422, 557
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 416
HpyF3I CTNAG 1 cut(s) 621
Hsp92II CATG 4 cut(s) 44, 182, 496, 673
HspAI GCGC 1 cut(s) 696
Kzo9I GATC 3 cut(s) 276, 345, 367
LmnI GCTCC 6 cut(s) 18, 304, 415, 481, 592, 612
Lsp1109I GCAGC 6 cut(s) 31, 406, 485, 569, 677, 680
MaeI CTAG 2 cut(s) 381, 578
MaeIII GTNAC 2 cut(s) 116, 191
MalI GATC 3 cut(s) 278, 347, 369
MbiI CCGCTC 1 cut(s) 587
MboI GATC 3 cut(s) 276, 345, 367
MboII GAAGA 3 cut(s) 134, 194, 237
MfeI CAATTG 1 cut(s) 224
MhlI GDGCHC 1 cut(s) 242
MluCI AATT 5 cut(s) 74, 224, 395, 513, 660
MnlI CCTC 6 cut(s) 130, 274, 348, 367, 621, 630
MroXI GAANNNNTTC 1 cut(s) 648
MseI TTAA 1 cut(s) 465
MspA1I CMGCKG 4 cut(s) 132, 419, 560, 690
MspI CCGG 2 cut(s) 302, 371
MspR9I CCNGG 1 cut(s) 174
MunI CAATTG 1 cut(s) 224
MvaI CCWGG 1 cut(s) 174
MwoI GCNNNNNNNGC 2 cut(s) 98, 416
NdeII GATC 3 cut(s) 276, 345, 367
NlaIII CATG 4 cut(s) 44, 182, 496, 673
NmuCI GTSAC 2 cut(s) 116, 191
NspI RCATGY 2 cut(s) 44, 673
PaeI GCATGC 1 cut(s) 673
PaeR7I CTCGAG 1 cut(s) 612
PdmI GAANNNNTTC 1 cut(s) 648
PfeI GAWTC 2 cut(s) 56, 649
PkrI GCNGC 6 cut(s) 46, 421, 475, 559, 692, 695
Psp6I CCWGG 1 cut(s) 172
PspFI CCCAGC 1 cut(s) 132
PspGI CCWGG 1 cut(s) 172
PspPI GGNCC 1 cut(s) 4
PspXI VCTCGAGB 1 cut(s) 612
PstI CTGCAG 1 cut(s) 559
PvuII CAGCTG 2 cut(s) 419, 560
RsaI GTAC 5 cut(s) 385, 445, 564, 573, 582
RsaNI GTAC 5 cut(s) 384, 444, 563, 572, 581
SaqAI TTAA 1 cut(s) 465
SatI GCNGC 6 cut(s) 45, 420, 474, 558, 691, 694
Sau3AI GATC 3 cut(s) 276, 345, 367
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 174
SduI GDGCHC 1 cut(s) 242
SetI ASST 8 cut(s) 266, 296, 340, 365, 412, 421, 478, 562
SfcI CTRYAG 1 cut(s) 555
Sfr274I CTCGAG 1 cut(s) 612
SinI GGWCC 1 cut(s) 4
SlaI CTCGAG 1 cut(s) 612
SmlI CTYRAG 2 cut(s) 358, 612
SmoI CTYRAG 2 cut(s) 358, 612
SpeI ACTAGT 2 cut(s) 380, 577
SphI GCATGC 1 cut(s) 673
Sse9I AATT 5 cut(s) 74, 224, 395, 513, 660
SsiI CCGC 7 cut(s) 15, 69, 130, 479, 585, 639, 688
SspMI CTAG 2 cut(s) 381, 578
StyD4I CCNGG 1 cut(s) 172
TaaI ACNGT 3 cut(s) 430, 443, 534
TaqI TCGA 4 cut(s) 158, 275, 613, 665
TasI AATT 5 cut(s) 74, 224, 395, 513, 660
TatI WGTACW 4 cut(s) 383, 443, 562, 571
TfiI GAWTC 2 cut(s) 56, 649
Tru1I TTAA 1 cut(s) 465
Tru9I TTAA 1 cut(s) 465
TscAI CASTG 1 cut(s) 435
TseFI GTSAC 2 cut(s) 116, 191
TseI GCWGC 6 cut(s) 44, 419, 473, 557, 690, 693
Tsp45I GTSAC 2 cut(s) 116, 191
TspDTI ATGAA 2 cut(s) 195, 483
TspGWI ACGGA 1 cut(s) 194
TspRI CASTG 1 cut(s) 435
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 2 cut(s) 395, 660
XceI RCATGY 2 cut(s) 44, 673
XhoI CTCGAG 1 cut(s) 612
XmiI GTMKAC 1 cut(s) 681
XmnI GAANNNNTTC 1 cut(s) 648
XspI CTAG 2 cut(s) 381, 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.