MD06G1126300.v1.1

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0007827
Physical Location & Seq
Forward (+)
26827660 .. 26834106
6447 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1126300.v1.1.491

Sequence Viewer

Length: 2973 bp
ATGTTCGGTTCTCCTAATCCTTTTGGGCAGTCATCTAGCAGCCCGTTTGGGTCTCAATCGGTATTTGGGCAGACCAGCAGCACAAATAACAATCCTTTTGCCCCTAAGCCTTTTGGTAGCACAACCCCATTTGGTGCGCAAACAGGGAGTAACATGTTTGGAGGAACTTCAACTGGTGTATTTGGTGGCGCAACTCAAGCTTCTTCATCTTTTCCTACCTCCACAACCTTCGGTCCTGCATCCTCACCAGCTTTTGGAAATACAACGCCTGCTTTTGGAGCAACTTCTAGTCCTTCACCATCACCTTTTGGTGGTTCATCTGGTTTTGGTCAGAAGCCTGTGTTTGGAGCATTTGGGTCCAATCCTGCTCAAACAAGTCCTTTTGGAAGTACAACTCAAGCATCACAGCCAGCATTTGGGAGCAGTATATTTGGTTCCTCCACGCCATTTGGTGGATCAAGTCAGCCAGCATTTGGTGCTACCACCACCCCAGCTTTTGGTGCTACAAGCACCCCAGCTTTTGGTACTACAAGCACCCCAGCCTTTGGTGCTACAAATAGTCCAGCCTTTGGTGCTGCCACCACCCCAAGTTTTGGTGCTACCACCACCCCAAGTTTTGGTGCTACAAGCACCCCAGCTTTTGGAGCTACAAGTAGCCCAGCCTTTGGTTCTACAACAAGTCCTACATTTGGAAGCACAGGAGCTGCATTTGGGGTGTCAAGTTCTCCCTTGTTTGGATCTGGGGGAGCATTTGGGGCTTCAAGCACTCCGGCTTTTGGTTCATCTAGCTCGACCTTTGGTACTTCAACCAATCCAGCTTTTGGTGCTTCAAGTGCTCCTGGTTTTGGTTCATCCAGTACTCCATCTTTCAGCTTTCCATCAACTCCTGCCTTTGGCCAATCAAGTTCTACATTTGCCGCTTCATCTCCTTTTGGAGCACAGAGTTCTCCATTTGTTGCTCAATCAACAACATTTGGGAACACTAGTGCCTTTGGGCAGTCAGCTTTTGGGGGCCAGCAACGCGGAGGCAGTAGAGTGGTTGCATATACTGCAACTCCTGAACCCGATGGTGGAACTGGGACTAGTGCTGCTGGGAAATTGGAGTCAATATCAGCAATGCCAGCATATAAAGAAAAAAGTCATGAGGAACTCCGCTGGGAGGATTATCAATTGGGGGATAAAGGTGGTCCAGCTCCTGCTGGTGGGAGTGGGTTTGGCATTACTACCTCACAGCCAAGCCCTTTGAATTCTGCACCGATATTTTCTCAAGCATCAAGTCCTTTTAATGCCACAACTTCATCCAATTTGTTTGCTCCAAAAACTTCATCCTTCACTAATACAGGCTTCACAGCGTCTACACCATTCAGCTCATCAAGTTTTGGGATTTTTACTTCAACCAGTCCTTTTACACCATCACAACCTTCTACAGTTTTCCCTCAAACCTCATCTCCGTCTCTCTTTAGTTCGTCAAGCTCTGCATTTTCGTTTTCTGCTCCGGCTGCGACAACAACTTCCACATTTAATTCAAATCCATTCAATCCCACACCTCCAGCTGCCCAGACAGGTGGTGCTTTTACCAGTCCATTTGGGCAGAATACAACCCCGTTTGCTCAGCCATTTAGTAACCCTTCTACTGGCTTTGGTTTGGGGATCCCCTCTGCTGCTGGGGCTACAAGCAGTCAAATGGGTTTTAGTCAACCAACTCCAACTTCATTTTCTATGCCTTTCTCATCTCAGCCAACTCAGAATAGTGGTTTTAACTTCAACAGTTTTAATCAAACTCAGCCAGGCAACACAAGTGGCTTGGGAGGAGGTTCAACAGGAATTCTTGGTCAGAATAACTATGGACAGTTGCCTGCAACTCAAAGCTCTGCAGCTGTACAACCAGTCCCTGCTAGAAATCCATTTGGAACGCTCCCTGCAATGCCACAAATGTCAATTGGTCGTGGTGGAACTGCACCATCAATTCAATATGGAATTTCGAGCATGCCTGTCGTAGACAAACCTGCACCTGTTAAAGTATCATATTTGTTGACCTCTCGACACCTGTCGCAGAGGCGGGTCAGGTTGCCTGCGAGAAAATATAATCCTAAGAATGACGATCCAAGGTTCCCTTTCTTTATTGACGATGAAGAAATAGACAGCACACCCAAGGCGGATGCCCTTTTCCTTCCCAGAGAAAACCCAAGAGTACTTGTCATTCGTCCAAAAGAACAGTGGCCTCAAAGGGTTGTTGCTGAGAAAGCATCCCCATTAAAGGATACTTCTACTCTGGTTCATGAGAATGAAACTCGAGAAGAAAATGGCTTTGTGAAAGAGTGGGCGGATCATGCCAAAGTCAACCAGAAACCGAATGGAGTTCATGATGATCATTCTGTTCAGAAAGGGGACTCTTATATGACACTGAGTGGGCATAGAGCCGGTGAGGCTGCTATTGCGTATGAGCATGGCGCTGACATTGAGGCACTAATGCCAAAGCTCCGTCGTACCGACTACTATACAGAACCTCGAATCCAAGAATTGGCAGCTAAGGAAAGGGCAGAACCAGGGTTCTGCTGTTGTGTCAAGGACTTTGTGGTTGGACGAGTTGGGTATGGTAGCATCAAGTTCTTTGGGGAGACAGATGTGCGATGCCTTGATCTTGAGGCTCTCGTGCAGTTCAACAACCGGGAGGTGATAGTGTATATGGATGACAGTAAGAAACCTCCTGTCGGGCAAGGCCTCAACAAACCTGCTGAGGTTACACTTCTCAACATTACATGCACTGACAAAAAAACAGGGCGTCGGTTCACAGAAGGGCCGAAGACAGAGAGATACAAGCAGATGCTGAAGAAGAAGGCAGAGGATCAAGGAGCCGAGTTTGTTTCTTATGACGCCTTGAAAGGCGAGTGGAAGTTCAGGGTAAAGCACTTCAGTAAGTACGAGTTGGGAGAGGAAGACAACTGGGATACCGATGCTGCCCAAGATTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000972 GO:0000973 GO:0003674 GO:0003676 GO:0003682 GO:0003712 GO:0003713 GO:0003723 GO:0003729 GO:0005048 GO:0005198 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008139 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016032 GO:0016043 GO:0016234 GO:0016604 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0022607 GO:0031080 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033120 GO:0033218 GO:0033365 GO:0034397 GO:0034398 GO:0034399 GO:0034504 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0042277 GO:0042405 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044614 GO:0044615 GO:0045184 GO:0045935 GO:0046483 GO:0046907 GO:0046931 GO:0048024 GO:0048026 GO:0048518 GO:0048522 GO:0048583 GO:0050000 GO:0050657 GO:0050658 GO:0050684 GO:0050685 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051254 GO:0051276 GO:0051292 GO:0051640 GO:0051641 GO:0051649 GO:0051704 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1902446 GO:1902680 GO:1903311 GO:1903313 GO:1903506 GO:1903508 GO:1990841 GO:1990904 GO:2000030 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03013 ko05164 map03013 map05164
Pfam Domains
Protein Families
Nucleoporin2

Protein Analysis

991

Amino Acids

102.54

Weight (kDa)

7.6

Isoelectric Point (pI)

55.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nup98_GLEBS PF21240 368 - 389 2e-06 Nup98, Gle2-binding sequence
Nucleoporin2 PF04096 830 - 976 8.7e-44 Nup98-96 autopeptidase S59
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 138
Acc36I ACCTGC 2 cut(s) 2014, 2740
AccI GTMKAC 2 cut(s) 1355, 1998
AccII CGCG 1 cut(s) 1023
AciI CCGC 6 cut(s) 918, 1023, 1153, 2059, 2156, 2324
AclWI GGATC 7 cut(s) 463, 745, 1645, 1658, 2096, 2334, 2853
AcoI YGGCCR 1 cut(s) 895
AcsI RAATTY 3 cut(s) 1246, 1824, 1977
AcuI CTGAAG 2 cut(s) 2849, 2896
AcyI GRCGYC 2 cut(s) 2782, 2874
AdeI CACNNNGTG 1 cut(s) 2408
AfaI GTAC 8 cut(s) 391, 526, 802, 859, 1881, 2193, 2488, 2921
AflIII ACRYGT 1 cut(s) 153
AhlI ACTAGT 2 cut(s) 983, 1082
AjnI CCWGG 3 cut(s) 838, 1786, 2545
AjuI GAANNNNNNNTTGG 4 cut(s) 1693, 1699, 1725, 1731
AloI GAACNNNNNNTCC 2 cut(s) 2496, 2528
Alw21I GWGCWC 2 cut(s) 838, 940
Alw26I GTCTC 3 cut(s) 57, 1458, 2612
AlwI GGATC 7 cut(s) 463, 745, 1645, 1658, 2096, 2334, 2853
AlwNI CAGNNNCTG 4 cut(s) 704, 1196, 1892, 2827
Ama87I CYCGRG 1 cut(s) 2292
AoxI GGCC 5 cut(s) 895, 1012, 2219, 2719, 2798
ApoI RAATTY 3 cut(s) 1246, 1824, 1977
AspLEI GCGC 3 cut(s) 139, 191, 2453
AspS9I GGNCC 5 cut(s) 233, 357, 1012, 1187, 2798
AsuC2I CCSGG 1 cut(s) 2669
AsuHPI GGTGA 5 cut(s) 237, 288, 294, 2435, 2686
AvaI CYCGRG 1 cut(s) 2292
AvaII GGWCC 3 cut(s) 233, 357, 1187
BalI TGGCCA 1 cut(s) 897
BamHI GGATCC 1 cut(s) 1650
BauI CACGAG 1 cut(s) 2651
BbsI GAAGAC 2 cut(s) 2810, 2943
Bbv12I GWGCWC 2 cut(s) 838, 940
BbvCI CCTCAGC 1 cut(s) 2736
BccI CCATC 6 cut(s) 307, 871, 886, 1061, 1420, 1969
BcgI CGANNNNNNTGC 2 cut(s) 1975, 2009
BciT130I CCWGG 3 cut(s) 840, 1788, 2547
BciVI GTATCC 2 cut(s) 2254, 2941
BclI TGATCA 1 cut(s) 2368
BcnI CCSGG 1 cut(s) 2669
BcoDI GTCTC 3 cut(s) 57, 1458, 2612
BcuI ACTAGT 2 cut(s) 983, 1082
BfaI CTAG 6 cut(s) 36, 288, 786, 984, 1083, 1896
BfmI CTRYAG 2 cut(s) 1425, 1872
BfoI RGCGCY 1 cut(s) 2454
BfuAI ACCTGC 2 cut(s) 2014, 2740
BfuI GTATCC 2 cut(s) 2254, 2941
BglI GCCNNNNNGGC 1 cut(s) 2426
BlpI GCTNAGC 1 cut(s) 1611
BmcAI AGTACT 2 cut(s) 859, 2193
Bme1390I CCNGG 4 cut(s) 840, 1788, 2547, 2669
Bme18I GGWCC 3 cut(s) 233, 357, 1187
BmeT110I CYCGRG 1 cut(s) 2292
BmgT120I GGNCC 5 cut(s) 233, 357, 1012, 1187, 2798
BmiI GGNNCC 6 cut(s) 358, 436, 1013, 1652, 2111, 2854
BmrFI CCNGG 4 cut(s) 840, 1788, 2547, 2669
BmrI ACTGGG 2 cut(s) 1086, 2953
BmsI GCATC 9 cut(s) 248, 410, 1280, 2149, 2255, 2610, 2621, 2814, 2944
BmuI ACTGGG 2 cut(s) 1086, 2953
BoxI GACNNNNGTC 1 cut(s) 2047
BpiI GAAGAC 2 cut(s) 2810, 2943
BpmI CTGGAG 1 cut(s) 1533
Bpu10I CCTNAGC 3 cut(s) 105, 2529, 2736
Bpu1102I GCTNAGC 1 cut(s) 1611
BpuEI CTTGAG 4 cut(s) 180, 381, 1251, 2663
BpuMI CCSGG 1 cut(s) 2669
BsaHI GRCGYC 2 cut(s) 2782, 2874
BsaI GGTCTC 1 cut(s) 57
BsaJI CCNNGG 3 cut(s) 2105, 2151, 2546
BsaXI ACNNNNNCTCC 4 cut(s) 1039, 1069, 1432, 1462
Bse118I RCCGGY 1 cut(s) 2420
Bse1I ACTGG 8 cut(s) 178, 855, 1081, 1398, 1578, 1639, 1886, 2948
Bse3DI GCAATG 2 cut(s) 1122, 1929
BseBI CCWGG 3 cut(s) 840, 1788, 2547
BseDI CCNNGG 3 cut(s) 2105, 2151, 2546
BseGI GGATG 7 cut(s) 239, 851, 1298, 1325, 2164, 2246, 2695
BseMI GCAATG 2 cut(s) 1122, 1929
BseMII CTCAG 7 cut(s) 1625, 1748, 1757, 1796, 2229, 2396, 2727
BseNI ACTGG 8 cut(s) 178, 855, 1081, 1398, 1578, 1639, 1886, 2948
BseRI GAGGAG 1 cut(s) 1824
BseYI CCCAGC 8 cut(s) 490, 514, 538, 634, 658, 1091, 1155, 1664
BsgI GTGCAG 4 cut(s) 1236, 1941, 1992, 2675
Bsh1236I CGCG 1 cut(s) 1023
BshFI GGCC 5 cut(s) 897, 1014, 2221, 2721, 2800
BsiHKAI GWGCWC 2 cut(s) 838, 940
BsiHKCI CYCGRG 1 cut(s) 2292
BsiSI CCGG 4 cut(s) 770, 1496, 2421, 2668
BslFI GGGAC 3 cut(s) 1093, 1874, 2402
BsmAI GTCTC 3 cut(s) 57, 1458, 2612
BsmBI CGTCTC 1 cut(s) 1458
BsmFI GGGAC 3 cut(s) 1093, 1874, 2402
BsnI GGCC 5 cut(s) 897, 1014, 2221, 2721, 2800
Bso31I GGTCTC 1 cut(s) 57
BsoBI CYCGRG 1 cut(s) 2292
Bsp1286I GDGCHC 2 cut(s) 838, 940
Bsp1407I TGTACA 1 cut(s) 1879
Bsp143I GATC 8 cut(s) 455, 737, 1650, 2101, 2326, 2368, 2638, 2845
Bsp1720I GCTNAGC 1 cut(s) 1611
BspACI CCGC 6 cut(s) 918, 1023, 1153, 2059, 2156, 2324
BspANI GGCC 5 cut(s) 897, 1014, 2221, 2721, 2800
BspCNI CTCAG 7 cut(s) 1624, 1747, 1756, 1795, 2230, 2397, 2728
BspFNI CGCG 1 cut(s) 1023
BspHI TCATGA 3 cut(s) 1141, 2278, 2362
BspLI GGNNCC 6 cut(s) 358, 436, 1013, 1652, 2111, 2854
BspMAI CTGCAG 1 cut(s) 1876
BspMI ACCTGC 2 cut(s) 2014, 2740
BspPI GGATC 7 cut(s) 463, 745, 1645, 1658, 2096, 2334, 2853
BspTNI GGTCTC 1 cut(s) 57
BsrDI GCAATG 2 cut(s) 1122, 1929
BsrFI RCCGGY 1 cut(s) 2420
BsrGI TGTACA 1 cut(s) 1879
BsrI ACTGG 8 cut(s) 178, 855, 1081, 1398, 1578, 1639, 1886, 2948
BssAI RCCGGY 1 cut(s) 2420
BssECI CCNNGG 3 cut(s) 2105, 2151, 2546
BssMI GATC 8 cut(s) 455, 737, 1650, 2101, 2326, 2368, 2638, 2845
BssNI GRCGYC 2 cut(s) 2782, 2874
BssSI CACGAG 1 cut(s) 2651
BssT1I CCWWGG 2 cut(s) 2105, 2151
Bst2BI CACGAG 1 cut(s) 2651
Bst2UI CCWGG 3 cut(s) 840, 1788, 2547
Bst4CI ACNGT 5 cut(s) 1429, 1769, 1851, 2217, 2696
BstACI GRCGYC 2 cut(s) 2782, 2874
BstAPI GCANNNNNTGC 2 cut(s) 476, 1049
BstAUI TGTACA 1 cut(s) 1879
BstC8I GCNNGC 8 cut(s) 270, 411, 468, 1016, 1122, 1857, 1988, 2073
BstF5I GGATG 7 cut(s) 239, 851, 1298, 1325, 2164, 2246, 2695
BstFNI CGCG 1 cut(s) 1023
BstH2I RGCGCY 1 cut(s) 2454
BstHHI GCGC 3 cut(s) 139, 191, 2453
BstKTI GATC 8 cut(s) 458, 740, 1653, 2104, 2329, 2371, 2641, 2848
BstMAI GTCTC 3 cut(s) 57, 1458, 2612
BstMBI GATC 8 cut(s) 455, 737, 1650, 2101, 2326, 2368, 2638, 2845
BstNI CCWGG 3 cut(s) 840, 1788, 2547
BstNSI RCATGY 3 cut(s) 157, 1990, 2763
BstPAI GACNNNNGTC 1 cut(s) 2047
BstSCI CCNGG 4 cut(s) 838, 1786, 2545, 2667
BstSFI CTRYAG 2 cut(s) 1425, 1872
BstUI CGCG 1 cut(s) 1023
BstV2I GAAGAC 2 cut(s) 2810, 2943
BstX2I RGATCY 2 cut(s) 737, 1650
BstXI CCANNNNNNTGG 1 cut(s) 1565
BstYI RGATCY 2 cut(s) 737, 1650
BsuI GTATCC 2 cut(s) 2254, 2941
BsuRI GGCC 5 cut(s) 897, 1014, 2221, 2721, 2800
BtgZI GCGATG 1 cut(s) 2644
BtsCI GGATG 7 cut(s) 239, 851, 1298, 1325, 2164, 2246, 2695
BtsIMutI CAGTG 3 cut(s) 2222, 2402, 2763
BveI ACCTGC 2 cut(s) 2014, 2740
Cac8I GCNNGC 8 cut(s) 270, 411, 468, 1016, 1122, 1857, 1988, 2073
CaiI CAGNNNCTG 4 cut(s) 704, 1196, 1892, 2827
CciI TCATGA 3 cut(s) 1141, 2278, 2362
CfoI GCGC 3 cut(s) 139, 191, 2453
Cfr10I RCCGGY 1 cut(s) 2420
Cfr13I GGNCC 5 cut(s) 233, 357, 1012, 1187, 2798
CseI GACGC 3 cut(s) 1341, 2771, 2882
Csp6I GTAC 8 cut(s) 390, 525, 801, 858, 1880, 2192, 2487, 2920
CspCI CAANNNNNGTGG 4 cut(s) 430, 465, 1780, 1815
CviAII CATG 8 cut(s) 154, 1142, 1987, 2279, 2330, 2363, 2447, 2760
CviQI GTAC 8 cut(s) 390, 525, 801, 858, 1880, 2192, 2487, 2920
DpnI GATC 8 cut(s) 457, 739, 1652, 2103, 2328, 2370, 2640, 2847
DpnII GATC 8 cut(s) 455, 737, 1650, 2101, 2326, 2368, 2638, 2845
DraIII CACNNNGTG 1 cut(s) 2408
EaeI YGGCCR 1 cut(s) 895
EciI GGCGGA 2 cut(s) 2171, 2339
Eco130I CCWWGG 2 cut(s) 2105, 2151
Eco147I AGGCCT 1 cut(s) 2721
Eco31I GGTCTC 1 cut(s) 57
Eco47I GGWCC 3 cut(s) 233, 357, 1187
Eco57I CTGAAG 2 cut(s) 2849, 2896
Eco88I CYCGRG 1 cut(s) 2292
EcoRI GAATTC 2 cut(s) 1246, 1824
EcoRII CCWGG 3 cut(s) 838, 1786, 2545
EcoT14I CCWWGG 2 cut(s) 2105, 2151
ErhI CCWWGG 2 cut(s) 2105, 2151
Esp3I CGTCTC 1 cut(s) 1458
FaeI CATG 8 cut(s) 157, 1145, 1990, 2282, 2333, 2366, 2450, 2763
FalI AAGNNNNNCTT 2 cut(s) 2098, 2130
FaqI GGGAC 3 cut(s) 1093, 1874, 2402
FatI CATG 8 cut(s) 153, 1141, 1986, 2278, 2329, 2362, 2446, 2759
FauI CCCGC 1 cut(s) 2052
FbaI TGATCA 1 cut(s) 2368
FblI GTMKAC 2 cut(s) 1355, 1998
FokI GGATG 7 cut(s) 226, 838, 1285, 1312, 2171, 2233, 2702
FspBI CTAG 6 cut(s) 36, 288, 786, 984, 1083, 1896
FspI TGCGCA 1 cut(s) 138
GlaI GCGC 3 cut(s) 138, 190, 2452
GsaI CCCAGC 8 cut(s) 494, 518, 542, 638, 662, 1095, 1159, 1668
GsuI CTGGAG 1 cut(s) 1533
HaeII RGCGCY 1 cut(s) 2454
HaeIII GGCC 5 cut(s) 897, 1014, 2221, 2721, 2800
HapII CCGG 4 cut(s) 770, 1496, 2421, 2668
HgaI GACGC 3 cut(s) 1341, 2771, 2882
HhaI GCGC 3 cut(s) 139, 191, 2453
Hin1I GRCGYC 2 cut(s) 2782, 2874
Hin1II CATG 8 cut(s) 157, 1145, 1990, 2282, 2333, 2366, 2450, 2763
Hin6I GCGC 3 cut(s) 137, 189, 2451
HinP1I GCGC 3 cut(s) 137, 189, 2451
HincII GTYRAC 3 cut(s) 1697, 2034, 2341
HindII GTYRAC 3 cut(s) 1697, 2034, 2341
HindIII AAGCTT 1 cut(s) 198
HinfI GANTC 3 cut(s) 1103, 2390, 2511
HpaII CCGG 4 cut(s) 770, 1496, 2421, 2668
HphI GGTGA 5 cut(s) 237, 288, 294, 2435, 2686
Hpy166II GTNNAC 6 cut(s) 1356, 1697, 1999, 2034, 2341, 2790
Hpy188I TCNGA 4 cut(s) 333, 1746, 1836, 2382
Hpy188III TCNNGA 7 cut(s) 1058, 1142, 2040, 2279, 2294, 2363, 2642
Hpy8I GTNNAC 6 cut(s) 1356, 1697, 1999, 2034, 2341, 2790
Hpy99I CGWCG 2 cut(s) 2487, 2787
HpyAV CCTTC 8 cut(s) 238, 303, 1339, 1431, 1638, 2180, 2789, 2830
HpyCH4III ACNGT 5 cut(s) 1429, 1769, 1851, 2217, 2696
Hsp92I GRCGYC 2 cut(s) 2782, 2874
Hsp92II CATG 8 cut(s) 157, 1145, 1990, 2282, 2333, 2366, 2450, 2763
HspAI GCGC 3 cut(s) 137, 189, 2451
Ksp22I TGATCA 1 cut(s) 2368
Kzo9I GATC 8 cut(s) 455, 737, 1650, 2101, 2326, 2368, 2638, 2845
LweI GCATC 9 cut(s) 248, 410, 1280, 2149, 2255, 2610, 2621, 2814, 2944
MaeI CTAG 6 cut(s) 36, 288, 786, 984, 1083, 1896
MaeIII GTNAC 3 cut(s) 149, 1622, 2740
MalI GATC 8 cut(s) 457, 739, 1652, 2103, 2328, 2370, 2640, 2847
MboI GATC 8 cut(s) 455, 737, 1650, 2101, 2326, 2368, 2638, 2845
MboII GAAGA 7 cut(s) 195, 2144, 2309, 2815, 2842, 2845, 2948
MfeI CAATTG 2 cut(s) 1169, 1938
MflI RGATCY 2 cut(s) 737, 1650
MhlI GDGCHC 2 cut(s) 838, 940
MlsI TGGCCA 1 cut(s) 897
MluNI TGGCCA 1 cut(s) 897
MlyI GAGTC 2 cut(s) 1112, 2384
MmeI TCCRAC 2 cut(s) 1730, 2560
Mox20I TGGCCA 1 cut(s) 897
MscI TGGCCA 1 cut(s) 897
MseI TTAA 6 cut(s) 1284, 1521, 1758, 1773, 2016, 2255
MslI CAYNNNNRTG 1 cut(s) 2283
Msp20I TGGCCA 1 cut(s) 897
MspA1I CMGCKG 3 cut(s) 1155, 1553, 1877
MspI CCGG 4 cut(s) 770, 1496, 2421, 2668
MspR9I CCNGG 4 cut(s) 840, 1788, 2547, 2669
MunI CAATTG 2 cut(s) 1169, 1938
MvaI CCWGG 3 cut(s) 840, 1788, 2547
MvnI CGCG 1 cut(s) 1023
NciI CCSGG 1 cut(s) 2669
NdeII GATC 8 cut(s) 455, 737, 1650, 2101, 2326, 2368, 2638, 2845
NlaIII CATG 8 cut(s) 157, 1145, 1990, 2282, 2333, 2366, 2450, 2763
NlaIV GGNNCC 6 cut(s) 358, 436, 1013, 1652, 2111, 2854
NmeAIII GCCGAG 1 cut(s) 2881
NsbI TGCGCA 1 cut(s) 138
NspI RCATGY 3 cut(s) 157, 1990, 2763
PaeI GCATGC 1 cut(s) 1990
PaeR7I CTCGAG 1 cut(s) 2292
PagI TCATGA 3 cut(s) 1141, 2278, 2362
PceI AGGCCT 1 cut(s) 2721
PciI ACATGT 1 cut(s) 153
PfeI GAWTC 1 cut(s) 2511
PleI GAGTC 2 cut(s) 1111, 2384
PpsI GAGTC 2 cut(s) 1111, 2384
PscI ACATGT 1 cut(s) 153
PshAI GACNNNNGTC 1 cut(s) 2047
Psp6I CCWGG 3 cut(s) 838, 1786, 2545
PspFI CCCAGC 8 cut(s) 490, 514, 538, 634, 658, 1091, 1155, 1664
PspGI CCWGG 3 cut(s) 838, 1786, 2545
PspN4I GGNNCC 6 cut(s) 358, 436, 1013, 1652, 2111, 2854
PspPI GGNCC 5 cut(s) 233, 357, 1012, 1187, 2798
PsrI GAACNNNNNNTAC 2 cut(s) 418, 450
PstI CTGCAG 1 cut(s) 1876
PstNI CAGNNNCTG 4 cut(s) 704, 1196, 1892, 2827
PsuI RGATCY 2 cut(s) 737, 1650
PvuII CAGCTG 2 cut(s) 1553, 1877
RsaI GTAC 8 cut(s) 391, 526, 802, 859, 1881, 2193, 2488, 2921
RsaNI GTAC 8 cut(s) 390, 525, 801, 858, 1880, 2192, 2487, 2920
RseI CAYNNNNRTG 1 cut(s) 2283
SaqAI TTAA 6 cut(s) 1284, 1521, 1758, 1773, 2016, 2255
Sau3AI GATC 8 cut(s) 455, 737, 1650, 2101, 2326, 2368, 2638, 2845
Sau96I GGNCC 5 cut(s) 233, 357, 1012, 1187, 2798
ScaI AGTACT 2 cut(s) 859, 2193
SchI GAGTC 2 cut(s) 1112, 2384
ScrFI CCNGG 4 cut(s) 840, 1788, 2547, 2669
SduI GDGCHC 2 cut(s) 838, 940
SfaNI GCATC 9 cut(s) 248, 410, 1280, 2149, 2255, 2610, 2621, 2814, 2944
SfcI CTRYAG 2 cut(s) 1425, 1872
Sfr274I CTCGAG 1 cut(s) 2292
SinI GGWCC 3 cut(s) 233, 357, 1187
SlaI CTCGAG 1 cut(s) 2292
SmiMI CAYNNNNRTG 1 cut(s) 2283
SmlI CTYRAG 5 cut(s) 195, 396, 1266, 2292, 2642
SmoI CTYRAG 5 cut(s) 195, 396, 1266, 2292, 2642
SpeI ACTAGT 2 cut(s) 983, 1082
SphI GCATGC 1 cut(s) 1990
SseBI AGGCCT 1 cut(s) 2721
SsiI CCGC 6 cut(s) 918, 1023, 1153, 2059, 2156, 2324
SspMI CTAG 6 cut(s) 36, 288, 786, 984, 1083, 1896
StuI AGGCCT 1 cut(s) 2721
StyD4I CCNGG 4 cut(s) 838, 1786, 2545, 2667
StyI CCWWGG 2 cut(s) 2105, 2151
TaaI ACNGT 5 cut(s) 1429, 1769, 1851, 2217, 2696
TaqI TCGA 5 cut(s) 791, 1982, 2041, 2293, 2509
TaqII GACCGA 1 cut(s) 221
TatI WGTACW 4 cut(s) 389, 857, 1879, 2191
TauI GCSGC 1 cut(s) 920
TfiI GAWTC 1 cut(s) 2511
Tru1I TTAA 6 cut(s) 1284, 1521, 1758, 1773, 2016, 2255
Tru9I TTAA 6 cut(s) 1284, 1521, 1758, 1773, 2016, 2255
TscAI CASTG 3 cut(s) 2222, 2409, 2770
TspGWI ACGGA 2 cut(s) 1440, 2471
TspRI CASTG 3 cut(s) 2222, 2409, 2770
VpaK11BI GGWCC 3 cut(s) 233, 357, 1187
XapI RAATTY 3 cut(s) 1246, 1824, 1977
XceI RCATGY 3 cut(s) 157, 1990, 2763
XcmI CCANNNNNNNNNTGG 2 cut(s) 2214, 2351
XhoI CTCGAG 1 cut(s) 2292
XmiI GTMKAC 2 cut(s) 1355, 1998
XspI CTAG 6 cut(s) 36, 288, 786, 984, 1083, 1896
ZrmI AGTACT 2 cut(s) 859, 2193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.