Rmu_ssc0000422.1_g000011

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000422.1
OG0007827
Physical Location & Seq
Forward (+)
36921 .. 44648
7728 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000422.1_g000011.1.cds

Sequence Viewer

Length: 3198 bp
atgattgggtcttctgctgatccttcggctgcaagaatgatggtcaatggcgaggacgatgctgctgatctcttgtgtttcctttatgagactcccaaacccttccttcccccttcttcgatctcacaccctccgataagctcagatcgcacgccgccggccgctcccgtacttcgccgctccgtctccgctttcaggccgccggccgctcccgtacttcgccgctccgtctccgctttcagcccatttgggtcccagtcggtgtttgggcaaagcagcaacacaagtaacaatccttttgctccccagccctttggtagcaccactccatttggtgcccagacagggagttccctatttgggggaacttcaactggcgtatttggtcaaacccaatcctcaccttttggtgcttcatcctcaccagctttcggacagcagagttctccatttggagcatcttctactccagcatttggtgcaccatcatctactcaaacaagtccatttggtggagcatttgggtcgagtcctgctcaaacaagtccatttggaagcacagctcaaccatcacaaccagcatttggaagcaatatgtttggtaccacctctacagcatttggcgcaagtcagcctgcatttggcactaatactgccccagcctttggttcaacgaatgccacaggctttggtggccagagcacccctggttttggtggccaaggcactccagcctttggggccacaagcgcttcaccttttggtagtacaagtactccggcgtttggtgctccaagtactcctacctttggctcaacaccaagtcctacatttggaagcacaggatctgcatttgggacaacaagttccaacttgtttggatcagggggagcatttggggcttcaaccaccccagcttttggtcaatctagctcagcttttggtactacaacaagtgctcctgcttttggtcaatcaagttcaggttttggcttttcaacaagtgctcctgcatttggccaatcaagttcaacctttggtagcacccaatttgcggcttcatctcctttcggagctcagagttcgccatctcctttcggagggcagagttcgccatttggggctcagtcaacaacaccaacacttggaaacactgcctttggacagccagcttttgggggccaacggggtggaagtagagtggctgcttacacaggcacatctgaaccagatagtaatggaatggggaaattggagtcaatatcagcaatgccagcctataaagaaaaaagtcacgaggaattgagatgggaggattaccaattaggggataagggtggaccatctcctgctggtgcgggtagctttggtgtatcaactgttcagacaagtactttgaatcctaatcctgcaccatcgttttctcaaacatcttcaagtccttttaatacctcaacctcatctggtttatttgcccaaaaaccctcatcctttccttctactggttttggtgttacttcatcttcaccatttagttcaacttcaccgtttagttcttcatcaactcaaaccaatttttttacacctgcatcatctgcgtcaccatttggccaaacgtcgtctccagctatttttagttcaccatcttccttttcattctctaccccagctacatcatccactccctcatttaattttcccactccatcaaacccacagacacagtttggtcaaacaggcactacctcctttgggctgaatccatctacctttggttcaaacttgttcaatagtacttccagtttgcagagcagttcattgggcactaccagcaaccaactgggtcttactcaagcagctcctgcttttcctactttccagacatctcagcctcttcagtctagtctttttggcttcagcaacaccaatgccttcaacaacaccaacacctttaatcaaccccagccaggcaacacaggtggttttggtggtttagcaggcatttctggtcagaacaactttggacaatcgtctgtcactcaaggctctgcagctgtacaacaaccagtacctgctacaaatccatttggaacgctccccgcgatgccgcaaatgtcaattggtcgtgggggaactgcaccatcaattcaatatggaatttcaagcatgcctgttgcggataaacctgcgcccgttagggtaacatccatcctgactcctcgacacctgtcacaacgccggatcagattacctgcaagaaaatataatcctaagaatgataacccaaaggctttttttagtgatgatgaagaaacaccctctacacccaagggggatgttgttttccatcccagggaaaacccaagagcacttgtcattcgtccccaggaacagtggcctctaagagcgagtgctgagaaagcaacagcactgaagaatgcccatgagaatggaaaaatttcgggagcagcactcttcgggggatccaactctgaggataaagacgaaccagaaactctgcaaggaaatggtgctgtcaaggagcatttaaatcatgtcaaggctaatcagaaacctaatggagtacatgatgatcactctattcagaaaggggactcgtatacaacactaagtgggcacagagctggtgaggctgcaattgtgtatgagcatggtgctgacattgaggcacaaatgccgaagctccgacgctctgattactacacagagccccgaatccaagaactggcggcaaaggaaagggcagagccagggttctgctgtcgtgtgaaggactttgtggttgggcgacatggttgtggtagcattaagttcttgggtgagacagatgtaaggcgccttgatcttgaggctctggtgcagttcaataataaggaggtaatcgtgtaccgtgatgagaacaagaagcctcctgtcgggcaagggcttaataaacctgctgaggttacacttctcaatattaaatgcattgagaagaagactgggcttcagtatacagaaggaccaaaagttgagaaatacaaggagatgctgaagaggaaggccgaggaacaaggtgccaagtttgtctcctttgacccaaagaaggaagagtggacgttcatggtcgaccacttcagtgagtacaagttgagagatgaagacgactgggatgtggatgctgcccaagattgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000972 GO:0000973 GO:0003674 GO:0003676 GO:0003682 GO:0003712 GO:0003713 GO:0003723 GO:0003729 GO:0005048 GO:0005198 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008139 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016032 GO:0016043 GO:0016234 GO:0016604 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0022607 GO:0031080 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033120 GO:0033218 GO:0033365 GO:0034397 GO:0034398 GO:0034399 GO:0034504 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0042277 GO:0042405 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044614 GO:0044615 GO:0045184 GO:0045935 GO:0046483 GO:0046907 GO:0046931 GO:0048024 GO:0048026 GO:0048518 GO:0048522 GO:0048583 GO:0050000 GO:0050657 GO:0050658 GO:0050684 GO:0050685 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051254 GO:0051276 GO:0051292 GO:0051640 GO:0051641 GO:0051649 GO:0051704 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1902446 GO:1902680 GO:1903311 GO:1903313 GO:1903506 GO:1903508 GO:1990841 GO:1990904 GO:2000030 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03013 ko05164 map03013 map05164
Pfam Domains
Protein Families
Nucleoporin2

Protein Analysis

1065

Amino Acids

110.5

Weight (kDa)

7.22

Isoelectric Point (pI)

59.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1594
Acc36I ACCTGC 5 cut(s) 1594, 2080, 2194, 2260, 2965
Acc65I GGTACC 1 cut(s) 602
AccB1I GGYRCC 4 cut(s) 335, 602, 2856, 3077
AccB7I CCANNNNNTGG 9 cut(s) 476, 512, 584, 665, 737, 920, 1145, 1175, 2746
AccBSI CCGCTC 4 cut(s) 164, 180, 209, 225
AccI GTMKAC 3 cut(s) 2621, 3014, 3129
AccII CGCG 1 cut(s) 2102
AclWI GGATC 6 cut(s) 14, 853, 889, 2249, 2478, 2491
AcoI YGGCCR 6 cut(s) 159, 204, 694, 718, 1018, 1609
AcsI RAATTY 2 cut(s) 2157, 2457
AcuI CTGAAG 6 cut(s) 1880, 1900, 2453, 2993, 3074, 3121
AcyI GRCGYC 1 cut(s) 2857
AdeI CACNNNGTG 1 cut(s) 2633
AfeI AGCGCT 1 cut(s) 751
AjnI CCWGG 5 cut(s) 706, 1966, 2351, 2385, 2770
AleI CACNNNNGTG 1 cut(s) 3138
AloI GAACNNNNNNTCC 2 cut(s) 850, 882
Alw21I GWGCWC 7 cut(s) 484, 704, 793, 961, 1009, 1078, 2371
Alw26I GTCTC 6 cut(s) 83, 190, 235, 1626, 2837, 3094
Alw44I GTGCAC 1 cut(s) 480
AlwI GGATC 6 cut(s) 14, 853, 889, 2249, 2478, 2491
AlwNI CAGNNNCTG 3 cut(s) 848, 1862, 2072
Aor51HI AGCGCT 1 cut(s) 751
ApaLI GTGCAC 1 cut(s) 480
ApeKI GCWGC 9 cut(s) 29, 62, 276, 1205, 1856, 2051, 2468, 2654, 3182
ApoI RAATTY 2 cut(s) 2157, 2457
ArsI GACNNNNNNTTYG 2 cut(s) 1378, 1410
Asp700I GAANNNNTTC 1 cut(s) 2458
Asp718I GGTACC 1 cut(s) 602
AspLEI GCGC 4 cut(s) 626, 752, 2191, 2859
AspS9I GGNCC 5 cut(s) 252, 741, 1180, 1340, 3023
AsuHPI GGTGA 9 cut(s) 393, 414, 747, 1518, 1536, 1593, 1632, 2660, 2852
AvaII GGWCC 3 cut(s) 252, 1340, 3023
BaeGI GKGCMC 4 cut(s) 340, 484, 1826, 2640
BalI TGGCCA 4 cut(s) 696, 720, 1020, 1611
BamHI GGATCC 1 cut(s) 2483
BanI GGYRCC 4 cut(s) 335, 602, 2856, 3077
BanII GRGCYC 3 cut(s) 1078, 1126, 2733
BauI CACGAG 1 cut(s) 1295
BbsI GAAGAC 3 cut(s) 3, 3005, 3168
Bbv12I GWGCWC 7 cut(s) 484, 704, 793, 961, 1009, 1078, 2371
BbvCI CCTCAGC 1 cut(s) 2961
BbvI GCAGC 9 cut(s) 16, 49, 288, 1192, 1868, 2063, 2480, 2641, 3169
BcgI CGANNNNNNTGC 4 cut(s) 41, 75, 507, 541
BciT130I CCWGG 5 cut(s) 708, 1968, 2353, 2387, 2772
BclI TGATCA 1 cut(s) 2593
BcoDI GTCTC 6 cut(s) 83, 190, 235, 1626, 2837, 3094
BfaI CTAG 2 cut(s) 930, 1902
BfmI CTRYAG 2 cut(s) 612, 2049
BfoI RGCGCY 2 cut(s) 753, 2860
BfuAI ACCTGC 5 cut(s) 1594, 2080, 2194, 2260, 2965
BglI GCCNNNNNGGC 1 cut(s) 740
BlpI GCTNAGC 1 cut(s) 934
BmcAI AGTACT 4 cut(s) 775, 799, 1393, 1795
Bme1390I CCNGG 5 cut(s) 708, 1968, 2353, 2387, 2772
Bme18I GGWCC 3 cut(s) 252, 1340, 3023
BmgT120I GGNCC 5 cut(s) 252, 741, 1180, 1340, 3023
BmiI GGNNCC 9 cut(s) 253, 254, 337, 604, 742, 1181, 2485, 2858, 3079
BmrFI CCNGG 5 cut(s) 708, 1968, 2353, 2387, 2772
BmrI ACTGGG 4 cut(s) 250, 1850, 3012, 3178
BmsI GCATC 6 cut(s) 49, 467, 1598, 2094, 3039, 3169
BmuI ACTGGG 4 cut(s) 250, 1850, 3012, 3178
BoxI GACNNNNGTC 2 cut(s) 2029, 2227
BpiI GAAGAC 3 cut(s) 3, 3005, 3168
BplI GAGNNNNNCTC 4 cut(s) 520, 552, 2457, 2489
BpmI CTGGAG 3 cut(s) 453, 714, 1608
Bpu10I CCTNAGC 1 cut(s) 2961
Bpu1102I GCTNAGC 1 cut(s) 934
BpuEI CTTGAG 3 cut(s) 1836, 2025, 2888
BsaHI GRCGYC 1 cut(s) 2857
BsaJI CCNNGG 8 cut(s) 706, 721, 2328, 2351, 2352, 2385, 2771, 3066
BsaXI ACNNNNNCTCC 8 cut(s) 760, 790, 943, 973, 991, 1021, 1606, 1636
Bse118I RCCGGY 2 cut(s) 157, 202
Bse1I ACTGG 9 cut(s) 256, 379, 1507, 1800, 1845, 2066, 2751, 3007, 3173
Bse3DI GCAATG 1 cut(s) 1275
BseBI CCWGG 5 cut(s) 708, 1968, 2353, 2387, 2772
BseDI CCNNGG 8 cut(s) 706, 721, 2328, 2351, 2352, 2385, 2771, 3066
BseGI GGATG 9 cut(s) 416, 1487, 1676, 2204, 2208, 2341, 2347, 3178, 3184
BseMI GCAATG 1 cut(s) 1275
BseMII CTCAG 8 cut(s) 156, 948, 1091, 1139, 1901, 2406, 2484, 2952
BseNI ACTGG 9 cut(s) 256, 379, 1507, 1800, 1845, 2066, 2751, 3007, 3173
BseRI GAGGAG 1 cut(s) 2208
BseSI GKGCMC 4 cut(s) 340, 484, 1826, 2640
BseX3I CGGCCG 2 cut(s) 159, 204
BseXI GCAGC 9 cut(s) 16, 49, 288, 1192, 1868, 2063, 2480, 2641, 3169
BseYI CCCAGC 5 cut(s) 306, 658, 913, 1666, 1962
BsgI GTGCAG 3 cut(s) 1395, 2121, 2900
Bsh1236I CGCG 1 cut(s) 2102
Bsh1285I CGRYCG 2 cut(s) 162, 207
BshNI GGYRCC 4 cut(s) 335, 602, 2856, 3077
BsiEI CGRYCG 2 cut(s) 162, 207
BsiHKAI GWGCWC 7 cut(s) 484, 704, 793, 961, 1009, 1078, 2371
BsiSI CCGG 4 cut(s) 158, 203, 779, 2239
BslFI GGGAC 4 cut(s) 238, 871, 2367, 2627
BsmAI GTCTC 6 cut(s) 83, 190, 235, 1626, 2837, 3094
BsmBI CGTCTC 3 cut(s) 190, 235, 1626
BsmFI GGGAC 4 cut(s) 238, 871, 2367, 2627
BsmI GAATGC 2 cut(s) 682, 2443
Bsp1407I TGTACA 1 cut(s) 2056
Bsp1720I GCTNAGC 1 cut(s) 934
BspCNI CTCAG 8 cut(s) 155, 947, 1090, 1138, 1900, 2407, 2485, 2953
BspFNI CGCG 1 cut(s) 2102
BspLI GGNNCC 9 cut(s) 253, 254, 337, 604, 742, 1181, 2485, 2858, 3079
BspMAI CTGCAG 1 cut(s) 2053
BspMI ACCTGC 5 cut(s) 1594, 2080, 2194, 2260, 2965
BspPI GGATC 6 cut(s) 14, 853, 889, 2249, 2478, 2491
BspT107I GGYRCC 4 cut(s) 335, 602, 2856, 3077
BsrBI CCGCTC 4 cut(s) 164, 180, 209, 225
BsrDI GCAATG 1 cut(s) 1275
BsrFI RCCGGY 2 cut(s) 157, 202
BsrGI TGTACA 1 cut(s) 2056
BsrI ACTGG 9 cut(s) 256, 379, 1507, 1800, 1845, 2066, 2751, 3007, 3173
BssAI RCCGGY 2 cut(s) 157, 202
BssECI CCNNGG 8 cut(s) 706, 721, 2328, 2351, 2352, 2385, 2771, 3066
BssNAI GTATAC 2 cut(s) 2622, 3015
BssNI GRCGYC 1 cut(s) 2857
BssSI CACGAG 1 cut(s) 1295
BssT1I CCWWGG 2 cut(s) 721, 2328
Bst1107I GTATAC 2 cut(s) 2622, 3015
Bst2BI CACGAG 1 cut(s) 1295
Bst2UI CCWGG 5 cut(s) 708, 1968, 2353, 2387, 2772
Bst4CI ACNGT 5 cut(s) 1381, 1548, 1725, 2394, 2912
Bst6I CTCTTC 4 cut(s) 1899, 2480, 3050, 3105
BstACI GRCGYC 1 cut(s) 2857
BstAPI GCANNNNNTGC 3 cut(s) 479, 1595, 1862
BstAUI TGTACA 1 cut(s) 2056
BstC8I GCNNGC 8 cut(s) 152, 159, 204, 636, 1170, 1275, 1999, 2168
BstENI CCTNNNNNAGG 1 cut(s) 1098
BstF5I GGATG 9 cut(s) 416, 1487, 1676, 2204, 2208, 2341, 2347, 3178, 3184
BstFNI CGCG 1 cut(s) 2102
BstH2I RGCGCY 2 cut(s) 753, 2860
BstHHI GCGC 4 cut(s) 626, 752, 2191, 2859
BstMAI GTCTC 6 cut(s) 83, 190, 235, 1626, 2837, 3094
BstMCI CGRYCG 2 cut(s) 162, 207
BstNI CCWGG 5 cut(s) 708, 1968, 2353, 2387, 2772
BstNSI RCATGY 1 cut(s) 2170
BstPAI GACNNNNGTC 2 cut(s) 2029, 2227
BstSCI CCNGG 5 cut(s) 706, 1966, 2351, 2385, 2770
BstSFI CTRYAG 2 cut(s) 612, 2049
BstSLI GKGCMC 4 cut(s) 340, 484, 1826, 2640
BstUI CGCG 1 cut(s) 2102
BstV1I GCAGC 9 cut(s) 16, 49, 288, 1192, 1868, 2063, 2480, 2641, 3169
BstV2I GAAGAC 3 cut(s) 3, 3005, 3168
BstX2I RGATCY 2 cut(s) 845, 2483
BstXI CCANNNNNNTGG 3 cut(s) 314, 1190, 2450
BstYI RGATCY 2 cut(s) 845, 2483
BstZ17I GTATAC 2 cut(s) 2622, 3015
BstZI CGGCCG 2 cut(s) 159, 204
BtgZI GCGATG 1 cut(s) 2117
BtsCI GGATG 9 cut(s) 416, 1487, 1676, 2204, 2208, 2341, 2347, 3178, 3184
BtsI GCAGTG 1 cut(s) 1152
BtsIMutI CAGTG 4 cut(s) 1152, 2399, 2429, 3145
BveI ACCTGC 5 cut(s) 1594, 2080, 2194, 2260, 2965
Cac8I GCNNGC 8 cut(s) 152, 159, 204, 636, 1170, 1275, 1999, 2168
CaiI CAGNNNCTG 3 cut(s) 848, 1862, 2072
CfoI GCGC 4 cut(s) 626, 752, 2191, 2859
Cfr10I RCCGGY 2 cut(s) 157, 202
Cfr13I GGNCC 5 cut(s) 252, 741, 1180, 1340, 3023
CseI GACGC 2 cut(s) 1587, 2718
CspCI CAANNNNNGTGG 6 cut(s) 313, 348, 670, 705, 1960, 1995
CviAII CATG 7 cut(s) 2167, 2444, 2555, 2588, 2672, 2813, 3124
DinI GGCGCC 1 cut(s) 2858
DraI TTTAAA 1 cut(s) 2550
DraIII CACNNNGTG 1 cut(s) 2633
EaeI YGGCCR 6 cut(s) 159, 204, 694, 718, 1018, 1609
EagI CGGCCG 2 cut(s) 159, 204
Eam1104I CTCTTC 4 cut(s) 1899, 2480, 3050, 3105
EarI CTCTTC 4 cut(s) 1899, 2480, 3050, 3105
Ecl136II GAGCTC 1 cut(s) 1076
EclXI CGGCCG 2 cut(s) 159, 204
Eco130I CCWWGG 2 cut(s) 721, 2328
Eco24I GRGCYC 3 cut(s) 1078, 1126, 2733
Eco47I GGWCC 3 cut(s) 252, 1340, 3023
Eco47III AGCGCT 1 cut(s) 751
Eco52I CGGCCG 2 cut(s) 159, 204
Eco53kI GAGCTC 1 cut(s) 1076
Eco57I CTGAAG 6 cut(s) 1880, 1900, 2453, 2993, 3074, 3121
EcoICRI GAGCTC 1 cut(s) 1076
EcoNI CCTNNNNNAGG 1 cut(s) 1098
EcoO109I RGGNCCY 1 cut(s) 252
EcoRII CCWGG 5 cut(s) 706, 1966, 2351, 2385, 2770
EcoT14I CCWWGG 2 cut(s) 721, 2328
EcoT22I ATGCAT 1 cut(s) 2990
EcoT38I GRGCYC 3 cut(s) 1078, 1126, 2733
EgeI GGCGCC 1 cut(s) 2858
EheI GGCGCC 1 cut(s) 2858
ErhI CCWWGG 2 cut(s) 721, 2328
Esp3I CGTCTC 3 cut(s) 190, 235, 1626
FaeI CATG 7 cut(s) 2170, 2447, 2558, 2591, 2675, 2816, 3127
FaqI GGGAC 4 cut(s) 238, 871, 2367, 2627
FatI CATG 7 cut(s) 2166, 2443, 2554, 2587, 2671, 2812, 3123
FauI CCCGC 2 cut(s) 1351, 2107
FbaI TGATCA 1 cut(s) 2593
FblI GTMKAC 3 cut(s) 2621, 3014, 3129
FokI GGATG 9 cut(s) 403, 1474, 1663, 2191, 2195, 2334, 2348, 3185, 3191
FriOI GRGCYC 3 cut(s) 1078, 1126, 2733
FspBI CTAG 2 cut(s) 930, 1902
GlaI GCGC 4 cut(s) 625, 751, 2190, 2858
GsaI CCCAGC 5 cut(s) 310, 662, 917, 1670, 1966
GsuI CTGGAG 3 cut(s) 453, 714, 1608
HaeII RGCGCY 2 cut(s) 753, 2860
HapII CCGG 4 cut(s) 158, 203, 779, 2239
HgaI GACGC 2 cut(s) 1587, 2718
HhaI GCGC 4 cut(s) 626, 752, 2191, 2859
Hin1I GRCGYC 1 cut(s) 2857
Hin1II CATG 7 cut(s) 2170, 2447, 2558, 2591, 2675, 2816, 3127
Hin6I GCGC 4 cut(s) 624, 750, 2189, 2857
HinP1I GCGC 4 cut(s) 624, 750, 2189, 2857
HincII GTYRAC 2 cut(s) 1131, 3130
HindII GTYRAC 2 cut(s) 1131, 3130
HinfI GANTC 8 cut(s) 91, 529, 1256, 1399, 1759, 2215, 2615, 2736
HpaII CCGG 4 cut(s) 158, 203, 779, 2239
HphI GGTGA 9 cut(s) 393, 414, 747, 1518, 1536, 1593, 1632, 2660, 2852
Hpy166II GTNNAC 9 cut(s) 482, 1131, 1340, 1640, 2622, 2908, 3015, 3117, 3130
Hpy188III TCNNGA 5 cut(s) 1295, 1879, 2212, 2463, 2867
Hpy8I GTNNAC 9 cut(s) 482, 1131, 1340, 1640, 2622, 2908, 3015, 3117, 3130
Hpy99I CGWCG 2 cut(s) 1621, 2712
HpyCH4III ACNGT 5 cut(s) 1381, 1548, 1725, 2394, 2912
HpyCH4IV ACGT 2 cut(s) 1616, 3119
HpySE526I ACGT 2 cut(s) 1616, 3119
Hsp92I GRCGYC 1 cut(s) 2857
Hsp92II CATG 7 cut(s) 2170, 2447, 2558, 2591, 2675, 2816, 3127
HspAI GCGC 4 cut(s) 624, 750, 2189, 2857
KasI GGCGCC 1 cut(s) 2856
KflI GGGWCCC 1 cut(s) 252
KpnI GGTACC 1 cut(s) 606
KroI GCCGGC 2 cut(s) 157, 202
KroNI GCCGGC 2 cut(s) 159, 204
Ksp22I TGATCA 1 cut(s) 2593
Lsp1109I GCAGC 9 cut(s) 16, 49, 288, 1192, 1868, 2063, 2480, 2641, 3169
LweI GCATC 6 cut(s) 49, 467, 1598, 2094, 3039, 3169
MaeI CTAG 2 cut(s) 930, 1902
MaeII ACGT 2 cut(s) 1616, 3119
MaeIII GTNAC 8 cut(s) 287, 1292, 1513, 1599, 2035, 2200, 2229, 2965
MbiI CCGCTC 4 cut(s) 164, 180, 209, 225
MfeI CAATTG 2 cut(s) 2118, 2658
MflI RGATCY 2 cut(s) 845, 2483
MlsI TGGCCA 4 cut(s) 696, 720, 1020, 1611
MluNI TGGCCA 4 cut(s) 696, 720, 1020, 1611
Mly113I GGCGCC 1 cut(s) 2857
MlyI GAGTC 5 cut(s) 85, 538, 1265, 2209, 2609
MmeI TCCRAC 3 cut(s) 894, 2511, 2731
Mox20I TGGCCA 4 cut(s) 696, 720, 1020, 1611
Mph1103I ATGCAT 1 cut(s) 2990
MroNI GCCGGC 2 cut(s) 157, 202
MroXI GAANNNNTTC 1 cut(s) 2458
MscI TGGCCA 4 cut(s) 696, 720, 1020, 1611
MseI TTAA 7 cut(s) 1446, 1692, 1953, 2549, 2829, 2949, 2982
MslI CAYNNNNRTG 3 cut(s) 2448, 2817, 3138
Msp20I TGGCCA 4 cut(s) 696, 720, 1020, 1611
MspA1I CMGCKG 1 cut(s) 2054
MspI CCGG 4 cut(s) 158, 203, 779, 2239
MspR9I CCNGG 5 cut(s) 708, 1968, 2353, 2387, 2772
MunI CAATTG 2 cut(s) 2118, 2658
Mva1269I GAATGC 2 cut(s) 682, 2443
MvaI CCWGG 5 cut(s) 708, 1968, 2353, 2387, 2772
MvnI CGCG 1 cut(s) 2102
NaeI GCCGGC 2 cut(s) 159, 204
NarI GGCGCC 1 cut(s) 2857
NgoMIV GCCGGC 2 cut(s) 157, 202
NlaIII CATG 7 cut(s) 2170, 2447, 2558, 2591, 2675, 2816, 3127
NlaIV GGNNCC 9 cut(s) 253, 254, 337, 604, 742, 1181, 2485, 2858, 3079
NmeAIII GCCGAG 1 cut(s) 3091
NmuCI GTSAC 4 cut(s) 1292, 1599, 2035, 2229
NsiI ATGCAT 1 cut(s) 2990
NspI RCATGY 1 cut(s) 2170
OliI CACNNNNGTG 1 cut(s) 3138
PaeI GCATGC 1 cut(s) 2170
PaqCI CACCTGC 1 cut(s) 1594
PasI CCCWGGG 1 cut(s) 2352
PcsI WCGNNNNNNNCGW 1 cut(s) 2099
PctI GAATGC 2 cut(s) 682, 2443
PdiI GCCGGC 2 cut(s) 159, 204
PdmI GAANNNNTTC 1 cut(s) 2458
PfeI GAWTC 3 cut(s) 1399, 1759, 2736
PflMI CCANNNNNTGG 9 cut(s) 476, 512, 584, 665, 737, 920, 1145, 1175, 2746
PleI GAGTC 5 cut(s) 85, 537, 1264, 2209, 2609
PluTI GGCGCC 1 cut(s) 2860
PpsI GAGTC 5 cut(s) 85, 537, 1264, 2209, 2609
PpuMI RGGWCCY 1 cut(s) 252
PshAI GACNNNNGTC 2 cut(s) 2029, 2227
Psp124BI GAGCTC 1 cut(s) 1078
Psp5II RGGWCCY 1 cut(s) 252
Psp6I CCWGG 5 cut(s) 706, 1966, 2351, 2385, 2770
PspFI CCCAGC 5 cut(s) 306, 658, 913, 1666, 1962
PspGI CCWGG 5 cut(s) 706, 1966, 2351, 2385, 2770
PspN4I GGNNCC 9 cut(s) 253, 254, 337, 604, 742, 1181, 2485, 2858, 3079
PspPI GGNCC 5 cut(s) 252, 741, 1180, 1340, 3023
PspPPI RGGWCCY 1 cut(s) 252
PsrI GAACNNNNNNTAC 2 cut(s) 1365, 1397
PstI CTGCAG 1 cut(s) 2053
PstNI CAGNNNCTG 3 cut(s) 848, 1862, 2072
PsuI RGATCY 2 cut(s) 845, 2483
PvuII CAGCTG 1 cut(s) 2054
RseI CAYNNNNRTG 3 cut(s) 2448, 2817, 3138
SacI GAGCTC 1 cut(s) 1078
SalI GTCGAC 1 cut(s) 3128
SaqAI TTAA 7 cut(s) 1446, 1692, 1953, 2549, 2829, 2949, 2982
Sau96I GGNCC 5 cut(s) 252, 741, 1180, 1340, 3023
ScaI AGTACT 4 cut(s) 775, 799, 1393, 1795
SchI GAGTC 5 cut(s) 85, 538, 1265, 2209, 2609
ScrFI CCNGG 5 cut(s) 708, 1968, 2353, 2387, 2772
SfaNI GCATC 6 cut(s) 49, 467, 1598, 2094, 3039, 3169
SfcI CTRYAG 2 cut(s) 612, 2049
SfoI GGCGCC 1 cut(s) 2858
SinI GGWCC 3 cut(s) 252, 1340, 3023
SmiI ATTTAAAT 1 cut(s) 2550
SmiMI CAYNNNNRTG 3 cut(s) 2448, 2817, 3138
SmlI CTYRAG 3 cut(s) 1851, 2040, 2867
SmoI CTYRAG 3 cut(s) 1851, 2040, 2867
SphI GCATGC 1 cut(s) 2170
SspDI GGCGCC 1 cut(s) 2856
SspI AATATT 1 cut(s) 2980
SspMI CTAG 2 cut(s) 930, 1902
SstI GAGCTC 1 cut(s) 1078
StyD4I CCNGG 5 cut(s) 706, 1966, 2351, 2385, 2770
StyI CCWWGG 2 cut(s) 721, 2328
SwaI ATTTAAAT 1 cut(s) 2550
TaaI ACNGT 5 cut(s) 1381, 1548, 1725, 2394, 2912
TaiI ACGT 2 cut(s) 1619, 3122
TaqI TCGA 4 cut(s) 119, 527, 2221, 3129
TatI WGTACW 8 cut(s) 767, 773, 797, 1391, 1793, 2056, 2584, 3144
TauI GCSGC 9 cut(s) 157, 164, 180, 202, 209, 225, 1058, 2110, 2753
TfiI GAWTC 3 cut(s) 1399, 1759, 2736
Tru1I TTAA 7 cut(s) 1446, 1692, 1953, 2549, 2829, 2949, 2982
Tru9I TTAA 7 cut(s) 1446, 1692, 1953, 2549, 2829, 2949, 2982
TscAI CASTG 4 cut(s) 1159, 2399, 2436, 3145
TseFI GTSAC 4 cut(s) 1292, 1599, 2035, 2229
TseI GCWGC 9 cut(s) 29, 62, 276, 1205, 1856, 2051, 2468, 2654, 3182
Tsp45I GTSAC 4 cut(s) 1292, 1599, 2035, 2229
TspDTI ATGAA 9 cut(s) 405, 1050, 1509, 1548, 1644, 1806, 2322, 3112, 3174
TspGWI ACGGA 2 cut(s) 172, 217
TspRI CASTG 4 cut(s) 1159, 2399, 2436, 3145
Van91I CCANNNNNTGG 9 cut(s) 476, 512, 584, 665, 737, 920, 1145, 1175, 2746
VneI GTGCAC 1 cut(s) 480
VpaK11BI GGWCC 3 cut(s) 252, 1340, 3023
XagI CCTNNNNNAGG 1 cut(s) 1098
XapI RAATTY 2 cut(s) 2157, 2457
XceI RCATGY 1 cut(s) 2170
XcmI CCANNNNNNNNNTGG 3 cut(s) 263, 704, 1837
XmiI GTMKAC 3 cut(s) 2621, 3014, 3129
XmnI GAANNNNTTC 1 cut(s) 2458
XspI CTAG 2 cut(s) 930, 1902
ZrmI AGTACT 4 cut(s) 775, 799, 1393, 1795
Zsp2I ATGCAT 1 cut(s) 2990
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.