Rroxscaffold_3G00266840

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0007827
Physical Location & Seq
Reverse (-)
59991475 .. 59997271
5797 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00266840.1

Sequence Viewer

Length: 3081 bp
ATGTTTGGTTCTACGAGCCCTTTCGGGCAGTCATCTAACAGCCCATTTGGGTCCCAGTCGGTGTTTGGGCAAAGCAGCAACACAAGTAACAATCCTTTTGCTCCCCAGCCCTTTGGTAGCACCACTCCATTTGGTGCCCAGACAGGGAGTTCCCTATTTGGGGGAACTTCAACTGGCGTATTTGGTCAAAGTCAAACCCAATCCTCGCCTTTCGGTGCTTCATCCTCGCCAGCTTTCGGACAGCAGAGTTCTCCATTTGGAGCATCTTCTACTCCAGCATTTGGTGCACCATCGTCTACTCAAACAAGTCCATTTGGTGGAGCATCCGGTACGTCTGCTTTTGGTCAGAAGCCCGCTTTTGGAGCATTTGGGTCGAGTCCAGCTCAAACAAGTCCATTTGGAAACACAGCTCAACCATCACAACCAGCATTTGGAAGCAATATGTTTGGTACCACCTCTACACCATTTGGTGCAAGTCAGCCTGCATTTGGCACTAATACTGCCCCAGCCTTTGGTTCAACGAACACTACAGCCTTTGGTTCAACAAATACCACAGCCTTTGGTGGCCAGAGCACCCCTGGTTTTGGTGGCCAAGGCACTCCAGCCTTTGGGGCCACAAGCGCTTCACCTTTTGGTAGTACAAGTACTCCGGCGTTTGGTGCTCCAAGCACTCCTACCTTTGGCTCAACACCAAGTCCTACATTTGGAAGCACAGGATCTGCATTTGGGACAACAAGTTCCAACTTGTTTGGATCAGGGGGAGCATTTGGGGCTTCAACCACCCCAGCTTTTGGTCAATCTAGCTCAGCTTTTGGTACTACAACAAGTGCTCCTGCTTTTGGTCAATCAAGTTCAGGTTTTGGCTTTTCAACAAGTGCTCCTGCATTTGGCCAATCAAGTTCAACCTTTGGTAGCACCCAATTTGCAGCTTCATCTCCTTTCGGAGCGCAGAGTTCGCCATCTCCTTTCGGAGCGCAGAGTTCGCCATTTGGGGCTCAGTCAGCAACACCAACACTTGGAAACACTGCCTTTGGACAGCCAGCTTTTGGGGGCCAACGGGGTGGAAGTAGAGTGACTGCTTACACAGGCACATCTGAACCAGATAGTAATGGAATGGGGAAATTGGAGTCAATATCAGCAATGCCAGCCTACAAAGAAAAAAGTCACGAGGAATTGAGATGGGAGGATTACCAATTAGGGGATAAGGGTGGACCGTCTCCTGCTGGTGCGGGTGGCTTTGGCATATCAACTGTACAGACAAATACTTTGAATCCTAATCCTGCACCATCGTTTTCTCAGGCATCTTCAAGTCCTTTTAATACCTCAACCTCATCTGGTTTATTTGCCCAAAAACCCTCATCCTTTCCTTCTACTGGTTTTGGTGTTACTTCATCTTCACCATTTAGTTCAACTTCACCGTTTAGTTCTTCATCAACTCAAACCAATTTTTTTACACCTGCATCATCTGCGTCACCATTTGGCCAAACGTCGTCTCCAGCTATTTTTAGTTCACCGTCTTCCTTTTCATTCTCTACCCCGGCTACATCATCCACTCCCTCATTTAATTTTCCCACTCCGTCAAACCCACAGACACAGTTTGGTCAAACAGGCACTACCTCCTTTGGGCTGAATCCATCTACCTTTGGTTCAAACTTGTTCAATAGTACTTCCAGTTTGCAGAGCAGTTCATTGGGTACTACAAGCAACCAACTGGGTCTTACTCAACCAGCTCCTGCTTTTCCTACTTTCCAGACATCTCAGCCTCTTCAGTCTAGTCCTTTTGCCTTCAGCAACACCAATGCCTTCAGCAACACCAACACCTTTAATCAACCCCAGCCAGGCAACACAGGTGCTTTTGGTGGTTTAGCAGGCATTTCTGGTCAGAACAACTTTGGACAATCGTCTGTGGCTCAAGGCTCTGCAGCTGTACAACAACCAGTACCTGCTACAAATCCATTTGGAACGCTCCCGGCGATGCCTCAGATGTCAATTGGTCGTGGGGGAACTGCACCGTCAATTCAATATGGAATTTCAAGCATGCCTGTTGCGGATAAACCTGCCCCCGTTAGGGTAACATCCATCCTGACTCCTCGACACCTGTCACAACGCCGGATCAGATTACCTGCAAGAAAATATAATCCTAAGAATGATAACCCAAAGGCTTTTTTCAGTGATGATGAAGAAACACCCTCTACACCCAAGGGGGATGTTGTTTTCCATCCCAGGGAAAACCCAAGAGCACTCGTCATTCGTCCCCAAGAACAGTGGCCTCTTAGAGCGAGTGCTGAGAAAGCAACAGCACTGAAGAATACAACTACTCCAGTCCATGAGAATGGAAAAATTTCGGGAGCAGCACTCTTCGGGGGATCCAACTCTGAGGATAAAGACGAACCAGAAACTCTGCAAGAAAATGGTGCTGTTAAGGAGCATTTAAATCATGTCAAAGCTAATCAGAAACCTAATGGAGTACATGATGATCATGCTGTTCAGAAAGGGGACTCGTATACAACACTAAGTGGGCACAGAGCTGGTGAGGCTGCAATTGTGTATGAGCATGGTGCTGACATTGAGGCACAAATGCCAAAGCTCCGACACTCTGAGTACTACACAGAGCCCCGAATCCAAGAACTGGCGGCAAAGGAAAGGGCAGAGCCAGGGTTCTGCTGTCGTGTGAAGGACTTTGTGGTTGGGCGACATGGTTATGGTAGCATTAAGTTCTTGGGTGAGACAGATGTAAGGCGCCTTGATCTTGAGGCTCTGGTGCAGTTCAATAATAAGGAGGTAATCGTGTACCGTGATGAGAACAAGAAGCCTCCTGTCGGGCAAGGGCTTAATAAACCTGCTGAGGTTACACTTCTCAACATTAAATGCATCGAGAAGAAGACTGGGCTTCAGTATACAGAAGGACCAAAAGTTGAGAAATACAAGGAGATGCTGAAGAGGAAGGCCGAGGAACAAGGTGCCAAGTTTGTCTCCTTTGACCCTAAGAAGGAAGAGTGGACGTTCATGGTCGACCACTTCAGTGAGTACAAGTTGAGAGATGAAGACGACTGGGATGTGGATGCTGCCCAAGATTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000972 GO:0000973 GO:0003674 GO:0003676 GO:0003682 GO:0003712 GO:0003713 GO:0003723 GO:0003729 GO:0005048 GO:0005198 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008139 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016032 GO:0016043 GO:0016234 GO:0016604 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0022607 GO:0031080 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033120 GO:0033218 GO:0033365 GO:0034397 GO:0034398 GO:0034399 GO:0034504 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0042277 GO:0042405 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044614 GO:0044615 GO:0045184 GO:0045935 GO:0046483 GO:0046907 GO:0046931 GO:0048024 GO:0048026 GO:0048518 GO:0048522 GO:0048583 GO:0050000 GO:0050657 GO:0050658 GO:0050684 GO:0050685 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051254 GO:0051276 GO:0051292 GO:0051640 GO:0051641 GO:0051649 GO:0051704 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1902446 GO:1902680 GO:1903311 GO:1903313 GO:1903506 GO:1903508 GO:1990841 GO:1990904 GO:2000030 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03013 ko05164 map03013 map05164
Pfam Domains
Protein Families
Nucleoporin2

Protein Analysis

1026

Amino Acids

106.25

Weight (kDa)

6.7

Isoelectric Point (pI)

57.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nup98_GLEBS PF21240 378 - 397 3.4e-06 Nup98, Gle2-binding sequence
Nucleoporin2 PF04096 866 - 1012 1.7e-44 Nup98-96 autopeptidase S59
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1465
Acc36I ACCTGC 5 cut(s) 1465, 1951, 2065, 2131, 2848
Acc65I GGTACC 1 cut(s) 449
AccB1I GGYRCC 4 cut(s) 134, 449, 2739, 2960
AccB7I CCANNNNNTGG 9 cut(s) 281, 317, 431, 512, 608, 791, 1016, 1046, 2629
AccI GTMKAC 4 cut(s) 296, 2504, 2897, 3012
AciI CCGC 4 cut(s) 354, 1229, 2048, 2633
AclWI GGATC 5 cut(s) 724, 760, 2120, 2361, 2374
AcoI YGGCCR 4 cut(s) 565, 589, 889, 1480
AcsI RAATTY 2 cut(s) 2028, 2340
AcuI CTGAAG 7 cut(s) 1751, 1771, 1789, 2324, 2876, 2957, 3004
AcyI GRCGYC 1 cut(s) 2740
AdeI CACNNNGTG 1 cut(s) 2516
AfeI AGCGCT 1 cut(s) 622
AjnI CCWGG 4 cut(s) 577, 1837, 2222, 2653
AleI CACNNNNGTG 1 cut(s) 3021
AloI GAACNNNNNNTCC 2 cut(s) 721, 753
Alw21I GWGCWC 6 cut(s) 289, 575, 664, 832, 880, 2242
Alw26I GTCTC 4 cut(s) 1221, 1497, 2720, 2977
Alw44I GTGCAC 1 cut(s) 285
AlwI GGATC 5 cut(s) 724, 760, 2120, 2361, 2374
AlwNI CAGNNNCTG 3 cut(s) 719, 1733, 1943
Aor51HI AGCGCT 1 cut(s) 622
AoxI GGCC 8 cut(s) 565, 589, 612, 889, 1051, 1480, 2267, 2946
ApaLI GTGCAC 1 cut(s) 285
ApeKI GCWGC 6 cut(s) 75, 926, 1922, 2351, 2537, 3065
ApoI RAATTY 2 cut(s) 2028, 2340
ArsI GACNNNNNNTTYG 2 cut(s) 1249, 1281
Asp700I GAANNNNTTC 1 cut(s) 2341
Asp718I GGTACC 1 cut(s) 449
AspLEI GCGC 4 cut(s) 623, 949, 976, 2742
AspS9I GGNCC 5 cut(s) 51, 612, 1051, 1211, 2906
AsuC2I CCSGG 2 cut(s) 1538, 1970
AsuHPI GGTGA 7 cut(s) 618, 1389, 1407, 1464, 1503, 2543, 2735
AvaII GGWCC 3 cut(s) 51, 1211, 2906
BaeGI GKGCMC 3 cut(s) 139, 289, 2523
BalI TGGCCA 4 cut(s) 567, 591, 891, 1482
BamHI GGATCC 1 cut(s) 2366
BanI GGYRCC 4 cut(s) 134, 449, 2739, 2960
BanII GRGCYC 3 cut(s) 20, 997, 2616
BauI CACGAG 1 cut(s) 1166
BbsI GAAGAC 3 cut(s) 1509, 2888, 3051
Bbv12I GWGCWC 6 cut(s) 289, 575, 664, 832, 880, 2242
BbvCI CCTCAGC 1 cut(s) 2844
BbvI GCAGC 6 cut(s) 87, 938, 1934, 2363, 2524, 3052
BccI CCATC 8 cut(s) 298, 424, 967, 1173, 1294, 1642, 2087, 2226
BcgI CGANNNNNNTGC 2 cut(s) 354, 388
BciT130I CCWGG 4 cut(s) 579, 1839, 2224, 2655
BclI TGATCA 1 cut(s) 2476
BcnI CCSGG 2 cut(s) 1538, 1970
BcoDI GTCTC 4 cut(s) 1221, 1497, 2720, 2977
BfaI CTAG 2 cut(s) 801, 1773
BfmI CTRYAG 2 cut(s) 528, 1920
BfoI RGCGCY 2 cut(s) 624, 2743
BfuAI ACCTGC 5 cut(s) 1465, 1951, 2065, 2131, 2848
BglI GCCNNNNNGGC 1 cut(s) 611
BisI GCNGC 7 cut(s) 76, 927, 1923, 2352, 2538, 2634, 3066
BlpI GCTNAGC 1 cut(s) 805
BlsI GCNGC 7 cut(s) 77, 928, 1924, 2353, 2539, 2635, 3067
BmcAI AGTACT 3 cut(s) 646, 1666, 2603
Bme1390I CCNGG 6 cut(s) 579, 1538, 1839, 1970, 2224, 2655
Bme18I GGWCC 3 cut(s) 51, 1211, 2906
BmgT120I GGNCC 5 cut(s) 51, 612, 1051, 1211, 2906
BmiI GGNNCC 9 cut(s) 52, 53, 136, 451, 613, 1052, 2368, 2741, 2962
BmrFI CCNGG 6 cut(s) 579, 1538, 1839, 1970, 2224, 2655
BmrI ACTGGG 4 cut(s) 49, 1721, 2895, 3061
BmsI GCATC 8 cut(s) 272, 332, 1310, 1469, 1965, 2880, 2922, 3052
BmuI ACTGGG 4 cut(s) 49, 1721, 2895, 3061
BoxI GACNNNNGTC 2 cut(s) 1900, 2098
BpiI GAAGAC 3 cut(s) 1509, 2888, 3051
BplI GAGNNNNNCTC 4 cut(s) 367, 399, 2340, 2372
BpmI CTGGAG 4 cut(s) 258, 585, 1479, 2304
Bpu10I CCTNAGC 1 cut(s) 2844
Bpu1102I GCTNAGC 1 cut(s) 805
BpuEI CTTGAG 2 cut(s) 1896, 2771
BpuMI CCSGG 2 cut(s) 1538, 1970
BsaHI GRCGYC 1 cut(s) 2740
BsaJI CCNNGG 8 cut(s) 577, 592, 1536, 2199, 2222, 2223, 2654, 2949
BsaWI WCCGGW 1 cut(s) 326
Bse3DI GCAATG 1 cut(s) 1146
BseBI CCWGG 4 cut(s) 579, 1839, 2224, 2655
BseDI CCNNGG 8 cut(s) 577, 592, 1536, 2199, 2222, 2223, 2654, 2949
BseMI GCAATG 1 cut(s) 1146
BseMII CTCAG 9 cut(s) 819, 1010, 1310, 1772, 1994, 2277, 2367, 2589, 2835
BseRI GAGGAG 1 cut(s) 2079
BseSI GKGCMC 3 cut(s) 139, 289, 2523
BseXI GCAGC 6 cut(s) 87, 938, 1934, 2363, 2524, 3052
BseYI CCCAGC 4 cut(s) 105, 505, 784, 1833
BsgI GTGCAG 3 cut(s) 1266, 1992, 2783
BshFI GGCC 8 cut(s) 567, 591, 614, 891, 1053, 1482, 2269, 2948
BshNI GGYRCC 4 cut(s) 134, 449, 2739, 2960
BsiHKAI GWGCWC 6 cut(s) 289, 575, 664, 832, 880, 2242
BsiSI CCGG 5 cut(s) 327, 650, 1538, 1970, 2110
BslFI GGGAC 4 cut(s) 37, 742, 2238, 2510
BsmAI GTCTC 4 cut(s) 1221, 1497, 2720, 2977
BsmBI CGTCTC 2 cut(s) 1221, 1497
BsmFI GGGAC 4 cut(s) 37, 742, 2238, 2510
BsnI GGCC 8 cut(s) 567, 591, 614, 891, 1053, 1482, 2269, 2948
Bsp1407I TGTACA 2 cut(s) 1252, 1927
Bsp143I GATC 6 cut(s) 716, 752, 2112, 2366, 2476, 2746
Bsp1720I GCTNAGC 1 cut(s) 805
BspACI CCGC 4 cut(s) 354, 1229, 2048, 2633
BspANI GGCC 8 cut(s) 567, 591, 614, 891, 1053, 1482, 2269, 2948
BspCNI CTCAG 9 cut(s) 818, 1009, 1309, 1771, 1993, 2278, 2368, 2590, 2836
BspLI GGNNCC 9 cut(s) 52, 53, 136, 451, 613, 1052, 2368, 2741, 2962
BspMAI CTGCAG 1 cut(s) 1924
BspMI ACCTGC 5 cut(s) 1465, 1951, 2065, 2131, 2848
BspPI GGATC 5 cut(s) 724, 760, 2120, 2361, 2374
BspT107I GGYRCC 4 cut(s) 134, 449, 2739, 2960
BsrDI GCAATG 1 cut(s) 1146
BsrGI TGTACA 2 cut(s) 1252, 1927
BssECI CCNNGG 8 cut(s) 577, 592, 1536, 2199, 2222, 2223, 2654, 2949
BssMI GATC 6 cut(s) 716, 752, 2112, 2366, 2476, 2746
BssNAI GTATAC 2 cut(s) 2505, 2898
BssNI GRCGYC 1 cut(s) 2740
BssSI CACGAG 1 cut(s) 1166
BssT1I CCWWGG 2 cut(s) 592, 2199
Bst1107I GTATAC 2 cut(s) 2505, 2898
Bst2BI CACGAG 1 cut(s) 1166
Bst2UI CCWGG 4 cut(s) 579, 1839, 2224, 2655
Bst4CI ACNGT 8 cut(s) 1215, 1252, 1419, 1515, 1596, 2013, 2265, 2795
Bst6I CTCTTC 4 cut(s) 1770, 2363, 2933, 2988
BstACI GRCGYC 1 cut(s) 2740
BstAPI GCANNNNNTGC 2 cut(s) 284, 1466
BstAUI TGTACA 2 cut(s) 1252, 1927
BstC8I GCNNGC 7 cut(s) 231, 354, 483, 1041, 1146, 1870, 2039
BstH2I RGCGCY 2 cut(s) 624, 2743
BstHHI GCGC 4 cut(s) 623, 949, 976, 2742
BstKTI GATC 6 cut(s) 719, 755, 2115, 2369, 2479, 2749
BstMAI GTCTC 4 cut(s) 1221, 1497, 2720, 2977
BstMBI GATC 6 cut(s) 716, 752, 2112, 2366, 2476, 2746
BstNI CCWGG 4 cut(s) 579, 1839, 2224, 2655
BstNSI RCATGY 1 cut(s) 2041
BstPAI GACNNNNGTC 2 cut(s) 1900, 2098
BstSCI CCNGG 6 cut(s) 577, 1536, 1837, 1968, 2222, 2653
BstSFI CTRYAG 2 cut(s) 528, 1920
BstSLI GKGCMC 3 cut(s) 139, 289, 2523
BstV1I GCAGC 6 cut(s) 87, 938, 1934, 2363, 2524, 3052
BstV2I GAAGAC 3 cut(s) 1509, 2888, 3051
BstX2I RGATCY 2 cut(s) 716, 2366
BstXI CCANNNNNNTGG 3 cut(s) 113, 1061, 2333
BstYI RGATCY 2 cut(s) 716, 2366
BstZ17I GTATAC 2 cut(s) 2505, 2898
BsuRI GGCC 8 cut(s) 567, 591, 614, 891, 1053, 1482, 2269, 2948
BtgZI GCGATG 1 cut(s) 1988
BtsI GCAGTG 1 cut(s) 1023
BtsIMutI CAGTG 5 cut(s) 1023, 2176, 2270, 2300, 3028
BveI ACCTGC 5 cut(s) 1465, 1951, 2065, 2131, 2848
Cac8I GCNNGC 7 cut(s) 231, 354, 483, 1041, 1146, 1870, 2039
CaiI CAGNNNCTG 3 cut(s) 719, 1733, 1943
CfoI GCGC 4 cut(s) 623, 949, 976, 2742
Cfr13I GGNCC 5 cut(s) 51, 612, 1051, 1211, 2906
CseI GACGC 1 cut(s) 1458
CspCI CAANNNNNGTGG 6 cut(s) 112, 147, 541, 576, 2246, 2281
CviAII CATG 8 cut(s) 2038, 2327, 2438, 2471, 2480, 2555, 2696, 3007
DinI GGCGCC 1 cut(s) 2741
DpnI GATC 6 cut(s) 718, 754, 2114, 2368, 2478, 2748
DpnII GATC 6 cut(s) 716, 752, 2112, 2366, 2476, 2746
DraI TTTAAA 1 cut(s) 2433
DraIII CACNNNGTG 1 cut(s) 2516
EaeI YGGCCR 4 cut(s) 565, 589, 889, 1480
Eam1104I CTCTTC 4 cut(s) 1770, 2363, 2933, 2988
EarI CTCTTC 4 cut(s) 1770, 2363, 2933, 2988
Eco130I CCWWGG 2 cut(s) 592, 2199
Eco24I GRGCYC 3 cut(s) 20, 997, 2616
Eco47I GGWCC 3 cut(s) 51, 1211, 2906
Eco47III AGCGCT 1 cut(s) 622
Eco57I CTGAAG 7 cut(s) 1751, 1771, 1789, 2324, 2876, 2957, 3004
EcoO109I RGGNCCY 1 cut(s) 51
EcoRII CCWGG 4 cut(s) 577, 1837, 2222, 2653
EcoT14I CCWWGG 2 cut(s) 592, 2199
EcoT22I ATGCAT 1 cut(s) 2873
EcoT38I GRGCYC 3 cut(s) 20, 997, 2616
EgeI GGCGCC 1 cut(s) 2741
EheI GGCGCC 1 cut(s) 2741
ErhI CCWWGG 2 cut(s) 592, 2199
Esp3I CGTCTC 2 cut(s) 1221, 1497
FaeI CATG 8 cut(s) 2041, 2330, 2441, 2474, 2483, 2558, 2699, 3010
FaqI GGGAC 4 cut(s) 37, 742, 2238, 2510
FatI CATG 8 cut(s) 2037, 2326, 2437, 2470, 2479, 2554, 2695, 3006
FauI CCCGC 2 cut(s) 361, 1222
FbaI TGATCA 1 cut(s) 2476
FblI GTMKAC 4 cut(s) 296, 2504, 2897, 3012
Fnu4HI GCNGC 7 cut(s) 76, 927, 1923, 2352, 2538, 2634, 3066
FriOI GRGCYC 3 cut(s) 20, 997, 2616
Fsp4HI GCNGC 7 cut(s) 76, 927, 1923, 2352, 2538, 2634, 3066
FspBI CTAG 2 cut(s) 801, 1773
GlaI GCGC 4 cut(s) 622, 948, 975, 2741
GluI GCNGC 7 cut(s) 76, 927, 1923, 2352, 2538, 2634, 3066
GsaI CCCAGC 4 cut(s) 109, 509, 788, 1837
GsuI CTGGAG 4 cut(s) 258, 585, 1479, 2304
HaeII RGCGCY 2 cut(s) 624, 2743
HaeIII GGCC 8 cut(s) 567, 591, 614, 891, 1053, 1482, 2269, 2948
HapII CCGG 5 cut(s) 327, 650, 1538, 1970, 2110
HgaI GACGC 1 cut(s) 1458
HhaI GCGC 4 cut(s) 623, 949, 976, 2742
Hin1I GRCGYC 1 cut(s) 2740
Hin1II CATG 8 cut(s) 2041, 2330, 2441, 2474, 2483, 2558, 2699, 3010
Hin6I GCGC 4 cut(s) 621, 947, 974, 2740
HinP1I GCGC 4 cut(s) 621, 947, 974, 2740
HincII GTYRAC 1 cut(s) 3013
HindII GTYRAC 1 cut(s) 3013
HinfI GANTC 7 cut(s) 376, 1127, 1270, 1630, 2086, 2498, 2619
HpaII CCGG 5 cut(s) 327, 650, 1538, 1970, 2110
HphI GGTGA 7 cut(s) 618, 1389, 1407, 1464, 1503, 2543, 2735
Hpy166II GTNNAC 9 cut(s) 287, 297, 1211, 1511, 2505, 2791, 2898, 3000, 3013
Hpy188III TCNNGA 6 cut(s) 1166, 1750, 2083, 2346, 2750, 2875
Hpy8I GTNNAC 9 cut(s) 287, 297, 1211, 1511, 2505, 2791, 2898, 3000, 3013
Hpy99I CGWCG 1 cut(s) 1492
HpyAV CCTTC 7 cut(s) 1377, 1795, 1813, 2668, 2897, 2938, 2983
HpyCH4III ACNGT 8 cut(s) 1215, 1252, 1419, 1515, 1596, 2013, 2265, 2795
HpyCH4IV ACGT 3 cut(s) 332, 1487, 3002
HpySE526I ACGT 3 cut(s) 332, 1487, 3002
Hsp92I GRCGYC 1 cut(s) 2740
Hsp92II CATG 8 cut(s) 2041, 2330, 2441, 2474, 2483, 2558, 2699, 3010
HspAI GCGC 4 cut(s) 621, 947, 974, 2740
KasI GGCGCC 1 cut(s) 2739
KflI GGGWCCC 1 cut(s) 51
KpnI GGTACC 1 cut(s) 453
Ksp22I TGATCA 1 cut(s) 2476
Kzo9I GATC 6 cut(s) 716, 752, 2112, 2366, 2476, 2746
Lsp1109I GCAGC 6 cut(s) 87, 938, 1934, 2363, 2524, 3052
LweI GCATC 8 cut(s) 272, 332, 1310, 1469, 1965, 2880, 2922, 3052
MaeI CTAG 2 cut(s) 801, 1773
MaeII ACGT 3 cut(s) 332, 1487, 3002
MaeIII GTNAC 8 cut(s) 86, 1072, 1163, 1384, 1470, 2071, 2100, 2848
MalI GATC 6 cut(s) 718, 754, 2114, 2368, 2478, 2748
MboI GATC 6 cut(s) 716, 752, 2112, 2366, 2476, 2746
MfeI CAATTG 2 cut(s) 1989, 2541
MflI RGATCY 2 cut(s) 716, 2366
MlsI TGGCCA 4 cut(s) 567, 591, 891, 1482
MluNI TGGCCA 4 cut(s) 567, 591, 891, 1482
Mly113I GGCGCC 1 cut(s) 2740
MlyI GAGTC 4 cut(s) 385, 1136, 2080, 2492
MmeI TCCRAC 3 cut(s) 765, 2394, 2614
Mox20I TGGCCA 4 cut(s) 567, 591, 891, 1482
Mph1103I ATGCAT 1 cut(s) 2873
MroXI GAANNNNTTC 1 cut(s) 2341
MscI TGGCCA 4 cut(s) 567, 591, 891, 1482
MseI TTAA 8 cut(s) 1317, 1563, 1824, 2421, 2432, 2712, 2832, 2865
MslI CAYNNNNRTG 3 cut(s) 2331, 2700, 3021
Msp20I TGGCCA 4 cut(s) 567, 591, 891, 1482
MspA1I CMGCKG 1 cut(s) 1925
MspI CCGG 5 cut(s) 327, 650, 1538, 1970, 2110
MspR9I CCNGG 6 cut(s) 579, 1538, 1839, 1970, 2224, 2655
MunI CAATTG 2 cut(s) 1989, 2541
MvaI CCWGG 4 cut(s) 579, 1839, 2224, 2655
NarI GGCGCC 1 cut(s) 2740
NciI CCSGG 2 cut(s) 1538, 1970
NdeII GATC 6 cut(s) 716, 752, 2112, 2366, 2476, 2746
NlaIII CATG 8 cut(s) 2041, 2330, 2441, 2474, 2483, 2558, 2699, 3010
NlaIV GGNNCC 9 cut(s) 52, 53, 136, 451, 613, 1052, 2368, 2741, 2962
NmeAIII GCCGAG 1 cut(s) 2974
NmuCI GTSAC 4 cut(s) 1072, 1163, 1470, 2100
NsiI ATGCAT 1 cut(s) 2873
NspI RCATGY 1 cut(s) 2041
OliI CACNNNNGTG 1 cut(s) 3021
PaeI GCATGC 1 cut(s) 2041
PaqCI CACCTGC 1 cut(s) 1465
PasI CCCWGGG 1 cut(s) 2223
PcsI WCGNNNNNNNCGW 1 cut(s) 1970
PdmI GAANNNNTTC 1 cut(s) 2341
PfeI GAWTC 3 cut(s) 1270, 1630, 2619
PflMI CCANNNNNTGG 9 cut(s) 281, 317, 431, 512, 608, 791, 1016, 1046, 2629
PkrI GCNGC 7 cut(s) 77, 928, 1924, 2353, 2539, 2635, 3067
PleI GAGTC 4 cut(s) 384, 1135, 2080, 2492
PluTI GGCGCC 1 cut(s) 2743
PpsI GAGTC 4 cut(s) 384, 1135, 2080, 2492
PpuMI RGGWCCY 1 cut(s) 51
PshAI GACNNNNGTC 2 cut(s) 1900, 2098
Psp5II RGGWCCY 1 cut(s) 51
Psp6I CCWGG 4 cut(s) 577, 1837, 2222, 2653
PspFI CCCAGC 4 cut(s) 105, 505, 784, 1833
PspGI CCWGG 4 cut(s) 577, 1837, 2222, 2653
PspN4I GGNNCC 9 cut(s) 52, 53, 136, 451, 613, 1052, 2368, 2741, 2962
PspPI GGNCC 5 cut(s) 51, 612, 1051, 1211, 2906
PspPPI RGGWCCY 1 cut(s) 51
PstI CTGCAG 1 cut(s) 1924
PstNI CAGNNNCTG 3 cut(s) 719, 1733, 1943
PsuI RGATCY 2 cut(s) 716, 2366
PvuII CAGCTG 1 cut(s) 1925
RseI CAYNNNNRTG 3 cut(s) 2331, 2700, 3021
SalI GTCGAC 1 cut(s) 3011
SaqAI TTAA 8 cut(s) 1317, 1563, 1824, 2421, 2432, 2712, 2832, 2865
SatI GCNGC 7 cut(s) 76, 927, 1923, 2352, 2538, 2634, 3066
Sau3AI GATC 6 cut(s) 716, 752, 2112, 2366, 2476, 2746
Sau96I GGNCC 5 cut(s) 51, 612, 1051, 1211, 2906
ScaI AGTACT 3 cut(s) 646, 1666, 2603
SchI GAGTC 4 cut(s) 385, 1136, 2080, 2492
ScrFI CCNGG 6 cut(s) 579, 1538, 1839, 1970, 2224, 2655
SfaNI GCATC 8 cut(s) 272, 332, 1310, 1469, 1965, 2880, 2922, 3052
SfcI CTRYAG 2 cut(s) 528, 1920
SfoI GGCGCC 1 cut(s) 2741
SinI GGWCC 3 cut(s) 51, 1211, 2906
SmiI ATTTAAAT 1 cut(s) 2433
SmiMI CAYNNNNRTG 3 cut(s) 2331, 2700, 3021
SmlI CTYRAG 2 cut(s) 1911, 2750
SmoI CTYRAG 2 cut(s) 1911, 2750
SphI GCATGC 1 cut(s) 2041
SsiI CCGC 4 cut(s) 354, 1229, 2048, 2633
SspDI GGCGCC 1 cut(s) 2739
SspMI CTAG 2 cut(s) 801, 1773
StyD4I CCNGG 6 cut(s) 577, 1536, 1837, 1968, 2222, 2653
StyI CCWWGG 2 cut(s) 592, 2199
SwaI ATTTAAAT 1 cut(s) 2433
TaaI ACNGT 8 cut(s) 1215, 1252, 1419, 1515, 1596, 2013, 2265, 2795
TaiI ACGT 3 cut(s) 335, 1490, 3005
TaqI TCGA 4 cut(s) 374, 2092, 2874, 3012
TatI WGTACW 8 cut(s) 638, 644, 1252, 1664, 1927, 2467, 2601, 3027
TauI GCSGC 1 cut(s) 2636
TfiI GAWTC 3 cut(s) 1270, 1630, 2619
Tru1I TTAA 8 cut(s) 1317, 1563, 1824, 2421, 2432, 2712, 2832, 2865
Tru9I TTAA 8 cut(s) 1317, 1563, 1824, 2421, 2432, 2712, 2832, 2865
TscAI CASTG 5 cut(s) 1030, 2176, 2270, 2307, 3028
TseFI GTSAC 4 cut(s) 1072, 1163, 1470, 2100
TseI GCWGC 6 cut(s) 75, 926, 1922, 2351, 2537, 3065
Tsp45I GTSAC 4 cut(s) 1072, 1163, 1470, 2100
TspDTI ATGAA 9 cut(s) 210, 921, 1380, 1419, 1515, 1677, 2193, 2995, 3057
TspGWI ACGGA 1 cut(s) 1566
TspRI CASTG 5 cut(s) 1030, 2176, 2270, 2307, 3028
Van91I CCANNNNNTGG 9 cut(s) 281, 317, 431, 512, 608, 791, 1016, 1046, 2629
VneI GTGCAC 1 cut(s) 285
VpaK11BI GGWCC 3 cut(s) 51, 1211, 2906
XapI RAATTY 2 cut(s) 2028, 2340
XceI RCATGY 1 cut(s) 2041
XcmI CCANNNNNNNNNTGG 2 cut(s) 62, 575
XmiI GTMKAC 4 cut(s) 296, 2504, 2897, 3012
XmnI GAANNNNTTC 1 cut(s) 2341
XspI CTAG 2 cut(s) 801, 1773
ZrmI AGTACT 3 cut(s) 646, 1666, 2603
Zsp2I ATGCAT 1 cut(s) 2873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.