Rh7CG092200

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0007827
Physical Location & Seq
Forward (+)
6971932 .. 6974322
2391 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG092200.1

Sequence Viewer

Length: 1065 bp
ATGATATTAATACTTGGTCATAATCTTGTGTATTTAGTTGTTGCGGATAAACCTGTGCCCGTTAGGGTAACATCTATCCTGACTCCTCGACACCTGTCACAACGCCGGATCAGATTACCTGCAAGAAAATATAATCCTAAGAATGATAACCCAAAGGCTTTTTTTAGTGATGATGAAGAAACACCTTCTACACCCAAGGGGGATGTTGTTTTCCATCCCAGGGAAAACCCAAGAGCACTTGTCATTCGTCCCCAGGAACAGTGGCCTCTAAGAGCGAGTGCTGAGAAAGCAACAGCACTGAAGAATGCCCATGAGAATGGAAAAATTTCGGGAGCAGCACTCTTCAGGGGATCCAACTCTGAGGATAAAGACGAACCAGAAACTCTGCAAGAAAATGGTGCTGTCAAGGAGCATTTAAATCATGTCAAAGCTAATCAGAAACCTAATGGAGTACATGATGATCACTCTGTTCAGAAAGGGGACTCGTATACAACACTAAGTGGGCACAGAGCTGGTGAGGCTGCAATTGTGTATGAGCATGGTGCTGACATTGAGGCACAAATGCCGAAGCTCCGACGCTCTGATTACTACACAGAGCCCCGAATCCAAGAACTGGCAGCAAAGGAAAGGGCAGAGCCAGGGTTCTGCTGTCGTGTGAAGGACTTTGTGGTTGGGCGACATGGTTGTGGTAGCATTAAGTTCTTGGGTGAGACAGATGTAAGGCGCCTTGATCTTGAGGCTCTGGTGCAGTTCAATAATAAGGAGGTAATCGTGTACCGTGATGAGAACAAGAAGCCTCCTGTCGGGCAAGGGCTTAATAAACCTGCTGAGGTTACACTTCTCAACATTAAATGCATTGAGAAGAAGACTGGGCTTCAGTATACAGAAGGACCAAAAGTTGAGAAATACAAGGAGATGCTGAAGAGGAAGGCCGAGGAACAAGGTGCCAAGTTTGTCTCCTTTGACCCAAAGAAGGAAGAGTGGACGTTCATGGTCGACCACTTCAGTGAGTACAAGTTGAGAGATGAAGACGACTGGGATGTGGATGCTGCCCAAGATTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000972 GO:0000973 GO:0003674 GO:0003676 GO:0003682 GO:0003712 GO:0003713 GO:0003723 GO:0003729 GO:0005048 GO:0005198 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008139 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016032 GO:0016043 GO:0016234 GO:0016604 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0022607 GO:0031080 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033120 GO:0033218 GO:0033365 GO:0034397 GO:0034398 GO:0034399 GO:0034504 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0042277 GO:0042405 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044614 GO:0044615 GO:0045184 GO:0045935 GO:0046483 GO:0046907 GO:0046931 GO:0048024 GO:0048026 GO:0048518 GO:0048522 GO:0048583 GO:0050000 GO:0050657 GO:0050658 GO:0050684 GO:0050685 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051254 GO:0051276 GO:0051292 GO:0051640 GO:0051641 GO:0051649 GO:0051704 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1902446 GO:1902680 GO:1903311 GO:1903313 GO:1903506 GO:1903508 GO:1990841 GO:1990904 GO:2000030 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03013 ko05164 map03013 map05164
Pfam Domains
Protein Families
Nucleoporin2

Protein Analysis

354

Amino Acids

40.18

Weight (kDa)

6.88

Isoelectric Point (pI)

33.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleoporin2 PF04096 194 - 340 4e-45 Nup98-96 autopeptidase S59
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 127, 832
AccB1I GGYRCC 2 cut(s) 723, 944
AccB7I CCANNNNNTGG 1 cut(s) 613
AccI GTMKAC 3 cut(s) 488, 881, 996
AciI CCGC 1 cut(s) 44
AclWI GGATC 3 cut(s) 116, 345, 358
AcsI RAATTY 1 cut(s) 324
AcuI CTGAAG 5 cut(s) 320, 328, 860, 941, 988
AcyI GRCGYC 1 cut(s) 724
AdeI CACNNNGTG 1 cut(s) 500
AfaI GTAC 3 cut(s) 453, 776, 1013
AfiI CCNNNNNNNGG 4 cut(s) 220, 613, 803, 973
AgsI TTSAA 1 cut(s) 754
AjnI CCWGG 3 cut(s) 218, 252, 637
AleI CACNNNNGTG 1 cut(s) 1005
AluBI AGCT 3 cut(s) 431, 512, 571
AluI AGCT 3 cut(s) 431, 512, 571
Alw21I GWGCWC 1 cut(s) 238
Alw26I GTCTC 2 cut(s) 704, 961
AlwI GGATC 3 cut(s) 116, 345, 358
AoxI GGCC 2 cut(s) 263, 930
ApeKI GCWGC 4 cut(s) 335, 521, 617, 1049
ApoI RAATTY 1 cut(s) 324
AseI ATTAAT 1 cut(s) 8
Asp700I GAANNNNTTC 1 cut(s) 325
AspLEI GCGC 1 cut(s) 726
AspS9I GGNCC 1 cut(s) 890
AsuHPI GGTGA 2 cut(s) 527, 719
AvaII GGWCC 1 cut(s) 890
BaeGI GKGCMC 2 cut(s) 60, 507
BamHI GGATCC 1 cut(s) 350
BanI GGYRCC 2 cut(s) 723, 944
BanII GRGCYC 1 cut(s) 600
BbsI GAAGAC 2 cut(s) 872, 1035
Bbv12I GWGCWC 1 cut(s) 238
BbvCI CCTCAGC 1 cut(s) 828
BbvI GCAGC 4 cut(s) 347, 508, 629, 1036
BccI CCATC 1 cut(s) 222
BciT130I CCWGG 3 cut(s) 220, 254, 639
BclI TGATCA 1 cut(s) 460
BcoDI GTCTC 2 cut(s) 704, 961
BfoI RGCGCY 1 cut(s) 727
BfuAI ACCTGC 2 cut(s) 127, 832
BisI GCNGC 4 cut(s) 336, 522, 618, 1050
BlsI GCNGC 4 cut(s) 337, 523, 619, 1051
Bme1390I CCNGG 3 cut(s) 220, 254, 639
Bme18I GGWCC 1 cut(s) 890
BmgT120I GGNCC 1 cut(s) 890
BmiI GGNNCC 3 cut(s) 352, 725, 946
BmrFI CCNGG 3 cut(s) 220, 254, 639
BmrI ACTGGG 2 cut(s) 879, 1045
BmsI GCATC 2 cut(s) 906, 1036
BmuI ACTGGG 2 cut(s) 879, 1045
BoxI GACNNNNGTC 1 cut(s) 94
BpiI GAAGAC 2 cut(s) 872, 1035
BplI GAGNNNNNCTC 2 cut(s) 324, 356
Bpu10I CCTNAGC 1 cut(s) 828
BpuEI CTTGAG 1 cut(s) 755
BsaHI GRCGYC 1 cut(s) 724
BsaJI CCNNGG 6 cut(s) 195, 218, 219, 252, 638, 933
Bsc4I CCNNNNNNNGG 4 cut(s) 220, 613, 803, 973
Bse1I ACTGG 3 cut(s) 618, 874, 1040
BseBI CCWGG 3 cut(s) 220, 254, 639
BseDI CCNNGG 6 cut(s) 195, 218, 219, 252, 638, 933
BseGI GGATG 4 cut(s) 208, 214, 1045, 1051
BseLI CCNNNNNNNGG 4 cut(s) 220, 613, 803, 973
BseMII CTCAG 3 cut(s) 273, 351, 819
BseNI ACTGG 3 cut(s) 618, 874, 1040
BseRI GAGGAG 1 cut(s) 75
BseSI GKGCMC 2 cut(s) 60, 507
BseXI GCAGC 4 cut(s) 347, 508, 629, 1036
BsgI GTGCAG 1 cut(s) 767
BshFI GGCC 2 cut(s) 265, 932
BshNI GGYRCC 2 cut(s) 723, 944
BsiHKAI GWGCWC 1 cut(s) 238
BsiSI CCGG 1 cut(s) 106
BslFI GGGAC 2 cut(s) 234, 494
BslI CCNNNNNNNGG 4 cut(s) 220, 613, 803, 973
BsmAI GTCTC 2 cut(s) 704, 961
BsmFI GGGAC 2 cut(s) 234, 494
BsmI GAATGC 1 cut(s) 310
BsnI GGCC 2 cut(s) 265, 932
Bsp1286I GDGCHC 4 cut(s) 60, 238, 507, 600
Bsp143I GATC 4 cut(s) 108, 350, 460, 730
BspACI CCGC 1 cut(s) 44
BspANI GGCC 2 cut(s) 265, 932
BspCNI CTCAG 3 cut(s) 274, 352, 820
BspLI GGNNCC 3 cut(s) 352, 725, 946
BspMI ACCTGC 2 cut(s) 127, 832
BspPI GGATC 3 cut(s) 116, 345, 358
BspT107I GGYRCC 2 cut(s) 723, 944
BsrI ACTGG 3 cut(s) 618, 874, 1040
BssECI CCNNGG 6 cut(s) 195, 218, 219, 252, 638, 933
BssMI GATC 4 cut(s) 108, 350, 460, 730
BssNAI GTATAC 2 cut(s) 489, 882
BssNI GRCGYC 1 cut(s) 724
BssT1I CCWWGG 1 cut(s) 195
Bst1107I GTATAC 2 cut(s) 489, 882
Bst2UI CCWGG 3 cut(s) 220, 254, 639
Bst4CI ACNGT 2 cut(s) 261, 779
Bst6I CTCTTC 3 cut(s) 347, 917, 972
BstACI GRCGYC 1 cut(s) 724
BstDEI CTNAG 6 cut(s) 138, 269, 282, 360, 497, 828
BstF5I GGATG 4 cut(s) 208, 214, 1045, 1051
BstH2I RGCGCY 1 cut(s) 727
BstHHI GCGC 1 cut(s) 726
BstKTI GATC 4 cut(s) 111, 353, 463, 733
BstMAI GTCTC 2 cut(s) 704, 961
BstMBI GATC 4 cut(s) 108, 350, 460, 730
BstMWI GCNNNNNNNGC 2 cut(s) 287, 518
BstNI CCWGG 3 cut(s) 220, 254, 639
BstPAI GACNNNNGTC 1 cut(s) 94
BstSCI CCNGG 3 cut(s) 218, 252, 637
BstSLI GKGCMC 2 cut(s) 60, 507
BstV1I GCAGC 4 cut(s) 347, 508, 629, 1036
BstV2I GAAGAC 2 cut(s) 872, 1035
BstX2I RGATCY 1 cut(s) 350
BstXI CCANNNNNNTGG 1 cut(s) 317
BstYI RGATCY 1 cut(s) 350
BstZ17I GTATAC 2 cut(s) 489, 882
BsuRI GGCC 2 cut(s) 265, 932
BtsCI GGATG 4 cut(s) 208, 214, 1045, 1051
BtsIMutI CAGTG 3 cut(s) 266, 296, 1012
BveI ACCTGC 2 cut(s) 127, 832
CfoI GCGC 1 cut(s) 726
Cfr13I GGNCC 1 cut(s) 890
CseI GACGC 1 cut(s) 585
Csp6I GTAC 3 cut(s) 452, 775, 1012
CviAII CATG 6 cut(s) 311, 422, 455, 539, 680, 991
CviQI GTAC 3 cut(s) 452, 775, 1012
DdeI CTNAG 6 cut(s) 138, 269, 282, 360, 497, 828
DinI GGCGCC 1 cut(s) 725
DpnI GATC 4 cut(s) 110, 352, 462, 732
DpnII GATC 4 cut(s) 108, 350, 460, 730
DraI TTTAAA 1 cut(s) 417
DraIII CACNNNGTG 1 cut(s) 500
Eam1104I CTCTTC 3 cut(s) 347, 917, 972
EarI CTCTTC 3 cut(s) 347, 917, 972
Eco130I CCWWGG 1 cut(s) 195
Eco24I GRGCYC 1 cut(s) 600
Eco47I GGWCC 1 cut(s) 890
Eco57I CTGAAG 5 cut(s) 320, 328, 860, 941, 988
EcoRII CCWGG 3 cut(s) 218, 252, 637
EcoT14I CCWWGG 1 cut(s) 195
EcoT22I ATGCAT 1 cut(s) 857
EcoT38I GRGCYC 1 cut(s) 600
EgeI GGCGCC 1 cut(s) 725
EheI GGCGCC 1 cut(s) 725
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 6 cut(s) 314, 425, 458, 542, 683, 994
FaqI GGGAC 2 cut(s) 234, 494
FatI CATG 6 cut(s) 310, 421, 454, 538, 679, 990
FbaI TGATCA 1 cut(s) 460
FblI GTMKAC 3 cut(s) 488, 881, 996
Fnu4HI GCNGC 4 cut(s) 336, 522, 618, 1050
FokI GGATG 4 cut(s) 201, 215, 1052, 1058
FriOI GRGCYC 1 cut(s) 600
Fsp4HI GCNGC 4 cut(s) 336, 522, 618, 1050
GlaI GCGC 1 cut(s) 725
GluI GCNGC 4 cut(s) 336, 522, 618, 1050
HaeII RGCGCY 1 cut(s) 727
HaeIII GGCC 2 cut(s) 265, 932
HapII CCGG 1 cut(s) 106
HgaI GACGC 1 cut(s) 585
HhaI GCGC 1 cut(s) 726
Hin1I GRCGYC 1 cut(s) 724
Hin1II CATG 6 cut(s) 314, 425, 458, 542, 683, 994
Hin6I GCGC 1 cut(s) 724
HinP1I GCGC 1 cut(s) 724
HincII GTYRAC 1 cut(s) 997
HindII GTYRAC 1 cut(s) 997
HinfI GANTC 3 cut(s) 82, 482, 603
HpaII CCGG 1 cut(s) 106
HphI GGTGA 2 cut(s) 527, 719
Hpy166II GTNNAC 5 cut(s) 489, 775, 882, 984, 997
Hpy188I TCNGA 6 cut(s) 113, 361, 438, 474, 575, 583
Hpy188III TCNNGA 3 cut(s) 79, 330, 734
Hpy8I GTNNAC 5 cut(s) 489, 775, 882, 984, 997
Hpy99I CGWCG 1 cut(s) 579
HpyAV CCTTC 5 cut(s) 195, 652, 881, 922, 967
HpyCH4III ACNGT 2 cut(s) 261, 779
HpyCH4IV ACGT 1 cut(s) 986
HpyCH4V TGCA 5 cut(s) 122, 388, 524, 748, 855
HpyF10VI GCNNNNNNNGC 2 cut(s) 287, 518
HpyF3I CTNAG 6 cut(s) 138, 269, 282, 360, 497, 828
HpySE526I ACGT 1 cut(s) 986
Hsp92I GRCGYC 1 cut(s) 724
Hsp92II CATG 6 cut(s) 314, 425, 458, 542, 683, 994
HspAI GCGC 1 cut(s) 724
KasI GGCGCC 1 cut(s) 723
Ksp22I TGATCA 1 cut(s) 460
Kzo9I GATC 4 cut(s) 108, 350, 460, 730
LmnI GCTCC 3 cut(s) 332, 409, 576
Lsp1109I GCAGC 4 cut(s) 347, 508, 629, 1036
LweI GCATC 2 cut(s) 906, 1036
MaeII ACGT 1 cut(s) 986
MaeIII GTNAC 3 cut(s) 67, 96, 832
MalI GATC 4 cut(s) 110, 352, 462, 732
MboI GATC 4 cut(s) 108, 350, 460, 730
MboII GAAGA 8 cut(s) 188, 313, 334, 874, 877, 934, 989, 1040
MfeI CAATTG 1 cut(s) 525
MflI RGATCY 1 cut(s) 350
MhlI GDGCHC 4 cut(s) 60, 238, 507, 600
MluCI AATT 2 cut(s) 324, 525
Mly113I GGCGCC 1 cut(s) 724
MlyI GAGTC 2 cut(s) 76, 476
MmeI TCCRAC 2 cut(s) 378, 598
Mph1103I ATGCAT 1 cut(s) 857
MroXI GAANNNNTTC 1 cut(s) 325
MseI TTAA 5 cut(s) 8, 416, 696, 816, 849
MslI CAYNNNNRTG 3 cut(s) 315, 684, 1005
MspI CCGG 1 cut(s) 106
MspR9I CCNGG 3 cut(s) 220, 254, 639
MunI CAATTG 1 cut(s) 525
Mva1269I GAATGC 1 cut(s) 310
MvaI CCWGG 3 cut(s) 220, 254, 639
MwoI GCNNNNNNNGC 2 cut(s) 287, 518
NarI GGCGCC 1 cut(s) 724
NdeII GATC 4 cut(s) 108, 350, 460, 730
NlaIII CATG 6 cut(s) 314, 425, 458, 542, 683, 994
NlaIV GGNNCC 3 cut(s) 352, 725, 946
NmeAIII GCCGAG 1 cut(s) 958
NmuCI GTSAC 1 cut(s) 96
NsiI ATGCAT 1 cut(s) 857
OliI CACNNNNGTG 1 cut(s) 1005
PasI CCCWGGG 1 cut(s) 219
PctI GAATGC 1 cut(s) 310
PdmI GAANNNNTTC 1 cut(s) 325
PfeI GAWTC 1 cut(s) 603
PflMI CCANNNNNTGG 1 cut(s) 613
PkrI GCNGC 4 cut(s) 337, 523, 619, 1051
PleI GAGTC 2 cut(s) 76, 476
PluTI GGCGCC 1 cut(s) 727
PpsI GAGTC 2 cut(s) 76, 476
PshAI GACNNNNGTC 1 cut(s) 94
PshBI ATTAAT 1 cut(s) 8
Psp6I CCWGG 3 cut(s) 218, 252, 637
PspGI CCWGG 3 cut(s) 218, 252, 637
PspN4I GGNNCC 3 cut(s) 352, 725, 946
PspPI GGNCC 1 cut(s) 890
PsuI RGATCY 1 cut(s) 350
RsaI GTAC 3 cut(s) 453, 776, 1013
RsaNI GTAC 3 cut(s) 452, 775, 1012
RseI CAYNNNNRTG 3 cut(s) 315, 684, 1005
SalI GTCGAC 1 cut(s) 995
SaqAI TTAA 5 cut(s) 8, 416, 696, 816, 849
SatI GCNGC 4 cut(s) 336, 522, 618, 1050
Sau3AI GATC 4 cut(s) 108, 350, 460, 730
Sau96I GGNCC 1 cut(s) 890
SchI GAGTC 2 cut(s) 76, 476
ScrFI CCNGG 3 cut(s) 220, 254, 639
SduI GDGCHC 4 cut(s) 60, 238, 507, 600
SfaNI GCATC 2 cut(s) 906, 1036
SfoI GGCGCC 1 cut(s) 725
SinI GGWCC 1 cut(s) 890
SmiI ATTTAAAT 1 cut(s) 417
SmiMI CAYNNNNRTG 3 cut(s) 315, 684, 1005
SmlI CTYRAG 1 cut(s) 734
SmoI CTYRAG 1 cut(s) 734
Sse9I AATT 2 cut(s) 324, 525
SsiI CCGC 1 cut(s) 44
SspDI GGCGCC 1 cut(s) 723
StyD4I CCNGG 3 cut(s) 218, 252, 637
StyI CCWWGG 1 cut(s) 195
SwaI ATTTAAAT 1 cut(s) 417
TaaI ACNGT 2 cut(s) 261, 779
TaiI ACGT 1 cut(s) 989
TaqI TCGA 2 cut(s) 88, 996
TasI AATT 2 cut(s) 324, 525
TatI WGTACW 2 cut(s) 451, 1011
TfiI GAWTC 1 cut(s) 603
Tru1I TTAA 5 cut(s) 8, 416, 696, 816, 849
Tru9I TTAA 5 cut(s) 8, 416, 696, 816, 849
TscAI CASTG 3 cut(s) 266, 303, 1012
TseFI GTSAC 1 cut(s) 96
TseI GCWGC 4 cut(s) 335, 521, 617, 1049
Tsp45I GTSAC 1 cut(s) 96
TspDTI ATGAA 3 cut(s) 189, 979, 1041
TspRI CASTG 3 cut(s) 266, 303, 1012
Van91I CCANNNNNTGG 1 cut(s) 613
VpaK11BI GGWCC 1 cut(s) 890
VspI ATTAAT 1 cut(s) 8
XapI RAATTY 1 cut(s) 324
XmiI GTMKAC 3 cut(s) 488, 881, 996
XmnI GAANNNNTTC 1 cut(s) 325
Zsp2I ATGCAT 1 cut(s) 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.