RchiOBHm_Chr7g0187981

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0007827
Physical Location & Seq
Forward (+)
7692210 .. 7698105
5896 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16783

Sequence Viewer

Length: 3042 bp
ATGTTTGGTTCTACGAGCCCTTTTGGGCAGTCATCTAACAGCCCATTTGGGTCCCAGTCGGTGTTTGGGCAAAGCAGCAACACAAGTAACAATCCTTTTGCTCCCCAGCCCTTTGGTAGCACCACTCCATTTGGTGCCCAGACAGGGAGTTCCCTATTTGGGGGAACTTCAACTGGCGTATTTGGTCAAACCCAATCCTCACCTTTTGGTGCTTCATCCTCACCAGCTTTCGGACAGCAGAGTTCTCCATTTGGAGCATCTTCTACTCCAGCATTTGGTGCACCATCATCCACTCAAACAAGTCCATTTGGTGGAGCATCTGGTACGTCTGCTTTTGGTCAGAAGCCCGCTTTTGGAGCATTTGGGTCGAGTCCTGCTCAAACAAGTCCATTTGGAAGCACAGCTCAACCATCACAACCAGCATTTGGAAGCAATATGTTTGGTGCCACCTCTACAGCATTTGGCGCAAGTCAGCCTGCATTTGGCACTAATACTGCCCCAGCCTTTGGTTCAACGAATGCCACAGGCTTTGGTGGCCAGAGCACCCCTGGTTTTGGTGGCCAAGGCACTCCAGCCTTTGGGGCCACAAGCGCTTCACCTTTTGGTAGTACAAGTACTCCGGCGTTTGGTGCTCCAAGTACTCCTACCTTTGGCTCAACACCAAGTCCTACATTTGGAAGCACAGGATCTGCATTTGGGACAACAAGTTCCAACTTGTTTGGATCAGGGGCAGCATTTGGGGCTTCAACCACCCCAGCTTTTGGTCAATCTAGCTCAGCTTTTGGTACTACAACAAGTGCTCCTGCTTTTGGTCAATCAAGTTCAGGTTTTGGCTTTTCAACAAGTGCTCCTGCATTTGGCCAATCAAGTTCAACCTTTGGTAGCACCCAATTTGCGGCTTCATCTCCTTTCGGAGCGCAGAGTTCGCCATCTCCTTTCGGAGGGCAGAGTTCGCCATTTGGGGCTCAGTCAACAACACCAACACTTGGAAACACTGCCTTTGGACAGCCAGCTTTTGGGGGCCAACGGGGTGGAAGTAGAGTGGCTGCTTACACAGGCACATCTGAACCGGATAGTAATGGAATGGGGAAATTGGAGTCAATATCAGCAATGCCAGCCTATAAAGAAAAAAGTCACGAGGAATTGAGATGGGAGGATTACCAATTAGGGGATAAGGGTGGACCGTCTCCTGCTGGTGCGGGTAGCTTTGGTGTATCAACTGTTCAGACAAGTACTTTGAATCCTAATCCTGCACCATCGTTTTCTCAAACATCTTCAAGTCCTTTTAATACCTCAACCTCATCTGGTTTATTTGCCCAAAAACCCTCATCCTTTCCTTCTACTGGTTTTGGTGTTACTTCATCTTCACCATTTAGTTCAACTTCACCGTTTAGTTCTTCATCAACTCAAACCAATTTTTTTACACCTGCATCATCTGCGTCACCATTTGGCCAAACGTCGTCTCCAGCTATTTTTAGTTCACCATCTTCCTTTTCATTCTCTACCCCAGCTACATCATCCACTCCCTCATTTAATTTTCCCACTCCATCAAACCCACAGACACAGTTTGGTCAAACAGGCACTACCTCCTTTGGGCTGAATCCATCTACCTTTGGTTCAAACTTGTTCAATAGTACTTCCAGTTTGCAGAGCAGTTCATTGGGCACTACCAGCAACCAACTGGGTCTTACTCAAGCAGCTCCTGCTTTTCCTACTTTCCAGACATCTCAGCCTCTTCAGTCTAGTCTTTTTGGCTTCAGCAACACCAATGCCTTCAACAACACCAACACCTTTAATCAACCCCAGCCAGGCAACACAGGTGGTTTTGGTGGTTTAGCAGGCATTTCTGGTCAGAACAACTTTGGACAATCGTATGTCTGTCACTCAAGGCTCTGCAGCTGTACAACAACCAGTACCTGCTACAAATCCATTTGGAACGCTCCCCGCGATGCCGCAGATGTCAATTGGTCGTGGGGAACTGCACCATCAATTCAATATGGAATTTCAAGCATGCCTGTTGCGGATAAACCTGCGCCCGTTAGGGTAACATCCATCCTGACTCCTCGACACCTGTCACAACGCCGGATCAGATTACCTGCAAGAAAATATAATCCTAAGAATGATAACCCAAAGGCTTTTTTTAGTGATGATGAAGAAACACCCTCTACACCCAAGGGGGATGTTGTTTTCCATCCCAGGGAAAACCCAAGAGCACTTGTCATTCGTCCCCAGGAACAGTGGCCTCTAAGAGCGAGTGCTGAGAAAGCAACAGCACTGAAGAATGCCCATGAGAATGGAAAAATTTCGGGAGCAGCACTCTTCGGGGGATCCAACTCTGAGGATAAAGACGAACCAGAAACTCTGCAAGAAAATGGTGCTGTCAAGGAGCATTTAAATCATGTCAAGGCTAATCAGAAACCTAATGGAGTACATGATGATCACTCTATTCAGAAAGGGGACTCGTATACAACACTAAGTGGGCACAGAGCTGGTGAGGCTGCAATTGTGTATGAGCATGGTGCTGACATTGAGGCACAAATGCCGAAGCTCCGACGCTCTGATTACTACACAGAGCCCCGAATCCAAGAACTGGCGGCAAAGGAAAGGGCAGAGCCAGGGTTCTGCTGTCGTGTGAAGGACTTTGTGGTTGGGCGACATGGTTGTGGTAGCATTAAGTTCTTGGGTGAGACAGATGTAAGGCGCCTTGATCTTGAGGCTCTGGTGCAGTTCAATAATAAGGAGGTAATCGTGTACCGTGATGAGAACAAGAAGCCTCCTGTCGGGCAAGGGCTTAATAAACCTGCTGAGGTTACACTTCTCAACATTAAATGCATTGAGAAGAAGACTGGGCTTCAGTATACAGAAGGACCAAAAGTTGAGAAATACAAGGAGATGCTGAAGAGGAAGGCCGAGGAACAAGGTGCCAAGTTTGTCTCCTTTGACCCAAAGAAGGAAGAGTGGACGTTCATGGTCGACCACTTCAGTGAGTACAAGTTGAGAGATGAAGACGACTGGGATGTGGATGCTGCCCAAGATTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000972 GO:0000973 GO:0003674 GO:0003676 GO:0003682 GO:0003712 GO:0003713 GO:0003723 GO:0003729 GO:0005048 GO:0005198 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008139 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016032 GO:0016043 GO:0016234 GO:0016604 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0022607 GO:0031080 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033120 GO:0033218 GO:0033365 GO:0034397 GO:0034398 GO:0034399 GO:0034504 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0042277 GO:0042405 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044614 GO:0044615 GO:0045184 GO:0045935 GO:0046483 GO:0046907 GO:0046931 GO:0048024 GO:0048026 GO:0048518 GO:0048522 GO:0048583 GO:0050000 GO:0050657 GO:0050658 GO:0050684 GO:0050685 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051254 GO:0051276 GO:0051292 GO:0051640 GO:0051641 GO:0051649 GO:0051704 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1902446 GO:1902680 GO:1903311 GO:1903313 GO:1903506 GO:1903508 GO:1990841 GO:1990904 GO:2000030 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03013 ko05164 map03013 map05164
Pfam Domains
Protein Families
Nucleoporin2

Protein Analysis

1013

Amino Acids

105.34

Weight (kDa)

6.9

Isoelectric Point (pI)

56.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nup98_GLEBS PF21240 368 - 387 3.4e-06 Nup98, Gle2-binding sequence
Nucleoporin2 PF04096 853 - 999 2.7e-44 Nup98-96 autopeptidase S59
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1435
Acc36I ACCTGC 5 cut(s) 1435, 1925, 2038, 2104, 2809
AccB1I GGYRCC 4 cut(s) 134, 443, 2700, 2921
AccB7I CCANNNNNTGG 9 cut(s) 275, 311, 425, 506, 578, 761, 986, 1016, 2590
AccI GTMKAC 3 cut(s) 2465, 2858, 2973
AccII CGCG 1 cut(s) 1947
AciI CCGC 7 cut(s) 348, 896, 1199, 1945, 1953, 2021, 2594
AclWI GGATC 5 cut(s) 694, 730, 2093, 2322, 2335
AcoI YGGCCR 4 cut(s) 535, 559, 859, 1450
AcsI RAATTY 2 cut(s) 2001, 2301
AcuI CTGAAG 6 cut(s) 1721, 1741, 2297, 2837, 2918, 2965
AcyI GRCGYC 1 cut(s) 2701
AdeI CACNNNGTG 1 cut(s) 2477
AfeI AGCGCT 1 cut(s) 592
AjnI CCWGG 5 cut(s) 547, 1807, 2195, 2229, 2614
AleI CACNNNNGTG 1 cut(s) 2982
AloI GAACNNNNNNTCC 2 cut(s) 691, 723
Alw21I GWGCWC 6 cut(s) 283, 545, 634, 802, 850, 2215
Alw26I GTCTC 4 cut(s) 1191, 1467, 2681, 2938
Alw44I GTGCAC 1 cut(s) 279
AlwI GGATC 5 cut(s) 694, 730, 2093, 2322, 2335
AlwNI CAGNNNCTG 3 cut(s) 689, 1703, 1917
Aor51HI AGCGCT 1 cut(s) 592
AoxI GGCC 8 cut(s) 535, 559, 582, 859, 1021, 1450, 2240, 2907
ApaLI GTGCAC 1 cut(s) 279
ApeKI GCWGC 8 cut(s) 75, 731, 1046, 1697, 1896, 2312, 2498, 3026
ApoI RAATTY 2 cut(s) 2001, 2301
ArsI GACNNNNNNTTYG 2 cut(s) 1219, 1251
Asp700I GAANNNNTTC 1 cut(s) 2302
AspLEI GCGC 5 cut(s) 467, 593, 919, 2035, 2703
AspS9I GGNCC 5 cut(s) 51, 582, 1021, 1181, 2867
AsuHPI GGTGA 9 cut(s) 192, 213, 588, 1359, 1377, 1434, 1473, 2504, 2696
AvaII GGWCC 3 cut(s) 51, 1181, 2867
BaeGI GKGCMC 4 cut(s) 139, 283, 1667, 2484
BalI TGGCCA 4 cut(s) 537, 561, 861, 1452
BamHI GGATCC 1 cut(s) 2327
BanI GGYRCC 4 cut(s) 134, 443, 2700, 2921
BanII GRGCYC 3 cut(s) 20, 967, 2577
BauI CACGAG 1 cut(s) 1136
BbsI GAAGAC 2 cut(s) 2849, 3012
Bbv12I GWGCWC 6 cut(s) 283, 545, 634, 802, 850, 2215
BbvCI CCTCAGC 1 cut(s) 2805
BbvI GCAGC 8 cut(s) 87, 743, 1033, 1709, 1908, 2324, 2485, 3013
BcgI CGANNNNNNTGC 2 cut(s) 348, 382
BciT130I CCWGG 5 cut(s) 549, 1809, 2197, 2231, 2616
BclI TGATCA 1 cut(s) 2437
BcoDI GTCTC 4 cut(s) 1191, 1467, 2681, 2938
BfaI CTAG 2 cut(s) 771, 1743
BfmI CTRYAG 2 cut(s) 453, 1894
BfoI RGCGCY 2 cut(s) 594, 2704
BfuAI ACCTGC 5 cut(s) 1435, 1925, 2038, 2104, 2809
BglI GCCNNNNNGGC 1 cut(s) 581
BlpI GCTNAGC 1 cut(s) 775
BmcAI AGTACT 4 cut(s) 616, 640, 1234, 1636
Bme1390I CCNGG 5 cut(s) 549, 1809, 2197, 2231, 2616
Bme18I GGWCC 3 cut(s) 51, 1181, 2867
BmgT120I GGNCC 5 cut(s) 51, 582, 1021, 1181, 2867
BmiI GGNNCC 9 cut(s) 52, 53, 136, 445, 583, 1022, 2329, 2702, 2923
BmrFI CCNGG 5 cut(s) 549, 1809, 2197, 2231, 2616
BmrI ACTGGG 4 cut(s) 49, 1691, 2856, 3022
BmsI GCATC 6 cut(s) 266, 326, 1439, 1939, 2883, 3013
BmuI ACTGGG 4 cut(s) 49, 1691, 2856, 3022
BoxI GACNNNNGTC 1 cut(s) 2071
BpiI GAAGAC 2 cut(s) 2849, 3012
BplI GAGNNNNNCTC 4 cut(s) 361, 393, 2301, 2333
BpmI CTGGAG 3 cut(s) 252, 555, 1449
Bpu10I CCTNAGC 1 cut(s) 2805
Bpu1102I GCTNAGC 1 cut(s) 775
BpuEI CTTGAG 3 cut(s) 1677, 1870, 2732
BsaHI GRCGYC 1 cut(s) 2701
BsaJI CCNNGG 8 cut(s) 547, 562, 2172, 2195, 2196, 2229, 2615, 2910
BsaWI WCCGGW 1 cut(s) 1069
BsaXI ACNNNNNCTCC 8 cut(s) 601, 631, 784, 814, 832, 862, 1447, 1477
Bse1I ACTGG 9 cut(s) 55, 178, 1348, 1641, 1686, 1911, 2595, 2851, 3017
Bse3DI GCAATG 1 cut(s) 1116
BseBI CCWGG 5 cut(s) 549, 1809, 2197, 2231, 2616
BseDI CCNNGG 8 cut(s) 547, 562, 2172, 2195, 2196, 2229, 2615, 2910
BseMI GCAATG 1 cut(s) 1116
BseMII CTCAG 6 cut(s) 789, 980, 1742, 2250, 2328, 2796
BseNI ACTGG 9 cut(s) 55, 178, 1348, 1641, 1686, 1911, 2595, 2851, 3017
BseRI GAGGAG 1 cut(s) 2052
BseSI GKGCMC 4 cut(s) 139, 283, 1667, 2484
BseXI GCAGC 8 cut(s) 87, 743, 1033, 1709, 1908, 2324, 2485, 3013
BseYI CCCAGC 5 cut(s) 105, 499, 754, 1507, 1803
BsgI GTGCAG 3 cut(s) 1236, 1965, 2744
Bsh1236I CGCG 1 cut(s) 1947
BshFI GGCC 8 cut(s) 537, 561, 584, 861, 1023, 1452, 2242, 2909
BshNI GGYRCC 4 cut(s) 134, 443, 2700, 2921
BsiHKAI GWGCWC 6 cut(s) 283, 545, 634, 802, 850, 2215
BsiSI CCGG 3 cut(s) 620, 1070, 2083
BslFI GGGAC 4 cut(s) 37, 712, 2211, 2471
BsmAI GTCTC 4 cut(s) 1191, 1467, 2681, 2938
BsmBI CGTCTC 2 cut(s) 1191, 1467
BsmFI GGGAC 4 cut(s) 37, 712, 2211, 2471
BsmI GAATGC 2 cut(s) 523, 2287
BsnI GGCC 8 cut(s) 537, 561, 584, 861, 1023, 1452, 2242, 2909
Bsp1407I TGTACA 1 cut(s) 1901
Bsp143I GATC 6 cut(s) 686, 722, 2085, 2327, 2437, 2707
Bsp1720I GCTNAGC 1 cut(s) 775
BspACI CCGC 7 cut(s) 348, 896, 1199, 1945, 1953, 2021, 2594
BspANI GGCC 8 cut(s) 537, 561, 584, 861, 1023, 1452, 2242, 2909
BspCNI CTCAG 6 cut(s) 788, 979, 1741, 2251, 2329, 2797
BspFNI CGCG 1 cut(s) 1947
BspLI GGNNCC 9 cut(s) 52, 53, 136, 445, 583, 1022, 2329, 2702, 2923
BspMAI CTGCAG 1 cut(s) 1898
BspMI ACCTGC 5 cut(s) 1435, 1925, 2038, 2104, 2809
BspPI GGATC 5 cut(s) 694, 730, 2093, 2322, 2335
BspT107I GGYRCC 4 cut(s) 134, 443, 2700, 2921
BsrDI GCAATG 1 cut(s) 1116
BsrGI TGTACA 1 cut(s) 1901
BsrI ACTGG 9 cut(s) 55, 178, 1348, 1641, 1686, 1911, 2595, 2851, 3017
BssECI CCNNGG 8 cut(s) 547, 562, 2172, 2195, 2196, 2229, 2615, 2910
BssMI GATC 6 cut(s) 686, 722, 2085, 2327, 2437, 2707
BssNAI GTATAC 2 cut(s) 2466, 2859
BssNI GRCGYC 1 cut(s) 2701
BssSI CACGAG 1 cut(s) 1136
BssT1I CCWWGG 2 cut(s) 562, 2172
Bst1107I GTATAC 2 cut(s) 2466, 2859
Bst2BI CACGAG 1 cut(s) 1136
Bst2UI CCWGG 5 cut(s) 549, 1809, 2197, 2231, 2616
Bst4CI ACNGT 6 cut(s) 1185, 1222, 1389, 1566, 2238, 2756
Bst6I CTCTTC 4 cut(s) 1740, 2324, 2894, 2949
BstACI GRCGYC 1 cut(s) 2701
BstAPI GCANNNNNTGC 3 cut(s) 278, 1436, 1703
BstAUI TGTACA 1 cut(s) 1901
BstC8I GCNNGC 6 cut(s) 348, 477, 1011, 1116, 1840, 2012
BstDEI CTNAG 9 cut(s) 775, 966, 1728, 2115, 2246, 2259, 2337, 2474, 2805
BstENI CCTNNNNNAGG 1 cut(s) 939
BstFNI CGCG 1 cut(s) 1947
BstH2I RGCGCY 2 cut(s) 594, 2704
BstHHI GCGC 5 cut(s) 467, 593, 919, 2035, 2703
BstKTI GATC 6 cut(s) 689, 725, 2088, 2330, 2440, 2710
BstMAI GTCTC 4 cut(s) 1191, 1467, 2681, 2938
BstMBI GATC 6 cut(s) 686, 722, 2085, 2327, 2437, 2707
BstNI CCWGG 5 cut(s) 549, 1809, 2197, 2231, 2616
BstNSI RCATGY 1 cut(s) 2014
BstPAI GACNNNNGTC 1 cut(s) 2071
BstSCI CCNGG 5 cut(s) 547, 1807, 2195, 2229, 2614
BstSFI CTRYAG 2 cut(s) 453, 1894
BstSLI GKGCMC 4 cut(s) 139, 283, 1667, 2484
BstUI CGCG 1 cut(s) 1947
BstV1I GCAGC 8 cut(s) 87, 743, 1033, 1709, 1908, 2324, 2485, 3013
BstV2I GAAGAC 2 cut(s) 2849, 3012
BstX2I RGATCY 2 cut(s) 686, 2327
BstXI CCANNNNNNTGG 3 cut(s) 113, 1031, 2294
BstYI RGATCY 2 cut(s) 686, 2327
BstZ17I GTATAC 2 cut(s) 2466, 2859
BsuRI GGCC 8 cut(s) 537, 561, 584, 861, 1023, 1452, 2242, 2909
BtgZI GCGATG 1 cut(s) 1962
BtsI GCAGTG 1 cut(s) 993
BtsIMutI CAGTG 4 cut(s) 993, 2243, 2273, 2989
BveI ACCTGC 5 cut(s) 1435, 1925, 2038, 2104, 2809
Cac8I GCNNGC 6 cut(s) 348, 477, 1011, 1116, 1840, 2012
CaiI CAGNNNCTG 3 cut(s) 689, 1703, 1917
CfoI GCGC 5 cut(s) 467, 593, 919, 2035, 2703
Cfr13I GGNCC 5 cut(s) 51, 582, 1021, 1181, 2867
CseI GACGC 2 cut(s) 1428, 2562
CspCI CAANNNNNGTGG 6 cut(s) 112, 147, 511, 546, 1801, 1836
CviAII CATG 7 cut(s) 2011, 2288, 2399, 2432, 2516, 2657, 2968
DdeI CTNAG 9 cut(s) 775, 966, 1728, 2115, 2246, 2259, 2337, 2474, 2805
DinI GGCGCC 1 cut(s) 2702
DpnI GATC 6 cut(s) 688, 724, 2087, 2329, 2439, 2709
DpnII GATC 6 cut(s) 686, 722, 2085, 2327, 2437, 2707
DraI TTTAAA 1 cut(s) 2394
DraIII CACNNNGTG 1 cut(s) 2477
EaeI YGGCCR 4 cut(s) 535, 559, 859, 1450
Eam1104I CTCTTC 4 cut(s) 1740, 2324, 2894, 2949
EarI CTCTTC 4 cut(s) 1740, 2324, 2894, 2949
Eco130I CCWWGG 2 cut(s) 562, 2172
Eco24I GRGCYC 3 cut(s) 20, 967, 2577
Eco47I GGWCC 3 cut(s) 51, 1181, 2867
Eco47III AGCGCT 1 cut(s) 592
Eco57I CTGAAG 6 cut(s) 1721, 1741, 2297, 2837, 2918, 2965
EcoNI CCTNNNNNAGG 1 cut(s) 939
EcoO109I RGGNCCY 1 cut(s) 51
EcoRII CCWGG 5 cut(s) 547, 1807, 2195, 2229, 2614
EcoT14I CCWWGG 2 cut(s) 562, 2172
EcoT22I ATGCAT 1 cut(s) 2834
EcoT38I GRGCYC 3 cut(s) 20, 967, 2577
EgeI GGCGCC 1 cut(s) 2702
EheI GGCGCC 1 cut(s) 2702
ErhI CCWWGG 2 cut(s) 562, 2172
Esp3I CGTCTC 2 cut(s) 1191, 1467
FaeI CATG 7 cut(s) 2014, 2291, 2402, 2435, 2519, 2660, 2971
FaqI GGGAC 4 cut(s) 37, 712, 2211, 2471
FatI CATG 7 cut(s) 2010, 2287, 2398, 2431, 2515, 2656, 2967
FauI CCCGC 3 cut(s) 355, 1192, 1952
FbaI TGATCA 1 cut(s) 2437
FblI GTMKAC 3 cut(s) 2465, 2858, 2973
FriOI GRGCYC 3 cut(s) 20, 967, 2577
FspBI CTAG 2 cut(s) 771, 1743
GlaI GCGC 5 cut(s) 466, 592, 918, 2034, 2702
GsaI CCCAGC 5 cut(s) 109, 503, 758, 1511, 1807
GsuI CTGGAG 3 cut(s) 252, 555, 1449
HaeII RGCGCY 2 cut(s) 594, 2704
HaeIII GGCC 8 cut(s) 537, 561, 584, 861, 1023, 1452, 2242, 2909
HapII CCGG 3 cut(s) 620, 1070, 2083
HgaI GACGC 2 cut(s) 1428, 2562
HhaI GCGC 5 cut(s) 467, 593, 919, 2035, 2703
Hin1I GRCGYC 1 cut(s) 2701
Hin1II CATG 7 cut(s) 2014, 2291, 2402, 2435, 2519, 2660, 2971
Hin6I GCGC 5 cut(s) 465, 591, 917, 2033, 2701
HinP1I GCGC 5 cut(s) 465, 591, 917, 2033, 2701
HincII GTYRAC 2 cut(s) 972, 2974
HindII GTYRAC 2 cut(s) 972, 2974
HinfI GANTC 7 cut(s) 370, 1097, 1240, 1600, 2059, 2459, 2580
HpaII CCGG 3 cut(s) 620, 1070, 2083
HphI GGTGA 9 cut(s) 192, 213, 588, 1359, 1377, 1434, 1473, 2504, 2696
Hpy166II GTNNAC 9 cut(s) 281, 972, 1181, 1481, 2466, 2752, 2859, 2961, 2974
Hpy188III TCNNGA 5 cut(s) 1136, 1720, 2056, 2307, 2711
Hpy8I GTNNAC 9 cut(s) 281, 972, 1181, 1481, 2466, 2752, 2859, 2961, 2974
Hpy99I CGWCG 2 cut(s) 1462, 2556
HpyAV CCTTC 6 cut(s) 1347, 1783, 2629, 2858, 2899, 2944
HpyCH4III ACNGT 6 cut(s) 1185, 1222, 1389, 1566, 2238, 2756
HpyCH4IV ACGT 3 cut(s) 326, 1457, 2963
HpyF3I CTNAG 9 cut(s) 775, 966, 1728, 2115, 2246, 2259, 2337, 2474, 2805
HpySE526I ACGT 3 cut(s) 326, 1457, 2963
Hsp92I GRCGYC 1 cut(s) 2701
Hsp92II CATG 7 cut(s) 2014, 2291, 2402, 2435, 2519, 2660, 2971
HspAI GCGC 5 cut(s) 465, 591, 917, 2033, 2701
KasI GGCGCC 1 cut(s) 2700
KflI GGGWCCC 1 cut(s) 51
Ksp22I TGATCA 1 cut(s) 2437
Kzo9I GATC 6 cut(s) 686, 722, 2085, 2327, 2437, 2707
Lsp1109I GCAGC 8 cut(s) 87, 743, 1033, 1709, 1908, 2324, 2485, 3013
LweI GCATC 6 cut(s) 266, 326, 1439, 1939, 2883, 3013
MaeI CTAG 2 cut(s) 771, 1743
MaeII ACGT 3 cut(s) 326, 1457, 2963
MaeIII GTNAC 8 cut(s) 86, 1133, 1354, 1440, 1880, 2044, 2073, 2809
MalI GATC 6 cut(s) 688, 724, 2087, 2329, 2439, 2709
MboI GATC 6 cut(s) 686, 722, 2085, 2327, 2437, 2707
MfeI CAATTG 2 cut(s) 1963, 2502
MflI RGATCY 2 cut(s) 686, 2327
MlsI TGGCCA 4 cut(s) 537, 561, 861, 1452
MluNI TGGCCA 4 cut(s) 537, 561, 861, 1452
Mly113I GGCGCC 1 cut(s) 2701
MlyI GAGTC 4 cut(s) 379, 1106, 2053, 2453
MmeI TCCRAC 3 cut(s) 735, 2355, 2575
Mox20I TGGCCA 4 cut(s) 537, 561, 861, 1452
Mph1103I ATGCAT 1 cut(s) 2834
MroXI GAANNNNTTC 1 cut(s) 2302
MscI TGGCCA 4 cut(s) 537, 561, 861, 1452
MseI TTAA 7 cut(s) 1287, 1533, 1794, 2393, 2673, 2793, 2826
MslI CAYNNNNRTG 3 cut(s) 2292, 2661, 2982
Msp20I TGGCCA 4 cut(s) 537, 561, 861, 1452
MspA1I CMGCKG 1 cut(s) 1899
MspI CCGG 3 cut(s) 620, 1070, 2083
MspR9I CCNGG 5 cut(s) 549, 1809, 2197, 2231, 2616
MunI CAATTG 2 cut(s) 1963, 2502
Mva1269I GAATGC 2 cut(s) 523, 2287
MvaI CCWGG 5 cut(s) 549, 1809, 2197, 2231, 2616
MvnI CGCG 1 cut(s) 1947
NarI GGCGCC 1 cut(s) 2701
NdeII GATC 6 cut(s) 686, 722, 2085, 2327, 2437, 2707
NlaIII CATG 7 cut(s) 2014, 2291, 2402, 2435, 2519, 2660, 2971
NlaIV GGNNCC 9 cut(s) 52, 53, 136, 445, 583, 1022, 2329, 2702, 2923
NmeAIII GCCGAG 1 cut(s) 2935
NmuCI GTSAC 4 cut(s) 1133, 1440, 1880, 2073
NsiI ATGCAT 1 cut(s) 2834
NspI RCATGY 1 cut(s) 2014
OliI CACNNNNGTG 1 cut(s) 2982
PaeI GCATGC 1 cut(s) 2014
PaqCI CACCTGC 1 cut(s) 1435
PasI CCCWGGG 1 cut(s) 2196
PcsI WCGNNNNNNNCGW 1 cut(s) 1944
PctI GAATGC 2 cut(s) 523, 2287
PdmI GAANNNNTTC 1 cut(s) 2302
PfeI GAWTC 3 cut(s) 1240, 1600, 2580
PflMI CCANNNNNTGG 9 cut(s) 275, 311, 425, 506, 578, 761, 986, 1016, 2590
PleI GAGTC 4 cut(s) 378, 1105, 2053, 2453
PluTI GGCGCC 1 cut(s) 2704
PpsI GAGTC 4 cut(s) 378, 1105, 2053, 2453
PpuMI RGGWCCY 1 cut(s) 51
PshAI GACNNNNGTC 1 cut(s) 2071
Psp5II RGGWCCY 1 cut(s) 51
Psp6I CCWGG 5 cut(s) 547, 1807, 2195, 2229, 2614
PspFI CCCAGC 5 cut(s) 105, 499, 754, 1507, 1803
PspGI CCWGG 5 cut(s) 547, 1807, 2195, 2229, 2614
PspN4I GGNNCC 9 cut(s) 52, 53, 136, 445, 583, 1022, 2329, 2702, 2923
PspPI GGNCC 5 cut(s) 51, 582, 1021, 1181, 2867
PspPPI RGGWCCY 1 cut(s) 51
PsrI GAACNNNNNNTAC 2 cut(s) 1206, 1238
PstI CTGCAG 1 cut(s) 1898
PstNI CAGNNNCTG 3 cut(s) 689, 1703, 1917
PsuI RGATCY 2 cut(s) 686, 2327
PvuII CAGCTG 1 cut(s) 1899
RseI CAYNNNNRTG 3 cut(s) 2292, 2661, 2982
SalI GTCGAC 1 cut(s) 2972
SaqAI TTAA 7 cut(s) 1287, 1533, 1794, 2393, 2673, 2793, 2826
Sau3AI GATC 6 cut(s) 686, 722, 2085, 2327, 2437, 2707
Sau96I GGNCC 5 cut(s) 51, 582, 1021, 1181, 2867
ScaI AGTACT 4 cut(s) 616, 640, 1234, 1636
SchI GAGTC 4 cut(s) 379, 1106, 2053, 2453
ScrFI CCNGG 5 cut(s) 549, 1809, 2197, 2231, 2616
SfaNI GCATC 6 cut(s) 266, 326, 1439, 1939, 2883, 3013
SfcI CTRYAG 2 cut(s) 453, 1894
SfoI GGCGCC 1 cut(s) 2702
SinI GGWCC 3 cut(s) 51, 1181, 2867
SmiI ATTTAAAT 1 cut(s) 2394
SmiMI CAYNNNNRTG 3 cut(s) 2292, 2661, 2982
SmlI CTYRAG 3 cut(s) 1692, 1885, 2711
SmoI CTYRAG 3 cut(s) 1692, 1885, 2711
SphI GCATGC 1 cut(s) 2014
SsiI CCGC 7 cut(s) 348, 896, 1199, 1945, 1953, 2021, 2594
SspDI GGCGCC 1 cut(s) 2700
SspMI CTAG 2 cut(s) 771, 1743
StyD4I CCNGG 5 cut(s) 547, 1807, 2195, 2229, 2614
StyI CCWWGG 2 cut(s) 562, 2172
SwaI ATTTAAAT 1 cut(s) 2394
TaaI ACNGT 6 cut(s) 1185, 1222, 1389, 1566, 2238, 2756
TaiI ACGT 3 cut(s) 329, 1460, 2966
TaqI TCGA 3 cut(s) 368, 2065, 2973
TatI WGTACW 8 cut(s) 608, 614, 638, 1232, 1634, 1901, 2428, 2988
TauI GCSGC 3 cut(s) 899, 1955, 2597
TfiI GAWTC 3 cut(s) 1240, 1600, 2580
Tru1I TTAA 7 cut(s) 1287, 1533, 1794, 2393, 2673, 2793, 2826
Tru9I TTAA 7 cut(s) 1287, 1533, 1794, 2393, 2673, 2793, 2826
TscAI CASTG 4 cut(s) 1000, 2243, 2280, 2989
TseFI GTSAC 4 cut(s) 1133, 1440, 1880, 2073
TseI GCWGC 8 cut(s) 75, 731, 1046, 1697, 1896, 2312, 2498, 3026
Tsp45I GTSAC 4 cut(s) 1133, 1440, 1880, 2073
TspDTI ATGAA 9 cut(s) 204, 891, 1350, 1389, 1485, 1647, 2166, 2956, 3018
TspRI CASTG 4 cut(s) 1000, 2243, 2280, 2989
Van91I CCANNNNNTGG 9 cut(s) 275, 311, 425, 506, 578, 761, 986, 1016, 2590
VneI GTGCAC 1 cut(s) 279
VpaK11BI GGWCC 3 cut(s) 51, 1181, 2867
XagI CCTNNNNNAGG 1 cut(s) 939
XapI RAATTY 2 cut(s) 2001, 2301
XceI RCATGY 1 cut(s) 2014
XcmI CCANNNNNNNNNTGG 3 cut(s) 62, 545, 1678
XmiI GTMKAC 3 cut(s) 2465, 2858, 2973
XmnI GAANNNNTTC 1 cut(s) 2302
XspI CTAG 2 cut(s) 771, 1743
ZrmI AGTACT 4 cut(s) 616, 640, 1234, 1636
Zsp2I ATGCAT 1 cut(s) 2834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.