Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002105

Physical Location & Seq

Genomic Coordinates Forward (+)

31817246 .. 31831599

Gene Structure 14354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1249300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 6441 bp

ATGGCGACCTCGATTGCTGCTCAGCTAGAAGCCATAAAATCCGTGATACAAGCCGACACGGAGCCGTCGGGGTCCAGCAAGAGGCCGTTCACCCGCCCTTCCATTCTCTTCGACGCCAAAGAGGCCGCCGATATCGATGTCCACACCATTTTCTCCATAGCACTCCAAGGTCTGGAGGTCCTTGTAAGCGTCGATGAGCGGTTTAGAATCTATAAGAATGACTTGTTCAGCCAAAAAAGCAAAGATTTGGATAGAGAGTTGATGGGCATTGAGGACAATAATCGGATTAATGCTTCGATTAGTTCGTACTTACGGTTACTCTCAGGACACTTTGAGCTGTCATCATCAATCAAGACACTTGAGTACTTGATACGCAGATACAAGATTCATGTCTACAACTTTGAGGAATTAATTTTGTGTGGTTTGCCATACCATGACACCCACATTTTTGTTCGAATAGTTCAGTTGATTAACTTGAGAAATAGTAAATGGAAATTTCTGGACGGCGTAAAAGCTTCTGGTGCACCACCACCTAGAAACGTTATAGTCCAGCAATGTATCCGTGATAAGGGGGTTTTGGAGATTTTATGCAACTATGCATCCCCATCAAAGAAGTATCGCCCGTCAAGGACCGTGATAAAATTTTGCATGGCAGTTGTCATCGAGGTTTTGGGTTCTGCTACATCTGTTGACAGTGATGTTGTGAAGAGAATCCTACCGCTCGTTGCTTCTGGACTTGAGTCAGGCACAAAAGGACATCCAGAAAACAAGGCCGGAGCCATGATGATTGTTGGTTTGCTAGCAAGTAAAGTTACATTATCTCCTAAGCTTGTGAAGAGTTTGATTAGGTCAATTGCTGAAATTGCTCGAGAGGAGGCGAAAGAGTCGGCTGATCTTCAGTTGTTTCGCTTATCACTTATGACTTTGATCAACCTTGTTCAGTTGCAAGCTGTGGATATGTTTCCAATCAAGACTATGGAGATTTTTATGGACATTAGGGATATCGCTGGAATACTTTTGGGACTGTTTAACGAGTTCAATATTGATAGATTCATTTTGGTGCTTTTGGATTCTCTGGTTGATTACAGTTCGTCTAATGAATCATGCCAGCTTGCCTTGATCTCGGTATTAGAGACAATTCCTTCCAAGAGTTTTGTTCAACATGTAGTTGCTAAGGTCTTATCATCCTGCTTGCAAAGTTCACAGAAAATAACAAATTCAACATCATCAATATCAGGAAGCTGGGCAAAGAAAATCTTAATTGTTCTTAGCAAGAAATATCCATCTGAACTACAGGGAGCGGTTCAGAAATTTCTTGATGAAAAGAATGTGCAAACTAAGAAAGGGGGCTCAGTATATGAAACTTTGGGTAAAATGTTGGATGGTAACTTGGACACGTCACTGGCTTTTTCGGAATCAAAAATTTGGTTTGGGTTGCACCATCCAAAGGCTGATGTTCGTCGCCGTGTACTGTCTGCATTGGGCACATCAGTTGTCCTGGAAGCCAAGGCTATTAATCCACAGAGTTTTGTAACCATCCAAGATGCCATATTGCGACAGCTTCATGATGATGATCTTACTGTTGTGCGGGCGGCTCTGTCTGTAGACAAATTGTCCACTATAATAAATTCTTCCGATCTTGTTGAAGCACTGGATGATGTTCTTAAAAGATGTTTTAGTATTCTGATGTCAAGTTCGTTGGAGAACACCAGTCTAGCTTGTGATGTTGCTGTTTTGTGCCTGAATAACGCTAGCTCTGATATCCATGATAATGTTGACCGTTGCAATATACTTGCTGCCATGATATTTCCTCTACTCCTTGTTCTGCCTAAGACACAGAGGTTAAATTTGAAAGCTTTGGAATTAGCTAAGGAGGTAAAATGGCCACTTTTTGAGAATCTTGCTGCGCCAGCTTCCAGTACAGCATTTGCATCACAACCGGGAAGGCTGTCCTCAATTAACATGGACACCATTACTGGTCTGGCCAGCAGGTTCTTGTTGCACCCTGAAGAATTTATGCCGTGGCTTGTTAATAGTGCTAATGCCTTTGAGTCGTCAAGGACACTTTTTTTCTTGGTGATGATGCAGACACTTGTTATTCAGAAGAACGAATCTGCTGAAGCTTTGGCCCTTTTCGAAATTGGGTTTCCTGCACTAAAGACCGAATGGGAAGCATTTGAGTCTGTAGGTGATAGCTCTATAGAAGAGTTCGATACAGAGATGCTAAATTGGGATTGCAGAACGTTCCTTGATAAGCTTGATTCCAATTTGAAATCATTAAATGCAAATATTCTCATATGCCTAGTTTGGAAGTTAATGAAGGCATTTTTGTCTGTGATGCCTGCAACTGTCTCTGTGGATGATGATAAGAAGTGGGTTAGCTGGCTTAGGGACTTGTTTGTCTTTTTTTCAGTTTCTAAATTTAAGAAAGTTTTCAAAGAACACCGTCATTACCTTGTCACAAAGTGCAAGGTCTCTGCTGTTTGCTTTTTGCCCAAGTTTTTCACAGAAGAAGATGTTCCAGTTGCAGTCCAAGTTGAGAGTCTTAATTGTTTTACTTATCTCTGTCGTCAACCAGAAGTTAGATTGCCAATCCAACTTCTTGCGGAATTTCCATCTGTTCTTGTTCCATTGGATAGTTACAATCAGGATATAAGAAATGCTGCCATGAGCTGTATTGAGGGGTTACTCACACTTTGGGCTCATGTTGACTCTTCGAGCAAGAAAAATGGAAACCATGCAACTTGGATACATTTTCTTGGTAAGCTTTTGGACTTGGTGGTTCAGCAAAAAAGACTCATCTTATCAGACAAAAACTTTCTTCTTTCCCTTTTGGCCTCTTCGCTCAGCCCATCCTACGAGAGCTTCATGGCACCAAAGAATATTGAGCTAAGGGTTGATCAATCTACAAGAGAGAAGATTCTTGCTTTCATTTTAAATTCCGCCCTGAAACTGCCTGATTATGCAAAGCTTTCAATTTTATCTTTGCTTAAAGGAATGGGCAATGCCATTTTACATGATAGAGAGATGAAGTCATTTTTATCACTGCTTTTGGAGAGACGCAGTCAAGATTGTGTCTCTAGCCATGGTTTGTCAAACACTGAAGTTCAGATACTATGCCATCTACTGGAGAGTTGTGCTATGCCTTCTCCATCAGATAAGCATGTTTCAGAGGATCATTTGTTGGAGGCTTTGAAGTTGGATGGTTTGGCTCCAGAAGACCCTGCTGTTATACAGCCTTGTCTAACTGTTCTGCAGAAGCTTAGCGGTCAAATATACAGTGGGCTAGAGACAGAAATACAGGACCTTCTGTTTCGAAGACTTCTTTCTTTATTTCGGAATGCTAATGGTGATATACAAAACGAAACTAGAGCGGCGCTGCTGCGGTTAAATATTACCTGCTCTACTATCATTCGGACACTTGATTACATAGTTAAAGACAGAACTGGTTCAGTGCATGGAAAGAAGAAAATGAAATTGGTAGGTCATCTGAAGTCCAGCCAGTCCCATGATTTGTCATGTAATGGAGAAAATGCACTCTCTCTCCTTGGATCCCTCCTTGAAGTTCTGCTATTTAAGAAAGACATAGAGAACAGGGATTCTCTTTTGGGGTCACTATTTAAACTTCTTTCCAAAACATTTTCCGATGAGTGGGTACAGAGTGTTCTTGACCAGGATGAAAAGTGTATTCAAGTCGTTTCTAGCAATTCTGACTCTTTGTCAAGCACAATAAGTTCCATACAACAGACATTGCTGATAATCCTAGAAGATATTTGTTCTTCTCTAACACATTCAGTTTCACTGGGGGATGACATATTACATGAGATTGATGTCAAAATGTTGGTTGAGTGCGCCCATTCTGCAAAAGATGGAGTTACTCGCAACCATGTATTTTCACTGATTTCCTCTATCACAAAGATTATTCCGGAAAAAGTTTTGGAGCATATACTGGATATTTTTACTGTTATTGGTGAAGCAGCAGTCACACAGATTGACAGCCATTCACAGCGTGTGTTTGAGGATCTTATATCTACAGTTGTTCCATGCTGGTTATCTGGGACAGGCAACAATGACAAATTGCTCCAGATTTTTATCAATATATTGCCGGAAGTTGCCGAGCATAGAAGGCTATCAATCATTGTATACCTACTGAGGACCTTGGGAGAGGCAAATAGTTTGGCTTCATTACTTGCCCTTCTCTTCCGTTCATTGGTTACACGAAAAGGATTATTTTACTTTGAGAGCACGCATACTTCAGATAGCTCCACAGCCTCATTACAGAGAGAGTGGGAATATTCTCTGGGTCTTCAAATATGTGAGCAATATTCATGCATGATATGGCTTCCCCCTTTGGTTTTGATGCTTAAACAAATAGGAGCTGGTATTCAGTCTCAAGAACTGTTTATCGAATTGTTAATTGCTATGCGATTCACCTTAAACAAATTGCAAGATCCAGAATTTGCCTTCAAGCTTGCATCAAGGGAAGATTCAGAAAAAATTCAGGCTACGCTGGAAGAGCTTATGGAGCAGGTTGTCTCTATCCAGCAACTTGTGGATGCAACAAGGAAGAAAAGGAGTATCCATGTTTCTGTTAGGAAAGAGTTGAAGGAGTGCATGCATGCTGTATTAAGGACTATTACAGTGGTCATGATGCCCCAGACACACTTCAGTGGTATCACTAAGTTGCTTGGCCATAGAGATAGAAATGTGGCAAAGAAGGCACTTGGACTCTTGTGTGAAACAGTTAGGGAGCATGACATGGTCCGACCAAAGCAAAAACATAAATCCATTTCCAGCGATCGGTGGCAGCATCTAGACGAGAATTCTCTTGAATCGTTTCACAGTATGTGTTTGAAAATTGTTCAGTTAGTTGATGATTCATCAGATGATATGGAAGTCTCTTTGAAGGTGGCAGCGGCTTTGGCTCTAGAAGTTCTGGCCCATAGGTTTTCTTCTAATCATTCCATCTTCATTGAGTGTCTACCATATGTTACAAAAAATATCAGTATGCACGACTTGGCAGTGTCCTCTAGCTGCCTTCAAGCAACTGGTGCTTTGATTAATGTGCTCGGGCACAGGGCACTATCTGAGCTTCCTCACGTAATGGAAAACTTGATTAGGATTTCTCGCAAAACATTTTTATCTTCAGATATGAAAACCATATCTGGTGTGGATGGCACGGATATTGCGTTACAAATACCAAAGGAATCTCTTATTTTATCTATTCTAGTCAGTTTGGAGGCTGTTGTAGTTAAGCTAGGAGGTTTCTTGAACCCCTATCTTGAAGAAATTACAAGAATTATGGTGCTTGATCTTGATTATGCGTCAGGGTCTGATCCGAAGCTGAAAATGAAAGCTGACTCAGTACGAAGGCTCATCACTGAGAATATCCCTGTTCGACTTGCCCTACCGCCCTTGCTGAAAATATACTCTAGTACGGTTGAGTCTGGTGATTCGAGCTTAGCAGTTTATTTTGGAATGCTGGAAAACATGATTGGTAGAATGGATAGATCATCTGTTAGTGGTTACCATGCTAAGATTTTTGACCTCTGCTTGCTTGCTCTTGATCTACGTCGCCAACATCCTGCATCTGTTCAGAAAATTGATGATGTAGAGAAGATTGTGTTCAATGCAATGATTGCTCTCACTATGAAACTCACTGAGAGCCTGTTCAAGCCTCTTTTCATTAGAAGTATTGATTGGGCGGAGTCAGATGTGGAAGATATTGCAAGTACGGGAAATATACCGAGGGCTATATCTTTCTATGGTCTGGTAAATAAACTTGCTGAGAACCATCGATCTCTTTTTGTTCCTTACTTCAAATACTTGGTGGATGGTTGTGTGCGTTACCTTACTGTTGCTGGAGATGTGAATACTTCTGGTTCAACACGAAAAAAGAAGGCTAAAATTCAGGAAGGGAAGGACAACAGTATATTGCTTGGCAACTGGCATCTCAGGGCTTTGGTGTTATCCTCTTTACACAAGTGTTTTCTCTATGATACTGGAAGCTTGAAGTTTTTGGACTCTTCGAATTTTCAGGTTCTACTGAAACCCATTGTTTCACAGCTCGTCGCTGAACCACCATCGTCTCTAGAAGAGCATCCAGACATACCATCCGTGGAGGAAGTTGATAATTTATTGGTGGTTTGTATTGGTCAAATGGCTGTGACTGCAGGAAGTGACCTTTTATGGAAGCCCTTGAATTATGAGGTGCTGATGCAGACACGCAGTGACAATGTACGGACCCGAATTTTGGGCCTGAGAATTGTCAAGTATCTATTGGAGCATCTGAGAGAAGAATATCTGGTATTCCTGCCCGAGACCATTCCGATCTTGGGAGAATTGCTCGAGGATGTGGAGCTCCCTGTTAAATCTCTTGCGCAGTCGATTCTCAAGGATATGGAGACCATGAGTGGTGAAAGCCTCAGAGAGTACCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006355 GO:0006356 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034455 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0045893 GO:0045935 GO:0045943 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

BP28CT U3snoRNP10

Protein Analysis

2147

Amino Acids

239.86

Weight (kDa)

6.17

Isoelectric Point (pI)

44.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U3snoRNP10	PF12397	234 - 359	1.3e-21	U3 small nucleolar RNA-associated protein 10
ARM_At3g06530	PF24477	639 - 826	2.9e-77	At3g06530-like, ARM repeats
HEAT_HEATR1	PF23243	1354 - 1547	3.8e-69	HEATR1-like, HEAT repeats
BP28CT	PF08146	1840 - 2003	2.3e-39	BP28CT (NUC211) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06530 AT3G06530 AT3G06530 AT3G06530 AT3G06530
fragaria_vesca	FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990
malus_domestica	MD07G1249300.v1.1
prunus_persica	Prupe.2G273000_v2.0.a1 Prupe.2G273000_v2.0.a1 Prupe.2G273000_v2.0.a1
pyrus_communis	pycom01g18810 pycom01g18840 pycom05g24490 pycom07g22250 pycom07g22260
rosa_chinensis	RchiOBHm_Chr1g0373711 RchiOBHm_Chr1g0373721 RchiOBHm_Chr5g0059891 RchiOBHm_Chr7g0224071
rosa_laevigata	RLG00000026806
rosa_multiflora	Rmu_co8395535.1_g000001 Rmu_sc0002606.1_g000003 Rmu_sc0002606.1_g000005 Rmu_sc0010519.1_g000004 Rmu_sc0023430.1_g000002
rosa_roxburghii	Rroxscaffold_4G00284050 Rroxscaffold_5G00353230
rosa_rugosa	Rorug01G0379200
rosa_samantha	Rh1AG388500 Rh1BG352900 Rh1CG365800 Rh1DG383300 Rh3AG266200 Rh3DG308600
rosa_wichuraiana	Rw1G034670 Rw3G029530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2399
Acc16I	TGCGCA	1 cut(s)	6381
Acc36I	ACCTGC	3 cut(s)	1980, 3407, 4519
AccB1I	GGYRCC	1 cut(s)	2872
AccB7I	CCANNNNNTGG	2 cut(s)	172, 3127
AccBSI	CCGCTC	4 cut(s)	199, 721, 1301, 3374
AccI	GTMKAC	4 cut(s)	393, 1605, 4143, 4981
AccIII	TCCGGA	1 cut(s)	3925
AclI	AACGTT	2 cut(s)	540, 2243
AclWI	GGATC	6 cut(s)	3183, 3546, 3559, 4029, 4445, 5330
AcoI	YGGCCR	3 cut(s)	1883, 1983, 4690
AcuI	CTGAAG	8 cut(s)	881, 2028, 2139, 3123, 3512, 4239, 4651, 5130
AcyI	GRCGYC	1 cut(s)	114
AdeI	CACNNNGTG	3 cut(s)	2466, 4010, 6230
AflIII	ACRYGT	2 cut(s)	1162, 1395
AhdI	GACNNNNNGTC	2 cut(s)	1612, 3718
AjiI	CACGTC	1 cut(s)	1398
AjnI	CCWGG	2 cut(s)	1497, 3672
AjuI	GAANNNNNNNTTGG	6 cut(s)	3461, 3493, 5478, 5510, 5683, 5715
AleI	CACNNNNGTG	1 cut(s)	4668
Alw21I	GWGCWC	4 cut(s)	526, 4247, 5070, 6363
Alw44I	GTGCAC	1 cut(s)	522
AlwI	GGATC	6 cut(s)	3183, 3546, 3559, 4029, 4445, 5330
AlwNI	CAGNNNCTG	1 cut(s)	5333
Ama87I	CYCGRG	4 cut(s)	867, 5069, 6317, 6347
Aor13HI	TCCGGA	1 cut(s)	3925
ApaLI	GTGCAC	1 cut(s)	522
ArsI	GACNNNNNNTTYG	2 cut(s)	6235, 6267
AseI	ATTAAT	4 cut(s)	288, 410, 1515, 5061
Asp700I	GAANNNNTTC	5 cut(s)	2432, 2517, 3448, 4497, 4836
AspLEI	GCGC	4 cut(s)	1909, 3379, 3854, 6382
AsuC2I	CCSGG	1 cut(s)	1941
AsuHPI	GGTGA	8 cut(s)	82, 2089, 2201, 3362, 3983, 4423, 5462, 6428
AsuII	TTCGAA	4 cut(s)	454, 2136, 3316, 6029
AsuNHI	GCTAGC	2 cut(s)	799, 1751
AvaI	CYCGRG	4 cut(s)	867, 5069, 6317, 6347
AvaII	GGWCC	7 cut(s)	72, 178, 630, 3304, 4155, 4762, 6243
BaeGI	GKGCMC	4 cut(s)	526, 1487, 5076, 5083
BalI	TGGCCA	3 cut(s)	1885, 1985, 4692
BamHI	GGATCC	1 cut(s)	3551
BanI	GGYRCC	1 cut(s)	2872
BanII	GRGCYC	3 cut(s)	1352, 2704, 6363
BarI	GAAGNNNNNNTAC	2 cut(s)	3096, 3128
BbsI	GAAGAC	3 cut(s)	3225, 3325, 4298
Bbv12I	GWGCWC	4 cut(s)	526, 4247, 5070, 6363
BceAI	ACGGC	5 cut(s)	49, 70, 520, 1449, 2005
BciT130I	CCWGG	2 cut(s)	1499, 3674
BciVI	GTATCC	3 cut(s)	569, 2742, 4589
BclI	TGATCA	2 cut(s)	927, 2899
BcnI	CCSGG	1 cut(s)	1941
BfmI	CTRYAG	7 cut(s)	1292, 1602, 2184, 2199, 3254, 4032, 6171
BfoI	RGCGCY	1 cut(s)	3380
BfuAI	ACCTGC	3 cut(s)	1980, 3407, 4519
BfuI	GTATCC	3 cut(s)	569, 2742, 4589
BglI	GCCNNNNNGGC	1 cut(s)	122
BlpI	GCTNAGC	4 cut(s)	21, 2846, 3263, 5461
BmcAI	AGTACT	1 cut(s)	365
Bme1390I	CCNGG	3 cut(s)	1499, 1941, 3674
Bme18I	GGWCC	7 cut(s)	72, 178, 630, 3304, 4155, 4762, 6243
BmeRI	GACNNNNNGTC	2 cut(s)	1612, 3718
BmeT110I	CYCGRG	4 cut(s)	867, 5069, 6317, 6347
BmgBI	CACGTC	1 cut(s)	1398
BmiI	GGNNCC	7 cut(s)	63, 73, 778, 2874, 3213, 3553, 6245
BmrFI	CCNGG	3 cut(s)	1499, 1941, 3674
BmrI	ACTGGG	1 cut(s)	3812
BmtI	GCTAGC	2 cut(s)	803, 1755
BmuI	ACTGGG	1 cut(s)	3812
BoxI	GACNNNNGTC	1 cut(s)	739
BpiI	GAAGAC	3 cut(s)	3225, 3325, 4298
BplI	GAGNNNNNCTC	2 cut(s)	6330, 6362
BpmI	CTGGAG	5 cut(s)	194, 3149, 3198, 4067, 5883
Bpu10I	CCTNAGC	5 cut(s)	825, 1173, 1869, 2387, 2891
Bpu1102I	GCTNAGC	4 cut(s)	21, 2846, 3263, 5461
Bpu14I	TTCGAA	4 cut(s)	454, 2136, 3316, 6029
BpuEI	CTTGAG	5 cut(s)	380, 496, 758, 4377, 6377
BpuMI	CCSGG	1 cut(s)	1941
Bsa29I	ATCGAT	2 cut(s)	135, 5797
BsaAI	YACGTR	1 cut(s)	5101
BsaBI	GATNNNNATC	2 cut(s)	1572, 4091
BsaHI	GRCGYC	1 cut(s)	114
BsaI	GGTCTC	3 cut(s)	2479, 6314, 6398
BsaJI	CCNNGG	8 cut(s)	166, 1506, 2021, 3085, 3547, 4158, 5747, 6117
BsaWI	WCCGGW	1 cut(s)	3925
BsaXI	ACNNNNNCTCC	4 cut(s)	805, 835, 3528, 3558
Bse3DI	GCAATG	4 cut(s)	560, 3010, 3749, 5640
Bse8I	GATNNNNATC	2 cut(s)	1572, 4091
BseAI	TCCGGA	1 cut(s)	3925
BseBI	CCWGG	2 cut(s)	1499, 3674
BseCI	ATCGAT	2 cut(s)	135, 5797
BseDI	CCNNGG	8 cut(s)	166, 1506, 2021, 3085, 3547, 4158, 5747, 6117
BseJI	GATNNNNATC	2 cut(s)	1572, 4091
BseMI	GCAATG	4 cut(s)	560, 3010, 3749, 5640
BseRI	GAGGAG	1 cut(s)	887
BseSI	GKGCMC	4 cut(s)	526, 1487, 5076, 5083
BseYI	CCCAGC	1 cut(s)	1242
BsgI	GTGCAG	1 cut(s)	2136
Bsh1285I	CGRYCG	1 cut(s)	4801
BshNI	GGYRCC	1 cut(s)	2872
BshVI	ATCGAT	2 cut(s)	135, 5797
BsiEI	CGRYCG	1 cut(s)	4801
BsiHKAI	GWGCWC	4 cut(s)	526, 4247, 5070, 6363
BsiHKCI	CYCGRG	4 cut(s)	867, 5069, 6317, 6347
BsiSI	CCGG	4 cut(s)	774, 1940, 3926, 4106
BslFI	GGGAC	4 cut(s)	1035, 2405, 3490, 4072
BsmBI	CGTCTC	2 cut(s)	3052, 6093
BsmFI	GGGAC	4 cut(s)	1035, 2405, 3490, 4072
BsmI	GAATGC	2 cut(s)	3346, 5484
Bso31I	GGTCTC	3 cut(s)	2479, 6314, 6398
BsoBI	CYCGRG	4 cut(s)	867, 5069, 6317, 6347
Bsp119I	TTCGAA	4 cut(s)	454, 2136, 3316, 6029
Bsp1286I	GDGCHC	9 cut(s)	526, 1352, 1487, 2704, 4247, 5070, 5076, 5083, 6363
Bsp13I	TCCGGA	1 cut(s)	3925
Bsp1720I	GCTNAGC	4 cut(s)	21, 2846, 3263, 5461
Bsp19I	CCATGG	1 cut(s)	3085
BspDI	ATCGAT	2 cut(s)	135, 5797
BspEI	TCCGGA	1 cut(s)	3925
BspHI	TCATGA	2 cut(s)	1564, 4647
BspLI	GGNNCC	7 cut(s)	63, 73, 778, 2874, 3213, 3553, 6245
BspMAI	CTGCAG	2 cut(s)	3258, 6175
BspMI	ACCTGC	3 cut(s)	1980, 3407, 4519
BspOI	GCTAGC	2 cut(s)	803, 1755
BspPI	GGATC	6 cut(s)	3183, 3546, 3559, 4029, 4445, 5330
BspQI	GCTCTTC	2 cut(s)	4509, 6090
BspT104I	TTCGAA	4 cut(s)	454, 2136, 3316, 6029
BspT107I	GGYRCC	1 cut(s)	2872
BspTNI	GGTCTC	3 cut(s)	2479, 6314, 6398
BsrBI	CCGCTC	4 cut(s)	199, 721, 1301, 3374
BsrDI	GCAATG	4 cut(s)	560, 3010, 3749, 5640
BssECI	CCNNGG	8 cut(s)	166, 1506, 2021, 3085, 3547, 4158, 5747, 6117
BssNAI	GTATAC	1 cut(s)	4144
BssNI	GRCGYC	1 cut(s)	114
BssT1I	CCWWGG	5 cut(s)	166, 1506, 3085, 3547, 4158
Bst1107I	GTATAC	1 cut(s)	4144
Bst2UI	CCWGG	2 cut(s)	1499, 3674
BstACI	GRCGYC	1 cut(s)	114
BstAPI	GCANNNNNTGC	2 cut(s)	5051, 5639
BstBAI	YACGTR	1 cut(s)	5101
BstBI	TTCGAA	4 cut(s)	454, 2136, 3316, 6029
BstDSI	CCRYGG	3 cut(s)	2021, 3085, 6117
BstEII	GGTNACC	1 cut(s)	5525
BstH2I	RGCGCY	1 cut(s)	3380
BstHHI	GCGC	4 cut(s)	1909, 3379, 3854, 6382
BstMCI	CGRYCG	1 cut(s)	4801
BstNI	CCWGG	2 cut(s)	1499, 3674
BstNSI	RCATGY	4 cut(s)	1166, 3167, 4618, 4622
BstPAI	GACNNNNGTC	1 cut(s)	739
BstPI	GGTNACC	1 cut(s)	5525
BstSCI	CCNGG	3 cut(s)	1497, 1939, 3672
BstSFI	CTRYAG	7 cut(s)	1292, 1602, 2184, 2199, 3254, 4032, 6171
BstSLI	GKGCMC	4 cut(s)	526, 1487, 5076, 5083
BstV2I	GAAGAC	3 cut(s)	3225, 3325, 4298
BstX2I	RGATCY	3 cut(s)	3551, 4021, 4450
BstYI	RGATCY	3 cut(s)	3551, 4021, 4450
BstZ17I	GTATAC	1 cut(s)	4144
Bsu15I	ATCGAT	2 cut(s)	135, 5797
BsuI	GTATCC	3 cut(s)	569, 2742, 4589
BsuTUI	ATCGAT	2 cut(s)	135, 5797
BtgI	CCRYGG	3 cut(s)	2021, 3085, 6117
BtrI	CACGTC	1 cut(s)	1398
BtsI	GCAGTG	3 cut(s)	3044, 5028, 6235
BveI	ACCTGC	3 cut(s)	1980, 3407, 4519
CaiI	CAGNNNCTG	1 cut(s)	5333
CciI	TCATGA	2 cut(s)	1564, 4647
CfoI	GCGC	4 cut(s)	1909, 3379, 3854, 6382
ClaI	ATCGAT	2 cut(s)	135, 5797
CseI	GACGC	4 cut(s)	122, 178, 3069, 5313
DraI	TTTAAA	2 cut(s)	2937, 3622
DraIII	CACNNNGTG	3 cut(s)	2466, 4010, 6230
DrdI	GACNNNNNNGTC	1 cut(s)	2399
DriI	GACNNNNNGTC	2 cut(s)	1612, 3718
DseDI	GACNNNNNNGTC	1 cut(s)	2399
EaeI	YGGCCR	3 cut(s)	1883, 1983, 4690
Eam1105I	GACNNNNNGTC	2 cut(s)	1612, 3718
EciI	GGCGGA	2 cut(s)	2932, 5720
Ecl136II	GAGCTC	1 cut(s)	6361
Eco130I	CCWWGG	5 cut(s)	166, 1506, 3085, 3547, 4158
Eco24I	GRGCYC	3 cut(s)	1352, 2704, 6363
Eco31I	GGTCTC	3 cut(s)	2479, 6314, 6398
Eco32I	GATATC	3 cut(s)	133, 1003, 1762
Eco47I	GGWCC	7 cut(s)	72, 178, 630, 3304, 4155, 4762, 6243
Eco53kI	GAGCTC	1 cut(s)	6361
Eco57I	CTGAAG	8 cut(s)	881, 2028, 2139, 3123, 3512, 4239, 4651, 5130
Eco88I	CYCGRG	4 cut(s)	867, 5069, 6317, 6347
Eco91I	GGTNACC	1 cut(s)	5525
EcoICRI	GAGCTC	1 cut(s)	6361
EcoO109I	RGGNCCY	3 cut(s)	178, 3304, 4155
EcoO65I	GGTNACC	1 cut(s)	5525
EcoRI	GAATTC	1 cut(s)	4822
EcoRII	CCWGG	2 cut(s)	1497, 3672
EcoRV	GATATC	3 cut(s)	133, 1003, 1762
EcoT14I	CCWWGG	5 cut(s)	166, 1506, 3085, 3547, 4158
EcoT22I	ATGCAT	3 cut(s)	601, 4334, 4620
EcoT38I	GRGCYC	3 cut(s)	1352, 2704, 6363
ErhI	CCWWGG	5 cut(s)	166, 1506, 3085, 3547, 4158
Esp3I	CGTCTC	2 cut(s)	3052, 6093
FalI	AAGNNNNNCTT	4 cut(s)	206, 238, 1241, 1273
FaqI	GGGAC	4 cut(s)	1035, 2405, 3490, 4072
FauI	CCCGC	2 cut(s)	101, 1581
FauNDI	CATATG	2 cut(s)	2297, 4987
FbaI	TGATCA	2 cut(s)	927, 2899
FblI	GTMKAC	4 cut(s)	393, 1605, 4143, 4981
FriOI	GRGCYC	3 cut(s)	1352, 2704, 6363
FspI	TGCGCA	1 cut(s)	6381
GlaI	GCGC	4 cut(s)	1908, 3378, 3853, 6381
GsaI	CCCAGC	1 cut(s)	1246
GsuI	CTGGAG	5 cut(s)	194, 3149, 3198, 4067, 5883
HaeII	RGCGCY	1 cut(s)	3380
HapII	CCGG	4 cut(s)	774, 1940, 3926, 4106
HgaI	GACGC	4 cut(s)	122, 178, 3069, 5313
HhaI	GCGC	4 cut(s)	1909, 3379, 3854, 6382
Hin1I	GRCGYC	1 cut(s)	114
Hin6I	GCGC	4 cut(s)	1907, 3377, 3852, 6380
HinP1I	GCGC	4 cut(s)	1907, 3377, 3852, 6380
HincII	GTYRAC	4 cut(s)	691, 1777, 2573, 2710
HindII	GTYRAC	4 cut(s)	691, 1777, 2573, 2710
HpaII	CCGG	4 cut(s)	774, 1940, 3926, 4106
HphI	GGTGA	8 cut(s)	82, 2089, 2201, 3362, 3983, 4423, 5462, 6428
Hpy99I	CGWCG	6 cut(s)	70, 116, 194, 1464, 5577, 6074
HpyCH4IV	ACGT	5 cut(s)	540, 1397, 2243, 5100, 5572
HpySE526I	ACGT	5 cut(s)	540, 1397, 2243, 5100, 5572
Hsp92I	GRCGYC	1 cut(s)	114
HspAI	GCGC	4 cut(s)	1907, 3377, 3852, 6380
Kpn2I	TCCGGA	1 cut(s)	3925
Ksp22I	TGATCA	2 cut(s)	927, 2899
LguI	GCTCTTC	2 cut(s)	4509, 6090
MaeII	ACGT	5 cut(s)	540, 1397, 2243, 5100, 5572
MbiI	CCGCTC	4 cut(s)	199, 721, 1301, 3374
MfeI	CAATTG	1 cut(s)	852
MflI	RGATCY	3 cut(s)	3551, 4021, 4450
MhlI	GDGCHC	9 cut(s)	526, 1352, 1487, 2704, 4247, 5070, 5076, 5083, 6363
MlsI	TGGCCA	3 cut(s)	1885, 1985, 4692
MluNI	TGGCCA	3 cut(s)	1885, 1985, 4692
MmeI	TCCRAC	6 cut(s)	1359, 1680, 2620, 3165, 3180, 4789
Mox20I	TGGCCA	3 cut(s)	1885, 1985, 4692
Mph1103I	ATGCAT	3 cut(s)	601, 4334, 4620
MroI	TCCGGA	1 cut(s)	3925
MroXI	GAANNNNTTC	5 cut(s)	2432, 2517, 3448, 4497, 4836
MscI	TGGCCA	3 cut(s)	1885, 1985, 4692
MslI	CAYNNNNRTG	4 cut(s)	1058, 1569, 1770, 4668
Msp20I	TGGCCA	3 cut(s)	1885, 1985, 4692
MspA1I	CMGCKG	1 cut(s)	4916
MspI	CCGG	4 cut(s)	774, 1940, 3926, 4106
MspR9I	CCNGG	3 cut(s)	1499, 1941, 3674
MunI	CAATTG	1 cut(s)	852
Mva1269I	GAATGC	2 cut(s)	3346, 5484
MvaI	CCWGG	2 cut(s)	1499, 3674
NciI	CCSGG	1 cut(s)	1941
NcoI	CCATGG	1 cut(s)	3085
NdeI	CATATG	2 cut(s)	2297, 4987
NheI	GCTAGC	2 cut(s)	799, 1751
NlaIV	GGNNCC	7 cut(s)	63, 73, 778, 2874, 3213, 3553, 6245
NmeAIII	GCCGAG	1 cut(s)	4141
NmuCI	GTSAC	7 cut(s)	1398, 2458, 3612, 3982, 6166, 6179, 6230
NsbI	TGCGCA	1 cut(s)	6381
NsiI	ATGCAT	3 cut(s)	601, 4334, 4620
NspI	RCATGY	4 cut(s)	1166, 3167, 4618, 4622
NspV	TTCGAA	4 cut(s)	454, 2136, 3316, 6029
OliI	CACNNNNGTG	1 cut(s)	4668
PaeI	GCATGC	2 cut(s)	4618, 4622
PaeR7I	CTCGAG	2 cut(s)	867, 6347
PagI	TCATGA	2 cut(s)	1564, 4647
PciI	ACATGT	1 cut(s)	1162
PciSI	GCTCTTC	2 cut(s)	4509, 6090
PcsI	WCGNNNNNNNCGW	2 cut(s)	302, 5186
PctI	GAATGC	2 cut(s)	3346, 5484
PdmI	GAANNNNTTC	5 cut(s)	2432, 2517, 3448, 4497, 4836
PflFI	GACNNNGTC	2 cut(s)	3063, 4760
PflMI	CCANNNNNTGG	2 cut(s)	172, 3127
PfoI	TCCNGGA	1 cut(s)	1497
Ple19I	CGATCG	1 cut(s)	4801
Ppu21I	YACGTR	1 cut(s)	5101
PpuMI	RGGWCCY	3 cut(s)	178, 3304, 4155
PscI	ACATGT	1 cut(s)	1162
PshAI	GACNNNNGTC	1 cut(s)	739
PshBI	ATTAAT	4 cut(s)	288, 410, 1515, 5061
Psp124BI	GAGCTC	1 cut(s)	6363
Psp1406I	AACGTT	2 cut(s)	540, 2243
Psp5II	RGGWCCY	3 cut(s)	178, 3304, 4155
Psp6I	CCWGG	2 cut(s)	1497, 3672
PspEI	GGTNACC	1 cut(s)	5525
PspFI	CCCAGC	1 cut(s)	1242
PspGI	CCWGG	2 cut(s)	1497, 3672
PspN4I	GGNNCC	7 cut(s)	63, 73, 778, 2874, 3213, 3553, 6245
PspPPI	RGGWCCY	3 cut(s)	178, 3304, 4155
PspXI	VCTCGAGB	1 cut(s)	6347
PsrI	GAACNNNNNNTAC	2 cut(s)	3648, 3680
PstI	CTGCAG	2 cut(s)	3258, 6175
PstNI	CAGNNNCTG	1 cut(s)	5333
PsuI	RGATCY	3 cut(s)	3551, 4021, 4450
PsyI	GACNNNGTC	2 cut(s)	3063, 4760
PvuI	CGATCG	1 cut(s)	4801
RseI	CAYNNNNRTG	4 cut(s)	1058, 1569, 1770, 4668
SacI	GAGCTC	1 cut(s)	6363
SapI	GCTCTTC	2 cut(s)	4509, 6090
ScaI	AGTACT	1 cut(s)	365
ScrFI	CCNGG	3 cut(s)	1499, 1941, 3674
SduI	GDGCHC	9 cut(s)	526, 1352, 1487, 2704, 4247, 5070, 5076, 5083, 6363
SfcI	CTRYAG	7 cut(s)	1292, 1602, 2184, 2199, 3254, 4032, 6171
Sfr274I	CTCGAG	2 cut(s)	867, 6347
SfuI	TTCGAA	4 cut(s)	454, 2136, 3316, 6029
SinI	GGWCC	7 cut(s)	72, 178, 630, 3304, 4155, 4762, 6243
SlaI	CTCGAG	2 cut(s)	867, 6347
SmiMI	CAYNNNNRTG	4 cut(s)	1058, 1569, 1770, 4668
SmlI	CTYRAG	7 cut(s)	359, 475, 737, 867, 4392, 6347, 6392
SmoI	CTYRAG	7 cut(s)	359, 475, 737, 867, 4392, 6347, 6392
SphI	GCATGC	2 cut(s)	4618, 4622
SspI	AATATT	6 cut(s)	1042, 2290, 2884, 3394, 4295, 4325
SstI	GAGCTC	1 cut(s)	6363
StyD4I	CCNGG	3 cut(s)	1497, 1939, 3672
StyI	CCWWGG	5 cut(s)	166, 1506, 3085, 3547, 4158
TaiI	ACGT	5 cut(s)	543, 1400, 2246, 5103, 5575
TaqII	GACCGA	1 cut(s)	2177
TatI	WGTACW	3 cut(s)	363, 1468, 1919
TauI	GCSGC	4 cut(s)	128, 1595, 3377, 4919
TseFI	GTSAC	7 cut(s)	1398, 2458, 3612, 3982, 6166, 6179, 6230
Tsp45I	GTSAC	7 cut(s)	1398, 2458, 3612, 3982, 6166, 6179, 6230
TspGWI	ACGGA	7 cut(s)	31, 74, 551, 4193, 5195, 6106, 6256
Tth111I	GACNNNGTC	2 cut(s)	3063, 4760
Van91I	CCANNNNNTGG	2 cut(s)	172, 3127
VneI	GTGCAC	1 cut(s)	522
VpaK11BI	GGWCC	7 cut(s)	72, 178, 630, 3304, 4155, 4762, 6243
VspI	ATTAAT	4 cut(s)	288, 410, 1515, 5061
XbaI	TCTAGA	3 cut(s)	4813, 4927, 6091
XceI	RCATGY	4 cut(s)	1166, 3167, 4618, 4622
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1978, 5167, 6331
XhoI	CTCGAG	2 cut(s)	867, 6347
XmiI	GTMKAC	4 cut(s)	393, 1605, 4143, 4981
XmnI	GAANNNNTTC	5 cut(s)	2432, 2517, 3448, 4497, 4836
ZrmI	AGTACT	1 cut(s)	365
Zsp2I	ATGCAT	3 cut(s)	601, 4334, 4620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.