Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002105

Physical Location & Seq

Genomic Coordinates Forward (+)

61806025 .. 61819790

Gene Structure 13766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG388500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5982 bp

ATGGCGACCTCGATTGCGTCCCAGTTAAAAGTCCTGAAATCGCTGATACAAGTCGACCAAGACCCGTCGCAGAAGCGGCCCTTCACTCGCCCTTCCATCCTCTTCGACCCCAAAGAGGCCGCCGATATCGACATCGACACAATTTTCGCCGTAGGACTTCAAGGTCTTGAGCTTCTTGTTAGTACCGACGAGCGGTTCCGAAACTTTAAGAGTGACTTGTTCAGCTACCAGAGTAAGGAATTGGATAGAGAGTTGATGGGAGTAGAGGAAAACAAACGCATTGATGCTTCGATTAGTAAGTACTTGAGATTGCTGTCAGGGCATTTCGAGCTCCCATCGTCACTCAAGACTCTCGAGTACTTGGTGCGAAGATATAAGATCCATGTGTACAACTTCGAGGAATTGATTTTGTGTGCTCTGCCGTACCATGAGACCCATGCATTTGTTAAAATTGTTCAATTAATTAACTTCGGAAATAGCAAGTGGAAATTTTTAGAGGGCGTGAAAGTTTCTGGTGCAGCGCCACCTAGAAATGTTATAGTGCAGCAATGTATTCGTGACATGGGGGTTTTGGAGGCTTTATTCGACTATGCATCCCCGTCAAAGAAGTATCGGCCTTCAAAGCCCGTGATCAGATTTTGCACGGCAGTTGTTGTTGAGGTTTTGGGTTCTGTTGCATCTGTTGAAAGTCATGTTGTGAAAAGAATCTGTTCACTTATTCATTCTGTACTTGAGGTTGGCACAGATGGACATTCAGAAAACAAGGCTGGTGCTATGATGATTGTTGGTATGCTAGCAAGTAAAGTTACAATATCTCCCGGACTTGTCAAGGGATTGATTTTATTAATTGCTAAAGTTGCTGAAGAGGATGCAAAAGAGTCAGCTGATCTTCAGCTTTTTCGCTTATCACTTATGACTTTGATCAACCTTGTTCAGGAAAAGAATGTGCAATCTAAGAAACGGGGTTCGGTACATGAAGCTCTGCGTAAAATGTTGGATGGGAATTTGGACAGGTCACTAGCTTGCTCAGAATCAAATTTTTGGTTCAGGTTGCATCATCCAGAGGCTGGTGTTCGTCGCCATACACTTTCTGAAATAAGGACATCAGGTCTTCTGGAAGCCAAGGGTACAAATTCGCAGAGTCTTGTAATCATCCAAGATGGCATATTGCGACAGCTTCAGGATGATGATCTTAGCGTTGTCAGAGCGGCTTTGTCGTTAGACAGATTGTCCAGTTTAATAAACCCATCTGATCTTATTGAAGTACTGGACAATCTGCTTAGAAGATGCATTGGTCTTTTAACAAGGCCATTGGAGAACAATAGCCTAGCATGTGATGTTGCTATTTTGTGCCTAAAGAATGCTATTGCTGACATCCATGAGAATGTTGAATGTTGCAATAAACTAGCTGCTATGATATTTCCTTTGCTCCTTGTTGTACCTAAGACACAGAGGTTAAATTTGAAAGCATTGGAATTAGCTAAGGCAGTAAAATGGCCACTGTTTGAGAATCTTGCTGCTGCATGCAATACAGAACAAACATTACAACCAGGAAGGTTATCCTCCATTAACATGGCCACCATTACTAGTTTGGCGAGCAGATTCTTGTTGCACCCTGCAGAATTTATGCCTTGGCTTGTTCAGAGTTCTAATGACTTTGAGTTGTCAAAGACGCACTTCTTTTTGGTGATGATGCAGACAATTCTGATTGAAAAGGAATCTGCTGAATGTTTGGAACTTTTTGAAGTTTTGTTTCCTGCATTGAAGACGGAATGGGAATCATTTGAGTCTACGGGTGATATCTCTATAGCAGAGTTCAAAACAGAGATGCTGAATTGGGATTGCAGCAGATTTCTTGATAAGCTAGATTCCAATTTGAAAGCAATAAATGCAAATATTCTAATTTGCATCTTTTGGAGGTTGATGGAGGCATTTCTATCTGCGATGCCTGCAGATGTCTCATTGGATGGTGATGGGAAGTGGGTTAGCTGGCTCAGGGAATTGTTTGCCTTCTTCTCAGGCTGTCAGTTTAAGAACATATTTAAGGAGCACCGTCATTACGTTGTCACAAAGTGCAAGATATCTGCTGTTTCTTTCCTTGCCAAGTTTTTCGCAGAAGAAGACGTTCCTGTTGCAGTCCAGGTCGAGAGTCTTCACTGTTTTTCCTATCTGTGTCTTCAATCAGAAGTTAGATTGCCAATTCAATTTCTTGCTGAATTTCCATCTCTTCTTGTTCCACTGGCTAGTTGTAACCAGGAGATAAGAAATGTTGCCATGAATTGTGTTGAGGGTTTACAGACCTTTTCATCTCATGTTGACTCTTTGAGCAAGAAAAATGGAAACCGTACAATTCGGATTAATCATCTTGATAAGCTGCTGGACTTGTTGGTCCAGCAGAAAAGGCTAATCCTATCGGACAGGAACTTGCTTCCTTCTCTCTTGGCCTCTTTGCTCAGCCCGTCCTTCCAGAGCTTCTTAGGACCAAAGAATATTGAGATAAGGTTTGATCAATCTACAAGAGAAGAGATTCTTACTTTCATGTTGAATTCTGCCATGAAACTGCCTGATTATGCAAGGCTTGCTATTCTTTCTTTGCTCAGAGGAACAGGCAATGCCATTATACATCATAAAGAAGTTGAGTCATATTTATCTCATCTCTTGGAAAGACGCAGTCGGAGTTTGTCAAAAATTGAAGTTCAGATATTATGCCTTCTACTGGAGTGCTGTGCAGTGCCTTCTTCATCAGACGGGCATGTATTTGAGGACCATTTATTGGAGGCTTTGCAATTGGATGGCTTGGCTCCAGAAGACGCTTCCACCATACAGCCTTGTATTACTGTCCTGCAAAAGCTTAACAGCCAAATTTACAGTGGACTGAAGACTGAAGTGCAGGAGCTTTTGTTCCGAAAACTGGTAGCTGTGTTTCAGAATTCAAATGGGGACATACAAAATGCAACTAGAGCAGCCTTGCAGCGTTTACATATTACTTGCTCCACTATCGTCCACACTCTCGATCACATACTCAAAGATGGAAGTTGTGCAAGTCGTTCAGTGCACGGAACAAAGAAAATGAAACGTCAGAAGTCCACTTCGTCTAGTGACGTGATATGTGACGGAGAAAATGCACTCTCTTTACTTGGTTCCCTCCTTGGTATTTTATTATTTAAGAAAGACATAGAGAAGAGGGACTCTCTATTGGGGCCGTTGTTGAAGCTTCTTTACAAAACCTTTTCCAATGAGTGGGTACAGGACCACTTTAGCATTTCTGATGCCAGGTTGAGCACAGTAAATTACATACAACAGACACTGCTGATAATCTTAGAAGATATCAGTTCTTCACTAATAAGTTCTATTCCACTGGAGGACAACATGGTAAATGAGATTAATGTCAAACATTTGGTTGAGTGTGCCCATTCTGCGAAGGATGGAGTTACTCGCAACCATGTCTTTTCACTGATTTCCTCCATCACAAAGATCGTTCCAGAAAAAGTTTTGGAGCATATGCTGGATATCTTTGCTGTTATTGGAGAGTCAGCAGTCACACAGATTGATAGCCATTCACAGCGTGTGTTTGAGGATCTTTTATCTACAGTTGTTCCTTGTTGGCTGTCTGGGGCAGGCAGCAATGACAAATTGCTGCAGATTTTTGTTAATGTACTGCCTGAAGTTGCTGAATATAGAAGGCTCTCAATTGTTGTGTACCTACTGAGGACTTTGGGAGAGTCAAATAGCTTGGCTTCATTACTTGTTCTTCTTTTCCGTTCACTAATTTCAAGAAAAGGGTCATCTTGGTTTGATAATGTGCATGCTTCAGATAGCTCCACAACCTCTTTACAGAGAGAGTGGGAGTATGCCCTAGCGCTTCAAATATGTGAGCAATATTCATGTATGATATGGCTTCCCCCTCTTGTTATGCTGCTTAAACAAATGGAAACTGGTCAAGAGGTATTTAGAGAATTGTTAATTGCAATGCGGTTCACCTTGCATAAGCTGCAAGATCCCGAGTTTGCGCTCAAGATGGCATCTGGGGAAGAGTCGGACAAAATTCAGGCTACATTGGGAGAACTCATGGAGCAGGTTGTCTCTCTCCAGCAACTGGTAGATGCAAGAAGGAAGGATAAAAATATCAATGTCATTAGGAAAGATTTGAAGGAGTGTATGCATGCTGTAATGAGGGCTATTACTGGGGTCATGAACCCTTCGACACTCTTTAATGGCATAACTAAGTTGCTTGGCCACAGAGATCAAAATGTGGAAAAGAAGGCACTTGGACTCCTATGTGAAACCATTAGGAATCTTGACATGGTCAAAGCAAAGCTTAAGTTTAATAAAAGTTGTAGTCTTCATTGGCATCATCTTGATGAGATCTCTCTTGGATCGTTGCGAGTTATGTGTATGAAAATTGTTCAGTTAATTGATGATTCTTCTGATGATTTGGAAGTCTCCTTGAAAGTGGCAGCAGCTTTGGCTCTAGAAGTTTTAGCCCACCGGTTCCCTTCTAACTCTTCCATCTTCAGTGAGTGTCTACCATCTGTAACAAAAAGTATTGGTACGCACGATTTGGCAGTGTCATCTAGCTGCCTTCAAACAACTGGTGCTTTGATCAATGTGCTTGGACCCAAGGCACTCTCTGTGCTTCCTCACATAATGGATAGTTTGATTAAGATTTCTCGTGAAGTCCTTGTATCTTCGGATACAAAAGCCATATCCAGTGGTGATAGCCGGCCTGTTGTGTTACAAAAACCCCAGGAATCTCTTATTCTGTCTATTCTTGTTACTTTGGAGGCTGTTGTGGTTAAGCTAGGGCAGTTCTTAAGCCCATATCTTGAAGATATTACAAGAGTTACGGTGCTCGATCTTGATTATGCGTTAGGATCTGATCAGAAGCTGAAAATGCGAGCTGATTCAGTACGAAAGCTCATCACCGAGAACATCACAGTTCGACTTGCTCTACCGCCCTTGCTAAACATATACTCTAGCACAGTTGAGTCTGGGGATTCCAGTTTATTAATTTATTTTGGAATGCTGGCCAACATGATTGGAAGAATGGATAGAACATCTGTTGGTGGTTACCATGCTAAGATTTTTGAACGGTGCTTGATTGCTCTTGATCTACGCCGTCAACATCCGGCTTCTGTTCAAAGAATTGATGATGTAGAGAAAAGTGTATTCGCTGCTATGATTTCTCTCACTATGAAGCTCACTGAGACGATGTTTAGACCTCTTTTCATTAGGAGTATTGATTGGGCAAACTCAGATGTGGAAGATACTTCTCCTGCAGGATATATACCGAGGGCTATATCTTTCTATGGCCTGGTAAATAAACTTGCGGAAAACCATAGGTCTCTTTTTGTTCCTTATTTCAAATACTTGCTGGAGAATTGTGTACATTATCTTACTGTCGCTGGAGATGCAAAGCCTTCTGGTTTAACACGAAAGAAGAAGGCCAAGATTCAGGAATCCGATAACAGCATGTTCCTTGGAAACTGGCATCTTAGAGCGCTGGTCTTATCATCATTACATAAATGTTTTCTCTATGATACGGGAAGCATGAAGTTTCTTGATTCTTCCAATTTTCAGGTTCTACTGAAGCCCATTGTTTCCCAGCTTGTTATAGAACCTCCAGTTTCTCTAGAGGAGCATTCTGACATTCCGTCTGTGAAAGAAGTTGATGAATTATTGGTTGTTTGTGTTGGTCAAATGGCAGTGACTGCAGGAAGTGATCTTCTATGGAAGCCCTTGAATTATGAGGTGCTGATGCAGACACGCAGTGACAAGGTCCGTGCAAGAATTTTGGGCCTGAGAATTATTAAATATCTTGTGGAGCATCTAAGAGAAGAATATCTGGTATTTGTTCCAGAAACAGTTCCCTTCTTTGCTGAGTTGCTTGAGGATGTCGAGCCTTCTGTTAAATCTCTGGCACAAGAAATCTTCAACGAACTGAGCACCATGACTGGTGAAGACCTCTCACAGTATATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006355 GO:0006356 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034455 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0045893 GO:0045935 GO:0045943 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

BP28CT U3snoRNP10

Protein Analysis

1993

Amino Acids

223.38

Weight (kDa)

6.3

Isoelectric Point (pI)

45.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U3snoRNP10	PF12397	233 - 330	9.6e-08	U3 small nucleolar RNA-associated protein 10
ARM_At3g06530	PF24477	503 - 695	4.6e-81	At3g06530-like, ARM repeats
HEAT_HEATR1	PF23243	1209 - 1395	1.2e-65	HEATR1-like, HEAT repeats
BP28CT	PF08146	1689 - 1850	1.7e-39	BP28CT (NUC211) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06530 AT3G06530 AT3G06530 AT3G06530 AT3G06530
fragaria_vesca	FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990
malus_domestica	MD07G1249300.v1.1
prunus_persica	Prupe.2G273000_v2.0.a1 Prupe.2G273000_v2.0.a1 Prupe.2G273000_v2.0.a1
pyrus_communis	pycom01g18810 pycom01g18840 pycom05g24490 pycom07g22250 pycom07g22260
rosa_chinensis	RchiOBHm_Chr1g0373711 RchiOBHm_Chr1g0373721 RchiOBHm_Chr5g0059891 RchiOBHm_Chr7g0224071
rosa_laevigata	RLG00000026806
rosa_multiflora	Rmu_co8395535.1_g000001 Rmu_sc0002606.1_g000003 Rmu_sc0002606.1_g000005 Rmu_sc0010519.1_g000004 Rmu_sc0023430.1_g000002
rosa_roxburghii	Rroxscaffold_4G00284050 Rroxscaffold_5G00353230
rosa_rugosa	Rorug01G0379200
rosa_samantha	Rh1AG388500 Rh1BG352900 Rh1CG365800 Rh1DG383300 Rh3AG266200 Rh3DG308600
rosa_wichuraiana	Rw1G034670 Rw3G029530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	162, 2387
Acc36I	ACCTGC	1 cut(s)	4066
AccB7I	CCANNNNNTGG	4 cut(s)	1067, 2773, 3240, 4096
AccBSI	CCGCTC	2 cut(s)	193, 1208
AccI	GTMKAC	3 cut(s)	54, 1790, 4525
AciI	CCGC	7 cut(s)	76, 120, 193, 1208, 3973, 4955, 5330
AclWI	GGATC	5 cut(s)	373, 3585, 3992, 4384, 4882
AcoI	YGGCCR	4 cut(s)	1496, 1575, 4234, 5028
AcuI	CTGAAG	9 cut(s)	875, 882, 1163, 2897, 2904, 3684, 3795, 4498, 5609
AdeI	CACNNNGTG	3 cut(s)	2073, 3566, 5771
AfeI	AGCGCT	2 cut(s)	3861, 5502
AflII	CTTAAG	2 cut(s)	4319, 4813
AgeI	ACCGGT	1 cut(s)	4488
AhdI	GACNNNNNGTC	3 cut(s)	1107, 1228, 5653
AhlI	ACTAGT	1 cut(s)	1586
AjiI	CACGTC	1 cut(s)	3103
AjnI	CCWGG	6 cut(s)	1549, 2139, 2253, 3272, 4746, 5313
AloI	GAACNNNNNNTCC	2 cut(s)	2885, 2917
Alw21I	GWGCWC	7 cut(s)	333, 418, 2052, 3057, 3284, 4854, 5948
Alw26I	GTCTC	6 cut(s)	425, 1963, 4087, 4447, 5201, 5349
Alw44I	GTGCAC	1 cut(s)	3053
AlwI	GGATC	5 cut(s)	373, 3585, 3992, 4384, 4882
AlwNI	CAGNNNCTG	5 cut(s)	1067, 3307, 4096, 4888, 5711
Ama87I	CYCGRG	2 cut(s)	353, 4001
Aor51HI	AGCGCT	2 cut(s)	3861, 5502
ApaLI	GTGCAC	1 cut(s)	3053
ArsI	GACNNNNNNTTYG	2 cut(s)	128, 160
AseI	ATTAAT	5 cut(s)	461, 845, 2358, 3384, 5009
AsiGI	ACCGGT	1 cut(s)	4488
Asp700I	GAANNNNTTC	4 cut(s)	709, 2124, 2526, 5865
AspLEI	GCGC	4 cut(s)	523, 3862, 4012, 5503
AspS9I	GGNCC	9 cut(s)	78, 2389, 2480, 2764, 3200, 3250, 4616, 5779, 5797
AsuC2I	CCSGG	1 cut(s)	819
AsuHPI	GGTGA	7 cut(s)	1699, 1808, 1982, 3970, 4727, 4915, 5969
AsuNHI	GCTAGC	1 cut(s)	793
AvaI	CYCGRG	2 cut(s)	353, 4001
AvaII	GGWCC	6 cut(s)	2389, 2480, 2764, 3250, 4616, 5779
BaeGI	GKGCMC	2 cut(s)	3057, 3412
BalI	TGGCCA	4 cut(s)	1498, 1577, 4236, 5030
BanII	GRGCYC	1 cut(s)	333
BarI	GAAGNNNNNNTAC	2 cut(s)	3203, 3235
BauI	CACGAG	1 cut(s)	4671
BbsI	GAAGAC	9 cut(s)	1103, 1772, 2127, 2144, 2168, 2814, 2885, 4334, 5967
Bbv12I	GWGCWC	7 cut(s)	333, 418, 2052, 3057, 3284, 4854, 5948
BceAI	ACGGC	5 cut(s)	134, 406, 660, 3187, 5103
BcgI	CGANNNNNNTGC	2 cut(s)	536, 570
BciT130I	CCWGG	6 cut(s)	1551, 2141, 2255, 3274, 4748, 5315
BciVI	GTATCC	1 cut(s)	4687
BclI	TGATCA	5 cut(s)	630, 921, 2506, 4602, 4879
BcnI	CCSGG	1 cut(s)	819
BcoDI	GTCTC	6 cut(s)	425, 1963, 4087, 4447, 5201, 5349
BcuI	ACTAGT	1 cut(s)	1586
BfmI	CTRYAG	7 cut(s)	1617, 1806, 1950, 3588, 3638, 5277, 5712
BfoI	RGCGCY	3 cut(s)	524, 3863, 5504
BfrI	CTTAAG	2 cut(s)	4319, 4813
BfuAI	ACCTGC	1 cut(s)	4066
BfuI	GTATCC	1 cut(s)	4687
BglII	AGATCT	1 cut(s)	4365
BlpI	GCTNAGC	1 cut(s)	2453
BmcAI	AGTACT	3 cut(s)	302, 359, 1266
Bme1390I	CCNGG	7 cut(s)	819, 1551, 2141, 2255, 3274, 4748, 5315
Bme18I	GGWCC	6 cut(s)	2389, 2480, 2764, 3250, 4616, 5779
BmeRI	GACNNNNNGTC	3 cut(s)	1107, 1228, 5653
BmeT110I	CYCGRG	2 cut(s)	353, 4001
BmgBI	CACGTC	1 cut(s)	3103
BmgT120I	GGNCC	9 cut(s)	78, 2389, 2480, 2764, 3200, 3250, 4616, 5779, 5797
BmiI	GGNNCC	6 cut(s)	197, 2802, 3142, 3201, 4493, 4618
BmrFI	CCNGG	7 cut(s)	819, 1551, 2141, 2255, 3274, 4748, 5315
BmrI	ACTGGG	2 cut(s)	16, 4194
BmtI	GCTAGC	1 cut(s)	797
BmuI	ACTGGG	2 cut(s)	16, 4194
BpiI	GAAGAC	9 cut(s)	1103, 1772, 2127, 2144, 2168, 2814, 2885, 4334, 5967
BplI	GAGNNNNNCTC	2 cut(s)	3175, 3207
BpmI	CTGGAG	7 cut(s)	2738, 2787, 3380, 4073, 5396, 5427, 5607
Bpu10I	CCTNAGC	2 cut(s)	1482, 1994
Bpu1102I	GCTNAGC	1 cut(s)	2453
BpuEI	CTTGAG	6 cut(s)	188, 325, 329, 752, 3998, 5909
BpuMI	CCSGG	1 cut(s)	819
BsaBI	GATNNNNATC	1 cut(s)	1188
BsaI	GGTCTC	2 cut(s)	425, 5349
BsaJI	CCNNGG	7 cut(s)	1122, 1631, 3148, 4620, 4746, 5291, 5479
BsaWI	WCCGGW	1 cut(s)	4488
BsaXI	ACNNNNNCTCC	6 cut(s)	799, 829, 2885, 2915, 4257, 4287
Bse118I	RCCGGY	2 cut(s)	4488, 4722
Bse3DI	GCAATG	4 cut(s)	554, 2617, 3631, 3975
Bse8I	GATNNNNATC	1 cut(s)	1188
BseBI	CCWGG	6 cut(s)	1551, 2141, 2255, 3274, 4748, 5315
BseDI	CCNNGG	7 cut(s)	1122, 1631, 3148, 4620, 4746, 5291, 5479
BseJI	GATNNNNATC	1 cut(s)	1188
BseMI	GCAATG	4 cut(s)	554, 2617, 3631, 3975
BseRI	GAGGAG	1 cut(s)	5651
BseSI	GKGCMC	2 cut(s)	3057, 3412
BseYI	CCCAGC	1 cut(s)	5604
BsgI	GTGCAG	4 cut(s)	537, 563, 2748, 2909
BshTI	ACCGGT	1 cut(s)	4488
BsiHKAI	GWGCWC	7 cut(s)	333, 418, 2052, 3057, 3284, 4854, 5948
BsiHKCI	CYCGRG	2 cut(s)	353, 4001
BsiSI	CCGG	4 cut(s)	819, 4489, 4723, 5129
BslFI	GGGAC	3 cut(s)	4, 2954, 3200
BsmAI	GTCTC	6 cut(s)	425, 1963, 4087, 4447, 5201, 5349
BsmBI	CGTCTC	1 cut(s)	5201
BsmFI	GGGAC	3 cut(s)	4, 2954, 3200
BsmI	GAATGC	3 cut(s)	1366, 5028, 5641
Bso31I	GGTCTC	2 cut(s)	425, 5349
BsoBI	CYCGRG	2 cut(s)	353, 4001
Bsp1286I	GDGCHC	8 cut(s)	333, 418, 2052, 3057, 3284, 3412, 4854, 5948
Bsp1407I	TGTACA	2 cut(s)	387, 5386
Bsp1720I	GCTNAGC	1 cut(s)	2453
BspACI	CCGC	7 cut(s)	76, 120, 193, 1208, 3973, 4955, 5330
BspHI	TCATGA	1 cut(s)	4191
BspLI	GGNNCC	6 cut(s)	197, 2802, 3142, 3201, 4493, 4618
BspMAI	CTGCAG	5 cut(s)	1621, 1954, 3642, 5281, 5716
BspMI	ACCTGC	1 cut(s)	4066
BspOI	GCTAGC	1 cut(s)	797
BspPI	GGATC	5 cut(s)	373, 3585, 3992, 4384, 4882
BspTI	CTTAAG	2 cut(s)	4319, 4813
BspTNI	GGTCTC	2 cut(s)	425, 5349
BsrBI	CCGCTC	2 cut(s)	193, 1208
BsrDI	GCAATG	4 cut(s)	554, 2617, 3631, 3975
BsrFI	RCCGGY	2 cut(s)	4488, 4722
BsrGI	TGTACA	2 cut(s)	387, 5386
BssAI	RCCGGY	2 cut(s)	4488, 4722
BssECI	CCNNGG	7 cut(s)	1122, 1631, 3148, 4620, 4746, 5291, 5479
BssSI	CACGAG	1 cut(s)	4671
BssT1I	CCWWGG	5 cut(s)	1122, 1631, 3148, 4620, 5479
Bst2BI	CACGAG	1 cut(s)	4671
Bst2UI	CCWGG	6 cut(s)	1551, 2141, 2255, 3274, 4748, 5315
Bst6I	CTCTTC	7 cut(s)	107, 858, 2232, 2517, 3176, 4026, 4510
BstAFI	CTTAAG	2 cut(s)	4319, 4813
BstAPI	GCANNNNNTGC	4 cut(s)	1889, 2579, 3991, 5711
BstAUI	TGTACA	2 cut(s)	387, 5386
BstEII	GGTNACC	1 cut(s)	5069
BstENI	CCTNNNNNAGG	1 cut(s)	932
BstH2I	RGCGCY	3 cut(s)	524, 3863, 5504
BstHHI	GCGC	4 cut(s)	523, 3862, 4012, 5503
BstMAI	GTCTC	6 cut(s)	425, 1963, 4087, 4447, 5201, 5349
BstNI	CCWGG	6 cut(s)	1551, 2141, 2255, 3274, 4748, 5315
BstNSI	RCATGY	6 cut(s)	1335, 1527, 2756, 3809, 4166, 5476
BstPI	GGTNACC	1 cut(s)	5069
BstSCI	CCNGG	7 cut(s)	817, 1549, 2139, 2253, 3272, 4746, 5313
BstSFI	CTRYAG	7 cut(s)	1617, 1806, 1950, 3588, 3638, 5277, 5712
BstSLI	GKGCMC	2 cut(s)	3057, 3412
BstV2I	GAAGAC	9 cut(s)	1103, 1772, 2127, 2144, 2168, 2814, 2885, 4334, 5967
BstX2I	RGATCY	5 cut(s)	378, 3577, 3997, 4365, 4874
BstXI	CCANNNNNNTGG	1 cut(s)	1573
BstYI	RGATCY	5 cut(s)	378, 3577, 3997, 4365, 4874
BsuI	GTATCC	1 cut(s)	4687
BtgZI	GCGATG	1 cut(s)	1958
BtrI	CACGTC	1 cut(s)	3103
BtsI	GCAGTG	5 cut(s)	2736, 3305, 4572, 5712, 5776
BveI	ACCTGC	1 cut(s)	4066
CaiI	CAGNNNCTG	5 cut(s)	1067, 3307, 4096, 4888, 5711
CciI	TCATGA	1 cut(s)	4191
CfoI	GCGC	4 cut(s)	523, 3862, 4012, 5503
Cfr10I	RCCGGY	2 cut(s)	4488, 4722
Cfr13I	GGNCC	9 cut(s)	78, 2389, 2480, 2764, 3200, 3250, 4616, 5779, 5797
CseI	GACGC	4 cut(s)	6, 1681, 2676, 2819
CspAI	ACCGGT	1 cut(s)	4488
DraIII	CACNNNGTG	3 cut(s)	2073, 3566, 5771
DrdI	GACNNNNNNGTC	2 cut(s)	162, 2387
DriI	GACNNNNNGTC	3 cut(s)	1107, 1228, 5653
DseDI	GACNNNNNNGTC	2 cut(s)	162, 2387
EaeI	YGGCCR	4 cut(s)	1496, 1575, 4234, 5028
Eam1104I	CTCTTC	7 cut(s)	107, 858, 2232, 2517, 3176, 4026, 4510
Eam1105I	GACNNNNNGTC	3 cut(s)	1107, 1228, 5653
EarI	CTCTTC	7 cut(s)	107, 858, 2232, 2517, 3176, 4026, 4510
Ecl136II	GAGCTC	1 cut(s)	331
Eco130I	CCWWGG	5 cut(s)	1122, 1631, 3148, 4620, 5479
Eco24I	GRGCYC	1 cut(s)	333
Eco31I	GGTCTC	2 cut(s)	425, 5349
Eco32I	GATATC	5 cut(s)	127, 1801, 2082, 3328, 3511
Eco47I	GGWCC	6 cut(s)	2389, 2480, 2764, 3250, 4616, 5779
Eco47III	AGCGCT	2 cut(s)	3861, 5502
Eco53kI	GAGCTC	1 cut(s)	331
Eco57I	CTGAAG	9 cut(s)	875, 882, 1163, 2897, 2904, 3684, 3795, 4498, 5609
Eco88I	CYCGRG	2 cut(s)	353, 4001
Eco91I	GGTNACC	1 cut(s)	5069
EcoICRI	GAGCTC	1 cut(s)	331
EcoNI	CCTNNNNNAGG	1 cut(s)	932
EcoO65I	GGTNACC	1 cut(s)	5069
EcoRI	GAATTC	2 cut(s)	2545, 2929
EcoRII	CCWGG	6 cut(s)	1549, 2139, 2253, 3272, 4746, 5313
EcoRV	GATATC	5 cut(s)	127, 1801, 2082, 3328, 3511
EcoT14I	CCWWGG	5 cut(s)	1122, 1631, 3148, 4620, 5479
EcoT22I	ATGCAT	4 cut(s)	442, 595, 1292, 4164
EcoT38I	GRGCYC	1 cut(s)	333
ErhI	CCWWGG	5 cut(s)	1122, 1631, 3148, 4620, 5479
Esp3I	CGTCTC	1 cut(s)	5201
FaqI	GGGAC	3 cut(s)	4, 2954, 3200
FauNDI	CATATG	1 cut(s)	3501
FbaI	TGATCA	5 cut(s)	630, 921, 2506, 4602, 4879
FblI	GTMKAC	3 cut(s)	54, 1790, 4525
FriOI	GRGCYC	1 cut(s)	333
GlaI	GCGC	4 cut(s)	522, 3861, 4011, 5502
GsaI	CCCAGC	1 cut(s)	5608
GsuI	CTGGAG	7 cut(s)	2738, 2787, 3380, 4073, 5396, 5427, 5607
HaeII	RGCGCY	3 cut(s)	524, 3863, 5504
HapII	CCGG	4 cut(s)	819, 4489, 4723, 5129
HgaI	GACGC	4 cut(s)	6, 1681, 2676, 2819
HhaI	GCGC	4 cut(s)	523, 3862, 4012, 5503
Hin6I	GCGC	4 cut(s)	521, 3860, 4010, 5501
HinP1I	GCGC	4 cut(s)	521, 3860, 4010, 5501
HincII	GTYRAC	3 cut(s)	55, 2317, 5123
HindII	GTYRAC	3 cut(s)	55, 2317, 5123
HindIII	AAGCTT	3 cut(s)	2849, 3212, 4316
HpaII	CCGG	4 cut(s)	819, 4489, 4723, 5129
HphI	GGTGA	7 cut(s)	1699, 1808, 1982, 3970, 4727, 4915, 5969
Hpy99I	CGWCG	3 cut(s)	70, 191, 1080
HpyCH4IV	ACGT	4 cut(s)	2061, 2124, 3076, 3102
HpySE526I	ACGT	4 cut(s)	2061, 2124, 3076, 3102
HspAI	GCGC	4 cut(s)	521, 3860, 4010, 5501
KroI	GCCGGC	1 cut(s)	4722
KroNI	GCCGGC	1 cut(s)	4724
Ksp22I	TGATCA	5 cut(s)	630, 921, 2506, 4602, 4879
MaeII	ACGT	4 cut(s)	2061, 2124, 3076, 3102
MbiI	CCGCTC	2 cut(s)	193, 1208
MfeI	CAATTG	2 cut(s)	2786, 3690
MflI	RGATCY	5 cut(s)	378, 3577, 3997, 4365, 4874
MhlI	GDGCHC	8 cut(s)	333, 418, 2052, 3057, 3284, 3412, 4854, 5948
MlsI	TGGCCA	4 cut(s)	1498, 1577, 4236, 5030
MluNI	TGGCCA	4 cut(s)	1498, 1577, 4236, 5030
MmeI	TCCRAC	3 cut(s)	975, 2654, 4017
Mox20I	TGGCCA	4 cut(s)	1498, 1577, 4236, 5030
Mph1103I	ATGCAT	4 cut(s)	442, 595, 1292, 4164
MroNI	GCCGGC	1 cut(s)	4722
MroXI	GAANNNNTTC	4 cut(s)	709, 2124, 2526, 5865
MscI	TGGCCA	4 cut(s)	1498, 1577, 4236, 5030
MslI	CAYNNNNRTG	3 cut(s)	1383, 1571, 4359
Msp20I	TGGCCA	4 cut(s)	1498, 1577, 4236, 5030
MspA1I	CMGCKG	1 cut(s)	884
MspCI	CTTAAG	2 cut(s)	4319, 4813
MspI	CCGG	4 cut(s)	819, 4489, 4723, 5129
MspR9I	CCNGG	7 cut(s)	819, 1551, 2141, 2255, 3274, 4748, 5315
MunI	CAATTG	2 cut(s)	2786, 3690
Mva1269I	GAATGC	3 cut(s)	1366, 5028, 5641
MvaI	CCWGG	6 cut(s)	1551, 2141, 2255, 3274, 4748, 5315
NaeI	GCCGGC	1 cut(s)	4724
NciI	CCSGG	1 cut(s)	819
NdeI	CATATG	1 cut(s)	3501
NgoMIV	GCCGGC	1 cut(s)	4722
NheI	GCTAGC	1 cut(s)	793
NlaIV	GGNNCC	6 cut(s)	197, 2802, 3142, 3201, 4493, 4618
NsiI	ATGCAT	4 cut(s)	442, 595, 1292, 4164
NspI	RCATGY	6 cut(s)	1335, 1527, 2756, 3809, 4166, 5476
PacI	TTAATTAA	1 cut(s)	465
PaeI	GCATGC	3 cut(s)	1527, 3809, 4166
PaeR7I	CTCGAG	1 cut(s)	353
PagI	TCATGA	1 cut(s)	4191
PctI	GAATGC	3 cut(s)	1366, 5028, 5641
PdiI	GCCGGC	1 cut(s)	4724
PdmI	GAANNNNTTC	4 cut(s)	709, 2124, 2526, 5865
PflFI	GACNNNGTC	3 cut(s)	2670, 4304, 5777
PflMI	CCANNNNNTGG	4 cut(s)	1067, 2773, 3240, 4096
PfoI	TCCNGGA	1 cut(s)	817
PinAI	ACCGGT	1 cut(s)	4488
PshBI	ATTAAT	5 cut(s)	461, 845, 2358, 3384, 5009
Psp124BI	GAGCTC	1 cut(s)	333
Psp6I	CCWGG	6 cut(s)	1549, 2139, 2253, 3272, 4746, 5313
PspEI	GGTNACC	1 cut(s)	5069
PspFI	CCCAGC	1 cut(s)	5604
PspGI	CCWGG	6 cut(s)	1549, 2139, 2253, 3272, 4746, 5313
PspN4I	GGNNCC	6 cut(s)	197, 2802, 3142, 3201, 4493, 4618
PspPI	GGNCC	9 cut(s)	78, 2389, 2480, 2764, 3200, 3250, 4616, 5779, 5797
PsrI	GAACNNNNNNTAC	2 cut(s)	1527, 1559
PstI	CTGCAG	5 cut(s)	1621, 1954, 3642, 5281, 5716
PstNI	CAGNNNCTG	5 cut(s)	1067, 3307, 4096, 4888, 5711
PsuI	RGATCY	5 cut(s)	378, 3577, 3997, 4365, 4874
PsyI	GACNNNGTC	3 cut(s)	2670, 4304, 5777
PvuII	CAGCTG	1 cut(s)	884
RseI	CAYNNNNRTG	3 cut(s)	1383, 1571, 4359
SacI	GAGCTC	1 cut(s)	333
SalI	GTCGAC	1 cut(s)	53
Sau96I	GGNCC	9 cut(s)	78, 2389, 2480, 2764, 3200, 3250, 4616, 5779, 5797
SbfI	CCTGCAGG	1 cut(s)	5281
ScaI	AGTACT	3 cut(s)	302, 359, 1266
ScrFI	CCNGG	7 cut(s)	819, 1551, 2141, 2255, 3274, 4748, 5315
SdaI	CCTGCAGG	1 cut(s)	5281
SduI	GDGCHC	8 cut(s)	333, 418, 2052, 3057, 3284, 3412, 4854, 5948
SfcI	CTRYAG	7 cut(s)	1617, 1806, 1950, 3588, 3638, 5277, 5712
Sfr274I	CTCGAG	1 cut(s)	353
SinI	GGWCC	6 cut(s)	2389, 2480, 2764, 3250, 4616, 5779
SlaI	CTCGAG	1 cut(s)	353
SmiMI	CAYNNNNRTG	3 cut(s)	1383, 1571, 4359
SmlI	CTYRAG	9 cut(s)	167, 304, 344, 353, 731, 4013, 4319, 4813, 5888
SmoI	CTYRAG	9 cut(s)	167, 304, 344, 353, 731, 4013, 4319, 4813, 5888
SpeI	ACTAGT	1 cut(s)	1586
SphI	GCATGC	3 cut(s)	1527, 3809, 4166
Sse8387I	CCTGCAGG	1 cut(s)	5281
SsiI	CCGC	7 cut(s)	76, 120, 193, 1208, 3973, 4955, 5330
SspI	AATATT	3 cut(s)	1897, 2491, 3881
SstI	GAGCTC	1 cut(s)	333
StyD4I	CCNGG	7 cut(s)	817, 1549, 2139, 2253, 3272, 4746, 5313
StyI	CCWWGG	5 cut(s)	1122, 1631, 3148, 4620, 5479
TaiI	ACGT	4 cut(s)	2064, 2127, 3079, 3105
TatI	WGTACW	7 cut(s)	300, 357, 387, 727, 1264, 3655, 5386
TauI	GCSGC	3 cut(s)	79, 122, 1211
TspGWI	ACGGA	6 cut(s)	1784, 3072, 3129, 3749, 5643, 5771
Tth111I	GACNNNGTC	3 cut(s)	2670, 4304, 5777
Van91I	CCANNNNNTGG	4 cut(s)	1067, 2773, 3240, 4096
Vha464I	CTTAAG	2 cut(s)	4319, 4813
VneI	GTGCAC	1 cut(s)	3053
VpaK11BI	GGWCC	6 cut(s)	2389, 2480, 2764, 3250, 4616, 5779
VspI	ATTAAT	5 cut(s)	461, 845, 2358, 3384, 5009
XagI	CCTNNNNNAGG	1 cut(s)	932
XbaI	TCTAGA	2 cut(s)	4471, 5632
XceI	RCATGY	6 cut(s)	1335, 1527, 2756, 3809, 4166, 5476
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1588, 2867
XhoI	CTCGAG	1 cut(s)	353
XmiI	GTMKAC	3 cut(s)	54, 1790, 4525
XmnI	GAANNNNTTC	4 cut(s)	709, 2124, 2526, 5865
ZrmI	AGTACT	3 cut(s)	302, 359, 1266
Zsp2I	ATGCAT	4 cut(s)	442, 595, 1292, 4164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.