Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002105

Physical Location & Seq

Genomic Coordinates Reverse (-)

5775131 .. 5789362

Gene Structure 14232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00284050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 6273 bp

ATGGCGACCTCGATTGCGTCCCAGTTAAAAGTCCTGAAATCGCTGATACAAGTCGACCAAGACCCGTCGCAGAAGCGGCCCTTCACTCGCCCTTCCATCCTCTTCGACCCCAAAGAGGCCGCCGATATCGACATCGACACAATTTTCGCCGTAGGACTTCAAGGTCTTGAGCTTCTTGTTAGTACCGACGAGCGGTTCCGAAACTTTAAGAGTGACTTGTTCAGCTACCAGAGTAAGGAATTGGATAGAGAGTTGATGGGAGTAGAGGAAAACAAACGCATTGATGCTTCGATTAGTAAGTACTTGAGATTGCTGTCAGGGCATTTCGAGCTCCCATCGTCACTCAAGACTCTCGAGTACTTGGTGCGAAGATATAAGATTCATGTGTACAACTACGAGGAATTGATTTTGTGTGCTCTGCCGTACCATGAGACCCACGCATTTGTTAAAATTGTTCAATTAGTTAACTTCGGAAATAGCAAGTGGAAATTTTTAGAGGGCGTGAAAGTTTCTGGTGCAGCGCCACCTAGAAATGTTATTGTGCAGCAATGTATTCGTGACATGGGGGTTTTGGAGGCTTTATTCGACTATGTATCCCCATCAAAGAAGTATCGGCCTTCAAAGCCCGTGATCAGATTTTGCACGGCAGTTGTTGTTGAGGTTTTGGGTTCTGTTGCATCTGTTGAAAGTCATGTTGTGAAAAGAATCTGTTCACTTATTTATTCTGTACTTGAGGTTGGCACGGATGGACATTCAGAAAACAAGGCTGGTGCTATGATGATTGTTGGTATGCTAGCAAGTAAAGTTACAATATCTCCCGGACTTGTCAAGGGATTGATTTTATTAATTGCTAAAGTTGCTGAAGAGGATGCAAAAGAGTCAGCTGATCTTCAGCTTTTTCACTTATCACTTATGACTTTGATCAACCTTGTTCAGTTGCAAGTTGTGGATAAGTTTCCCATGAAGGCTCTGAAGAGTTTGATCGGCATTAGGGATTTTGCTGGCATCCTTCTGGGACTTTTCAACAAGTTCAAAATTGATAGATTCCTTTCCGTGCTTTTGGATTCTCTTGTTGACTATAGTTCGTCTGATGAATCTTGCCAGCTTGCGTTGATCTCCATATTAGATACAGTTCCTTCCAAGAATTTTGTTCATCATGTAGTTCCAAAGGTCCTATCTTCCTGCTTGCAAAAGTCACAGGACATGGAAAATTCAACATTATTTTCATCAGGAAGCTGGGCAGAGAAAGTTTTACTCATTCTTAGAAGATATCCATCTGAACTGCATGGAGCTGCTCACAAATTTCTGGAAAAGAATGTGCAATCTAAGAAACGGGGTTCGGTACATGAAGCTCTGCGTAAAATGTTGGATGGGAATTTGGACAGGTCACTAGCTTGCTCAGAATCAAATTTTTGGTTCAGGTTGCATCATCCGGAGGCTGATGTTCGTCGCCGTACACTTTCTGAAATAAGGACATCAGGTCTTCTGGAAGCCAAGGGTACAAATTCGCAGAGTCTTGTAATCATCCAAGATGGCATATTGCGACAGCTTCAGGATGATGATCTTAGCGTTGTCAGAGCCGCTTTGTCGTTAGACAGATTGTCCAGTTTAATAAACCCATCTGATCTTATTGAAGTACTGGATAATCTGCTTAGAAGATGCATTGGTCTTTTAGCAAGTTCATTGGAGAACTATAGCCTACCATGTGATGTTGCTATTTTGTGCCTAAAGAATGCTGTTGCTGACATCCATGAGAATGTTGAACGTTGCAATAAACTAGCTGCTATGATATTTCCTGTGCTCCTTGTTGTACCTAAGACACAGAGGTTAAATTTGAAAGCATTGGAATTAGCTAAGGCAGTAAAATGGCCACTGTTTGAGAATCTTGCTGCTGCATGCGATACAGAACAAACATTACAACCAGGAAAGTTATCCTCCATTAACATGGCCACCATTACTAGTTTGGCGAGCAGATTCTTGTTGCACCCAGCAGAATTTATGCCTTGGCTTGTTCAGAGTTCTAATGACTTTGAGTTGTCAAAGACGCACTTCTTTTTGGTGATGATGCAGACAATTCTGATTGAGAAGGAATCTGCTGAATGTTTGGAACTTTTTGAAGTTTTGTTTCCTGCATTGAAGACGGAATGGGAATCATTTGAGTCTATGGGTGATATCTCTATAGCAGAGTTCAAAACAGAGATGCTGAATTGGGATTGCAGCAGATTTCTTGATAAGCTAGATTCCAATTTGAAAGCAATAAATGCAAATATTCTAATTTGCATCTTTTGGAGGTTGATGGAGGCATTTCTATCTGCGATGCCTGCAGATGTCTCATTGGATGGTGATGGGAAGTGGGTTAGCTGGCTCAGGGAATTGTTCGCCTTCTTCTCAGGCTGTCAGTTTAAGAACATATTTAAGGAGCACCGTCATTACGTTGTCACAAAGTGCAAGATATCTGCTGTTTCTTTCCTTGCCAAGTTTTTCACAGAAGAAGACGTTCCTGTTGCAGTCCAGGCCGAGAGTCTTCACTGTTTTTCCTATCTGTGTCTTCAATCAGAAGTTAGATTGCCAATTCAATTTCTTGCTGAATTTCCATCTCTTCTTGTTCCACTGGCTAGTTGTAACCAGGAGATAAGAAATGTTGCCATGAATTGTATTGAGGGTTTACAGACCTTTTCATCTCATGTTGACTCTTTGAGCAAGAAAAATGGAAACCGTGCAATTCGGATTAATCATCTTGATAAGTTGCTGGACTTGTTGGTCCAGCAGAAAAGGCTAATCCTATCGGACAGGAACTTGCTTCCTTCTCTCTTGGCCTCTTTGCTCAGCCCGTCCTTCCAGAGCTTCTTAGGACCAAAGAATATTGAGATAAGGTTTGATCAATCTACAAGAGAAGAGATTCTTACTTTCATGTTGAATTCTGCCATGAAGCTGCCTGATTATGCAAGGCTTGCTATTCTTTCTTTGCTCAGAGGAACAGGCAATGCCATTATACATCATAAAGAAGTTAAGTCATATTTATCTCATCTCTTGGAAAGACGCAGTCAGAGTTTGTCAAAAATTGAAGTTCAGATATTATGCCTTCTACTGGAGTGCTGTGCAGTGCCTTCTTCATCGGACGGGCATGTATTTGAGGACCATTTATTGGAGGCTTTGCAATTGGATGGCTTGGCTCCAGAAGACGCTTCCACCATACAGCCTTGTATTACTGTCCTGCAAAAGCTTAACAGCCAAATTTACAGTGGACTGAAGACAGAAGTGCAGGAGCTTTTGTTCCGAAAACTGGTAGCTGTGTTTCAGAATTCAAATGGGGACATACAAAATGCAACTAGAGCAGCCTTGCAGCGTTTACATATTACTTGCTCCACTATCGTCCACACTCTCGATCACATACTCAAAGATGGAAGTTGTGCAAGTCGTTCAGTGCACGGAACAAAGAAAATGAAACGTCAGAAGTCCACTTCGTCTAGTGACGTGATACGTGACGGAGAAAATGCACTCTCTTTACTTGGTTCCCTCCTTGGTATTTTATTATTTAAGAAAGACATAGAGAAGAGGGACTCTCTATTGGGGCCGTTGTTTAAGCTTCTTTACAAAACCTTTTCCAATGAGTGGGTACAGGACCACTTTAGCGTTTCTGATACCAGGTTGAGCACAGTAAATTACATACAACAGACACTGCTGATAATCTTAGAAGATATCAGTTCTTCACTAATAAGTTCTATTCCACTGGAGGACAACATGGTAAATGAGATTAATGTCAAACATTTGGTTGAGTGTGCCCATTCTGCGAAGGATGGAGTTACTCGCAACCATGTCTTTTCACTGATTTCCTCCATCACAAAGATCGTTCCAGAAAAAGTTTTGGAGCATATGCTGGATATCTTTGCTGTTATTGGAGAGTCAGCAGTCACACAGATTGATAGCCATTCACAGCGTGTGTTTGAGGATCTTTTATCTACAGTTGTTCCTTGTTGGCTGTCTGGGGCAGGCAGCAATGACAAATTGCTGCAGATTTTTGTTAATGTACTGCCTGAAGTTGCTGAATATAGAAGGCTATCAATTGTTGTGTACCTACTGAGGACTTTGGGAGAGTCAAATAGCTTGGCTTCATTACTTGTTCTTCTTTTCCGTTCACTAATTTCAAGAAAAGGGTCATCTTGGTTTGATAATGTGCATGCTTCAGATAGCTCCACAACCTCTTTACAGAGAGAGTGGGAGTATGCCCTAGCGCTTCAAATATGTGAGCAATATTCATGTATGATATGGCTTCCCCCTCTTGTTATGCTGCTTAAACAAATGGAAACTGGTCAAGAGGTATTTAGAGAATTGTTAATTGCAATGCGGTTCACCTTGCATAAGCTGCAAGATCCCGAGTTTGCGCTCAAGATGGCATCTGGGGAAGAGTCGGACAAAATTCAGGCTACATTGGGAGAACTCATGGAGCAGGTTGTCTCTCTCCAGCAACTGGTAGATGCAAGAAGGAAGGATAAAAATATCAATGTCATTAGGAAAGATTTGAAGGAGTGTGTGCATGCGGTAATGAGGGCTATTACTGGGGTCATGAACCCTTCGACACTCTTTAATGGCATAACTAAGTTGCTTGGCCACAGAGATCAAAATGTGGAAAAGAAGGCACTTGGACTCCTATGTGAAACCATTAGGAATCTTGACACGGTCAAAGCAAAGCTTAAGTTTAATAAAAGTTGTAGTCTTCATTGGCATCATCTTGATGAGATCTCTCTTGGATCGTTGCGAGTTATGTGTATGAAAATTGTTCAGTTAATTGATGATTCTTCTGATGATTTGGAAGTCTCCTTGAAAGTGGCAGCAGCTTTGGCTCTAGAAGTTTTAGCCCATCGGTTCCCTTCTAACTCTTCCATCTTCAGTGAGTGTCTACCATCTGTTACAAAAGCACTCTCTGAGCTTCCTCACATAATGGATAGTTTGATTAAGATTTCTCGTGAAGTCCTTGTATCCTCGGATACAAAAGCCATATCCAGTGGTGATAGCCGGCTTGTTGTGTTACAAAAACCCCAGGAATCTCTTATTCTGTCTATTCTTGTTACTTTGGAGGCTGTTTTGGTTAAGCTAGGGCAGTTCTTAAGCCCATATCTTGAAGATATTACAAGAGTTATGGTGCTCGATCTTGATTATGCGTTAGGATCTGATCAGAAGCTGAAAATGCGAGCTGATTCAGTACGAAAGCTCATCACCGAGAACATCACAGTTCGTCTTGCTCTACCGCCCTTGCTAAACATATACTCTAGCACAGTTGAGTCTGGGGATTCCAGTTTATTAATTTATTTTGGAATGCTGGCCAACATGATTGGAAGAATGGATAGAACATCTGTTGGTGGTTACCATGCTAAGATTTTTGAACAGTGCTTGATTGCTCTTGATCTACGCCGTCAGCATCCAGCTTCTGTTCAAAGAATTGATGATGTAGAGAAAAGTGTATTCGCTGCAATGATTTCTCTCACTATGAAGCTCACTGAGACTATGTTTAGACCTCTTTTCATTAGGAGTATTGATTGGGCAAACTCAGATGTGGAAGATACTTCTTCTGCAGGATATATACCGAGGGCTATATCTTTCTATGGCCTGGTAAATAAACTTGCGGAAAACCATAGGTCTCTTTTTGTTCCTTATTTCAAATACTTGCTGGAGAATTGTGTACATTATCTTACTGTCGCTGGAGATGCAAAGCCTTCTGGTTTAACACGAAAGAAGAAGGCCAAGATTCAGGAATCCGATAACAGCATGTTCCTTGGAAACTGGCATCTTAGAGCGCTGGTCTTATCATCATTACATAAATGTTTTCTCTATGATATGGGAAGCATGAAGTTTCTTGATTCTTCCAATTTTCAGGTTCTACTGAAACCCATTGTTTCCCAGCTTGTTATAGAACCTCCAGTTTCTCTAGAGGAGCATTCTGACATTCCGTCTGTGAAAGAAGTTGATGAATTATTGGTTGTTTGTGTTGGTCAAATGGCTGTGACTGCAGGAAGTGATCTTCTATGGAAGCCCTTGAATTATGAGGTGCTGATGCAGACACGCAGTGACAAGGTCCGTGCAAGAATTTTGGGCCTGAGAATTATTAAATATCTTGTGGAGCATCTAAGAGAAGAATATCTGGTATTTGTTCCAGAAACAGTTCCCTTCTTTGCTGAGTTGCTTGAGGATGTCGAGCCTTCTGTTAAATCTCTGGCACAAGAAATCTTCAACGAACTGAGCACCATGACTGGTGAAGACCTCTCACAGTATATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006355 GO:0006356 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034455 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0045893 GO:0045935 GO:0045943 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

BP28CT U3snoRNP10

Protein Analysis

2090

Amino Acids

234.75

Weight (kDa)

6.32

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U3snoRNP10	PF12397	237 - 357	4.7e-15	U3 small nucleolar RNA-associated protein 10
ARM_At3g06530	PF24477	627 - 819	1.3e-80	At3g06530-like, ARM repeats
HEAT_HEATR1	PF23243	1333 - 1519	2.5e-65	HEATR1-like, HEAT repeats
BP28CT	PF08146	1786 - 1947	1.2e-39	BP28CT (NUC211) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06530 AT3G06530 AT3G06530 AT3G06530 AT3G06530
fragaria_vesca	FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990
malus_domestica	MD07G1249300.v1.1
prunus_persica	Prupe.2G273000_v2.0.a1 Prupe.2G273000_v2.0.a1 Prupe.2G273000_v2.0.a1
pyrus_communis	pycom01g18810 pycom01g18840 pycom05g24490 pycom07g22250 pycom07g22260
rosa_chinensis	RchiOBHm_Chr1g0373711 RchiOBHm_Chr1g0373721 RchiOBHm_Chr5g0059891 RchiOBHm_Chr7g0224071
rosa_laevigata	RLG00000026806
rosa_multiflora	Rmu_co8395535.1_g000001 Rmu_sc0002606.1_g000003 Rmu_sc0002606.1_g000005 Rmu_sc0010519.1_g000004 Rmu_sc0023430.1_g000002
rosa_roxburghii	Rroxscaffold_4G00284050 Rroxscaffold_5G00353230
rosa_rugosa	Rorug01G0379200
rosa_samantha	Rh1AG388500 Rh1BG352900 Rh1CG365800 Rh1DG383300 Rh3AG266200 Rh3DG308600
rosa_wichuraiana	Rw1G034670 Rw3G029530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	162, 2759
Acc36I	ACCTGC	1 cut(s)	4438
AccB7I	CCANNNNNTGG	3 cut(s)	3145, 3612, 4468
AccBSI	CCGCTC	1 cut(s)	193
AccI	GTMKAC	2 cut(s)	54, 4897
AccIII	TCCGGA	1 cut(s)	1432
AciI	CCGC	8 cut(s)	76, 120, 193, 1581, 4345, 4538, 5246, 5621
AclI	AACGTT	1 cut(s)	1765
AclWI	GGATC	4 cut(s)	3957, 4364, 4756, 5173
AcoI	YGGCCR	4 cut(s)	1868, 1947, 4606, 5319
AcuI	CTGAAG	8 cut(s)	875, 882, 992, 1535, 3269, 4056, 4167, 4870
AdeI	CACNNNGTG	3 cut(s)	2445, 3938, 6062
AfeI	AGCGCT	2 cut(s)	4233, 5793
AfiI	CCNNNNNNNGG	8 cut(s)	115, 192, 235, 3088, 3145, 3283, 3612, 4468
AflII	CTTAAG	2 cut(s)	4691, 5104
AhdI	GACNNNNNGTC	3 cut(s)	1479, 1600, 5944
AhlI	ACTAGT	1 cut(s)	1958
AjiI	CACGTC	1 cut(s)	3475
AjnI	CCWGG	6 cut(s)	1921, 2511, 2625, 3644, 5037, 5604
AloI	GAACNNNNNNTCC	2 cut(s)	3257, 3289
Alw21I	GWGCWC	8 cut(s)	333, 418, 1803, 2424, 3429, 3656, 5145, 6239
Alw26I	GTCTC	6 cut(s)	425, 2335, 4459, 4819, 5492, 5640
Alw44I	GTGCAC	1 cut(s)	3425
AlwI	GGATC	4 cut(s)	3957, 4364, 4756, 5173
AlwNI	CAGNNNCTG	4 cut(s)	3679, 4468, 5179, 5426
Ama87I	CYCGRG	2 cut(s)	353, 4373
Aor13HI	TCCGGA	1 cut(s)	1432
Aor51HI	AGCGCT	2 cut(s)	4233, 5793
ApaLI	GTGCAC	1 cut(s)	3425
ArsI	GACNNNNNNTTYG	2 cut(s)	128, 160
AseI	ATTAAT	4 cut(s)	845, 2730, 3756, 5300
Asp700I	GAANNNNTTC	4 cut(s)	709, 2496, 2898, 6156
AspLEI	GCGC	4 cut(s)	523, 4234, 4384, 5794
AspS9I	GGNCC	9 cut(s)	78, 1171, 2761, 2852, 3136, 3572, 3622, 6070, 6088
AsuC2I	CCSGG	1 cut(s)	819
AsuHPI	GGTGA	7 cut(s)	2071, 2180, 2354, 4342, 5018, 5206, 6260
AsuNHI	GCTAGC	1 cut(s)	793
AvaI	CYCGRG	2 cut(s)	353, 4373
AvaII	GGWCC	6 cut(s)	1171, 2761, 2852, 3136, 3622, 6070
BaeGI	GKGCMC	2 cut(s)	3429, 3784
BalI	TGGCCA	4 cut(s)	1870, 1949, 4608, 5321
BanII	GRGCYC	1 cut(s)	333
BauI	CACGAG	1 cut(s)	4962
BbsI	GAAGAC	9 cut(s)	1475, 2144, 2499, 2516, 2540, 3186, 3257, 4706, 6258
Bbv12I	GWGCWC	8 cut(s)	333, 418, 1803, 2424, 3429, 3656, 5145, 6239
BceAI	ACGGC	6 cut(s)	134, 406, 660, 1437, 3559, 5394
BcgI	CGANNNNNNTGC	2 cut(s)	536, 570
BciT130I	CCWGG	6 cut(s)	1923, 2513, 2627, 3646, 5039, 5606
BciVI	GTATCC	3 cut(s)	604, 4978, 4987
BclI	TGATCA	4 cut(s)	630, 921, 2878, 5170
BcnI	CCSGG	1 cut(s)	819
BcoDI	GTCTC	6 cut(s)	425, 2335, 4459, 4819, 5492, 5640
BcuI	ACTAGT	1 cut(s)	1958
BfmI	CTRYAG	8 cut(s)	1078, 1693, 2178, 2322, 3960, 4010, 5568, 6003
BfoI	RGCGCY	3 cut(s)	524, 4235, 5795
BfrI	CTTAAG	2 cut(s)	4691, 5104
BfuAI	ACCTGC	1 cut(s)	4438
BfuI	GTATCC	3 cut(s)	604, 4978, 4987
BglII	AGATCT	1 cut(s)	4737
BlpI	GCTNAGC	1 cut(s)	2825
BmcAI	AGTACT	3 cut(s)	302, 359, 1638
Bme1390I	CCNGG	7 cut(s)	819, 1923, 2513, 2627, 3646, 5039, 5606
Bme18I	GGWCC	6 cut(s)	1171, 2761, 2852, 3136, 3622, 6070
BmeRI	GACNNNNNGTC	3 cut(s)	1479, 1600, 5944
BmeT110I	CYCGRG	2 cut(s)	353, 4373
BmgBI	CACGTC	1 cut(s)	3475
BmgT120I	GGNCC	9 cut(s)	78, 1171, 2761, 2852, 3136, 3572, 3622, 6070, 6088
BmiI	GGNNCC	5 cut(s)	197, 3174, 3514, 3573, 4865
BmrFI	CCNGG	7 cut(s)	819, 1923, 2513, 2627, 3646, 5039, 5606
BmrI	ACTGGG	2 cut(s)	16, 4566
BmtI	GCTAGC	1 cut(s)	797
BmuI	ACTGGG	2 cut(s)	16, 4566
BpiI	GAAGAC	9 cut(s)	1475, 2144, 2499, 2516, 2540, 3186, 3257, 4706, 6258
BplI	GAGNNNNNCTC	2 cut(s)	3547, 3579
BpmI	CTGGAG	7 cut(s)	3110, 3159, 3752, 4445, 5687, 5718, 5898
Bpu10I	CCTNAGC	2 cut(s)	1854, 2366
Bpu1102I	GCTNAGC	1 cut(s)	2825
BpuEI	CTTGAG	6 cut(s)	188, 325, 329, 752, 4370, 6200
BpuMI	CCSGG	1 cut(s)	819
BsaAI	YACGTR	1 cut(s)	3482
BsaBI	GATNNNNATC	2 cut(s)	1273, 1560
BsaI	GGTCTC	2 cut(s)	425, 5640
BsaJI	CCNNGG	7 cut(s)	1494, 2003, 3520, 4980, 5037, 5582, 5770
BsaWI	WCCGGW	1 cut(s)	1432
BsaXI	ACNNNNNCTCC	6 cut(s)	799, 829, 3257, 3287, 4629, 4659
Bsc4I	CCNNNNNNNGG	8 cut(s)	115, 192, 235, 3088, 3145, 3283, 3612, 4468
Bse118I	RCCGGY	1 cut(s)	5013
Bse3DI	GCAATG	5 cut(s)	554, 2989, 4003, 4347, 5475
Bse8I	GATNNNNATC	2 cut(s)	1273, 1560
BseAI	TCCGGA	1 cut(s)	1432
BseBI	CCWGG	6 cut(s)	1923, 2513, 2627, 3646, 5039, 5606
BseDI	CCNNGG	7 cut(s)	1494, 2003, 3520, 4980, 5037, 5582, 5770
BseJI	GATNNNNATC	2 cut(s)	1273, 1560
BseLI	CCNNNNNNNGG	8 cut(s)	115, 192, 235, 3088, 3145, 3283, 3612, 4468
BseMI	GCAATG	5 cut(s)	554, 2989, 4003, 4347, 5475
BseRI	GAGGAG	1 cut(s)	5942
BseSI	GKGCMC	2 cut(s)	3429, 3784
BseYI	CCCAGC	3 cut(s)	1236, 1987, 5895
BsgI	GTGCAG	4 cut(s)	537, 563, 3120, 3281
BsiHKAI	GWGCWC	8 cut(s)	333, 418, 1803, 2424, 3429, 3656, 5145, 6239
BsiHKCI	CYCGRG	2 cut(s)	353, 4373
BsiSI	CCGG	3 cut(s)	819, 1433, 5014
BslFI	GGGAC	4 cut(s)	4, 1029, 3326, 3572
BslI	CCNNNNNNNGG	8 cut(s)	115, 192, 235, 3088, 3145, 3283, 3612, 4468
BsmAI	GTCTC	6 cut(s)	425, 2335, 4459, 4819, 5492, 5640
BsmFI	GGGAC	4 cut(s)	4, 1029, 3326, 3572
BsmI	GAATGC	3 cut(s)	1738, 5319, 5932
Bso31I	GGTCTC	2 cut(s)	425, 5640
BsoBI	CYCGRG	2 cut(s)	353, 4373
Bsp1286I	GDGCHC	9 cut(s)	333, 418, 1803, 2424, 3429, 3656, 3784, 5145, 6239
Bsp13I	TCCGGA	1 cut(s)	1432
Bsp1407I	TGTACA	2 cut(s)	387, 5677
Bsp1720I	GCTNAGC	1 cut(s)	2825
BspACI	CCGC	8 cut(s)	76, 120, 193, 1581, 4345, 4538, 5246, 5621
BspEI	TCCGGA	1 cut(s)	1432
BspHI	TCATGA	1 cut(s)	4563
BspLI	GGNNCC	5 cut(s)	197, 3174, 3514, 3573, 4865
BspMAI	CTGCAG	4 cut(s)	2326, 4014, 5572, 6007
BspMI	ACCTGC	1 cut(s)	4438
BspOI	GCTAGC	1 cut(s)	797
BspPI	GGATC	4 cut(s)	3957, 4364, 4756, 5173
BspTI	CTTAAG	2 cut(s)	4691, 5104
BspTNI	GGTCTC	2 cut(s)	425, 5640
BsrBI	CCGCTC	1 cut(s)	193
BsrDI	GCAATG	5 cut(s)	554, 2989, 4003, 4347, 5475
BsrFI	RCCGGY	1 cut(s)	5013
BsrGI	TGTACA	2 cut(s)	387, 5677
BssAI	RCCGGY	1 cut(s)	5013
BssECI	CCNNGG	7 cut(s)	1494, 2003, 3520, 4980, 5037, 5582, 5770
BssSI	CACGAG	1 cut(s)	4962
BssT1I	CCWWGG	4 cut(s)	1494, 2003, 3520, 5770
Bst2BI	CACGAG	1 cut(s)	4962
Bst2UI	CCWGG	6 cut(s)	1923, 2513, 2627, 3646, 5039, 5606
Bst6I	CTCTTC	8 cut(s)	107, 858, 968, 2604, 2889, 3548, 4398, 4882
BstAFI	CTTAAG	2 cut(s)	4691, 5104
BstAPI	GCANNNNNTGC	3 cut(s)	2261, 2951, 4363
BstAUI	TGTACA	2 cut(s)	387, 5677
BstBAI	YACGTR	1 cut(s)	3482
BstEII	GGTNACC	1 cut(s)	5360
BstH2I	RGCGCY	3 cut(s)	524, 4235, 5795
BstHHI	GCGC	4 cut(s)	523, 4234, 4384, 5794
BstMAI	GTCTC	6 cut(s)	425, 2335, 4459, 4819, 5492, 5640
BstNI	CCWGG	6 cut(s)	1923, 2513, 2627, 3646, 5039, 5606
BstNSI	RCATGY	5 cut(s)	1899, 3128, 4181, 4538, 5767
BstPI	GGTNACC	1 cut(s)	5360
BstSCI	CCNGG	7 cut(s)	817, 1921, 2511, 2625, 3644, 5037, 5604
BstSFI	CTRYAG	8 cut(s)	1078, 1693, 2178, 2322, 3960, 4010, 5568, 6003
BstSLI	GKGCMC	2 cut(s)	3429, 3784
BstV2I	GAAGAC	9 cut(s)	1475, 2144, 2499, 2516, 2540, 3186, 3257, 4706, 6258
BstX2I	RGATCY	4 cut(s)	3949, 4369, 4737, 5165
BstXI	CCANNNNNNTGG	1 cut(s)	1945
BstYI	RGATCY	4 cut(s)	3949, 4369, 4737, 5165
BsuI	GTATCC	3 cut(s)	604, 4978, 4987
BtgZI	GCGATG	1 cut(s)	2330
BtrI	CACGTC	1 cut(s)	3475
BtsI	GCAGTG	3 cut(s)	3108, 3677, 6067
BveI	ACCTGC	1 cut(s)	4438
CaiI	CAGNNNCTG	4 cut(s)	3679, 4468, 5179, 5426
CciI	TCATGA	1 cut(s)	4563
CfoI	GCGC	4 cut(s)	523, 4234, 4384, 5794
Cfr10I	RCCGGY	1 cut(s)	5013
Cfr13I	GGNCC	9 cut(s)	78, 1171, 2761, 2852, 3136, 3572, 3622, 6070, 6088
CseI	GACGC	4 cut(s)	6, 2053, 3048, 3191
CsiI	ACCWGGT	1 cut(s)	3644
DraIII	CACNNNGTG	3 cut(s)	2445, 3938, 6062
DrdI	GACNNNNNNGTC	2 cut(s)	162, 2759
DriI	GACNNNNNGTC	3 cut(s)	1479, 1600, 5944
DseDI	GACNNNNNNGTC	2 cut(s)	162, 2759
EaeI	YGGCCR	4 cut(s)	1868, 1947, 4606, 5319
Eam1104I	CTCTTC	8 cut(s)	107, 858, 968, 2604, 2889, 3548, 4398, 4882
Eam1105I	GACNNNNNGTC	3 cut(s)	1479, 1600, 5944
EarI	CTCTTC	8 cut(s)	107, 858, 968, 2604, 2889, 3548, 4398, 4882
Ecl136II	GAGCTC	1 cut(s)	331
Eco130I	CCWWGG	4 cut(s)	1494, 2003, 3520, 5770
Eco24I	GRGCYC	1 cut(s)	333
Eco31I	GGTCTC	2 cut(s)	425, 5640
Eco32I	GATATC	6 cut(s)	127, 1271, 2173, 2454, 3700, 3883
Eco47I	GGWCC	6 cut(s)	1171, 2761, 2852, 3136, 3622, 6070
Eco47III	AGCGCT	2 cut(s)	4233, 5793
Eco53kI	GAGCTC	1 cut(s)	331
Eco57I	CTGAAG	8 cut(s)	875, 882, 992, 1535, 3269, 4056, 4167, 4870
Eco88I	CYCGRG	2 cut(s)	353, 4373
Eco91I	GGTNACC	1 cut(s)	5360
EcoICRI	GAGCTC	1 cut(s)	331
EcoO109I	RGGNCCY	1 cut(s)	1171
EcoO65I	GGTNACC	1 cut(s)	5360
EcoRI	GAATTC	2 cut(s)	2917, 3301
EcoRII	CCWGG	6 cut(s)	1921, 2511, 2625, 3644, 5037, 5604
EcoRV	GATATC	6 cut(s)	127, 1271, 2173, 2454, 3700, 3883
EcoT14I	CCWWGG	4 cut(s)	1494, 2003, 3520, 5770
EcoT22I	ATGCAT	1 cut(s)	1664
EcoT38I	GRGCYC	1 cut(s)	333
ErhI	CCWWGG	4 cut(s)	1494, 2003, 3520, 5770
FaqI	GGGAC	4 cut(s)	4, 1029, 3326, 3572
FauNDI	CATATG	1 cut(s)	3873
FbaI	TGATCA	4 cut(s)	630, 921, 2878, 5170
FblI	GTMKAC	2 cut(s)	54, 4897
FriOI	GRGCYC	1 cut(s)	333
GlaI	GCGC	4 cut(s)	522, 4233, 4383, 5793
GsaI	CCCAGC	3 cut(s)	1240, 1991, 5899
GsuI	CTGGAG	7 cut(s)	3110, 3159, 3752, 4445, 5687, 5718, 5898
HaeII	RGCGCY	3 cut(s)	524, 4235, 5795
HapII	CCGG	3 cut(s)	819, 1433, 5014
HgaI	GACGC	4 cut(s)	6, 2053, 3048, 3191
HhaI	GCGC	4 cut(s)	523, 4234, 4384, 5794
Hin6I	GCGC	4 cut(s)	521, 4232, 4382, 5792
HinP1I	GCGC	4 cut(s)	521, 4232, 4382, 5792
HincII	GTYRAC	4 cut(s)	55, 466, 1075, 2689
HindII	GTYRAC	4 cut(s)	55, 466, 1075, 2689
HindIII	AAGCTT	3 cut(s)	3221, 3584, 4688
HpaI	GTTAAC	1 cut(s)	466
HpaII	CCGG	3 cut(s)	819, 1433, 5014
HphI	GGTGA	7 cut(s)	2071, 2180, 2354, 4342, 5018, 5206, 6260
Hpy99I	CGWCG	3 cut(s)	70, 191, 1452
HpyCH4IV	ACGT	6 cut(s)	1765, 2433, 2496, 3448, 3474, 3481
HpySE526I	ACGT	6 cut(s)	1765, 2433, 2496, 3448, 3474, 3481
HspAI	GCGC	4 cut(s)	521, 4232, 4382, 5792
Kpn2I	TCCGGA	1 cut(s)	1432
KroI	GCCGGC	1 cut(s)	5013
KroNI	GCCGGC	1 cut(s)	5015
Ksp22I	TGATCA	4 cut(s)	630, 921, 2878, 5170
KspAI	GTTAAC	1 cut(s)	466
MabI	ACCWGGT	1 cut(s)	3644
MaeII	ACGT	6 cut(s)	1765, 2433, 2496, 3448, 3474, 3481
MbiI	CCGCTC	1 cut(s)	193
MfeI	CAATTG	2 cut(s)	3158, 4062
MflI	RGATCY	4 cut(s)	3949, 4369, 4737, 5165
MhlI	GDGCHC	9 cut(s)	333, 418, 1803, 2424, 3429, 3656, 3784, 5145, 6239
MlsI	TGGCCA	4 cut(s)	1870, 1949, 4608, 5321
MluNI	TGGCCA	4 cut(s)	1870, 1949, 4608, 5321
MmeI	TCCRAC	2 cut(s)	1347, 4389
Mox20I	TGGCCA	4 cut(s)	1870, 1949, 4608, 5321
Mph1103I	ATGCAT	1 cut(s)	1664
MroI	TCCGGA	1 cut(s)	1432
MroNI	GCCGGC	1 cut(s)	5013
MroXI	GAANNNNTTC	4 cut(s)	709, 2496, 2898, 6156
MscI	TGGCCA	4 cut(s)	1870, 1949, 4608, 5321
MslI	CAYNNNNRTG	3 cut(s)	1755, 1943, 4731
Msp20I	TGGCCA	4 cut(s)	1870, 1949, 4608, 5321
MspA1I	CMGCKG	1 cut(s)	884
MspCI	CTTAAG	2 cut(s)	4691, 5104
MspI	CCGG	3 cut(s)	819, 1433, 5014
MspR9I	CCNGG	7 cut(s)	819, 1923, 2513, 2627, 3646, 5039, 5606
MunI	CAATTG	2 cut(s)	3158, 4062
Mva1269I	GAATGC	3 cut(s)	1738, 5319, 5932
MvaI	CCWGG	6 cut(s)	1923, 2513, 2627, 3646, 5039, 5606
NaeI	GCCGGC	1 cut(s)	5015
NciI	CCSGG	1 cut(s)	819
NdeI	CATATG	1 cut(s)	3873
NgoMIV	GCCGGC	1 cut(s)	5013
NheI	GCTAGC	1 cut(s)	793
NlaIV	GGNNCC	5 cut(s)	197, 3174, 3514, 3573, 4865
NmeAIII	GCCGAG	1 cut(s)	2542
NsiI	ATGCAT	1 cut(s)	1664
NspI	RCATGY	5 cut(s)	1899, 3128, 4181, 4538, 5767
PaeI	GCATGC	3 cut(s)	1899, 4181, 4538
PaeR7I	CTCGAG	1 cut(s)	353
PagI	TCATGA	1 cut(s)	4563
PctI	GAATGC	3 cut(s)	1738, 5319, 5932
PdiI	GCCGGC	1 cut(s)	5015
PdmI	GAANNNNTTC	4 cut(s)	709, 2496, 2898, 6156
PflFI	GACNNNGTC	3 cut(s)	3042, 4676, 6068
PflMI	CCANNNNNTGG	3 cut(s)	3145, 3612, 4468
PfoI	TCCNGGA	1 cut(s)	817
Ppu21I	YACGTR	1 cut(s)	3482
PpuMI	RGGWCCY	1 cut(s)	1171
PshBI	ATTAAT	4 cut(s)	845, 2730, 3756, 5300
Psp124BI	GAGCTC	1 cut(s)	333
Psp1406I	AACGTT	1 cut(s)	1765
Psp5II	RGGWCCY	1 cut(s)	1171
Psp6I	CCWGG	6 cut(s)	1921, 2511, 2625, 3644, 5037, 5604
PspEI	GGTNACC	1 cut(s)	5360
PspFI	CCCAGC	3 cut(s)	1236, 1987, 5895
PspGI	CCWGG	6 cut(s)	1921, 2511, 2625, 3644, 5037, 5604
PspN4I	GGNNCC	5 cut(s)	197, 3174, 3514, 3573, 4865
PspPI	GGNCC	9 cut(s)	78, 1171, 2761, 2852, 3136, 3572, 3622, 6070, 6088
PspPPI	RGGWCCY	1 cut(s)	1171
PsrI	GAACNNNNNNTAC	2 cut(s)	1899, 1931
PstI	CTGCAG	4 cut(s)	2326, 4014, 5572, 6007
PstNI	CAGNNNCTG	4 cut(s)	3679, 4468, 5179, 5426
PsuI	RGATCY	4 cut(s)	3949, 4369, 4737, 5165
PsyI	GACNNNGTC	3 cut(s)	3042, 4676, 6068
PvuII	CAGCTG	1 cut(s)	884
RseI	CAYNNNNRTG	3 cut(s)	1755, 1943, 4731
SacI	GAGCTC	1 cut(s)	333
SalI	GTCGAC	1 cut(s)	53
Sau96I	GGNCC	9 cut(s)	78, 1171, 2761, 2852, 3136, 3572, 3622, 6070, 6088
ScaI	AGTACT	3 cut(s)	302, 359, 1638
ScrFI	CCNGG	7 cut(s)	819, 1923, 2513, 2627, 3646, 5039, 5606
SduI	GDGCHC	9 cut(s)	333, 418, 1803, 2424, 3429, 3656, 3784, 5145, 6239
SexAI	ACCWGGT	1 cut(s)	3644
SfcI	CTRYAG	8 cut(s)	1078, 1693, 2178, 2322, 3960, 4010, 5568, 6003
Sfr274I	CTCGAG	1 cut(s)	353
SinI	GGWCC	6 cut(s)	1171, 2761, 2852, 3136, 3622, 6070
SlaI	CTCGAG	1 cut(s)	353
SmiMI	CAYNNNNRTG	3 cut(s)	1755, 1943, 4731
SmlI	CTYRAG	9 cut(s)	167, 304, 344, 353, 731, 4385, 4691, 5104, 6179
SmoI	CTYRAG	9 cut(s)	167, 304, 344, 353, 731, 4385, 4691, 5104, 6179
SpeI	ACTAGT	1 cut(s)	1958
SphI	GCATGC	3 cut(s)	1899, 4181, 4538
SsiI	CCGC	8 cut(s)	76, 120, 193, 1581, 4345, 4538, 5246, 5621
SspI	AATATT	3 cut(s)	2269, 2863, 4253
SstI	GAGCTC	1 cut(s)	333
StyD4I	CCNGG	7 cut(s)	817, 1921, 2511, 2625, 3644, 5037, 5604
StyI	CCWWGG	4 cut(s)	1494, 2003, 3520, 5770
TaiI	ACGT	6 cut(s)	1768, 2436, 2499, 3451, 3477, 3484
TatI	WGTACW	7 cut(s)	300, 357, 387, 727, 1636, 4027, 5677
TauI	GCSGC	3 cut(s)	79, 122, 1583
TspGWI	ACGGA	8 cut(s)	758, 1042, 2156, 3444, 3501, 4121, 5934, 6062
Tth111I	GACNNNGTC	3 cut(s)	3042, 4676, 6068
Van91I	CCANNNNNTGG	3 cut(s)	3145, 3612, 4468
Vha464I	CTTAAG	2 cut(s)	4691, 5104
VneI	GTGCAC	1 cut(s)	3425
VpaK11BI	GGWCC	6 cut(s)	1171, 2761, 2852, 3136, 3622, 6070
VspI	ATTAAT	4 cut(s)	845, 2730, 3756, 5300
XbaI	TCTAGA	2 cut(s)	4843, 5923
XceI	RCATGY	5 cut(s)	1899, 3128, 4181, 4538, 5767
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1960, 3239
XhoI	CTCGAG	1 cut(s)	353
XmiI	GTMKAC	2 cut(s)	54, 4897
XmnI	GAANNNNTTC	4 cut(s)	709, 2496, 2898, 6156
ZrmI	AGTACT	3 cut(s)	302, 359, 1638
Zsp2I	ATGCAT	1 cut(s)	1664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.