BP28CT (NUC211) domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G06530 AT3G06530 AT3G06530 AT3G06530 AT3G06530 |
| fragaria_vesca | FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 |
| malus_domestica | MD07G1249300.v1.1 |
| prunus_persica | Prupe.2G273000_v2.0.a1 Prupe.2G273000_v2.0.a1 Prupe.2G273000_v2.0.a1 |
| pyrus_communis | pycom01g18810 pycom01g18840 pycom05g24490 pycom07g22250 pycom07g22260 |
| rosa_chinensis | RchiOBHm_Chr1g0373711 RchiOBHm_Chr1g0373721 RchiOBHm_Chr5g0059891 RchiOBHm_Chr7g0224071 |
| rosa_laevigata | RLG00000026806 |
| rosa_multiflora | Rmu_co8395535.1_g000001 Rmu_sc0002606.1_g000003 Rmu_sc0002606.1_g000005 Rmu_sc0010519.1_g000004 Rmu_sc0023430.1_g000002 |
| rosa_roxburghii | Rroxscaffold_4G00284050 Rroxscaffold_5G00353230 |
| rosa_rugosa | Rorug01G0379200 |
| rosa_samantha | Rh1AG388500 Rh1BG352900 Rh1CG365800 Rh1DG383300 Rh3AG266200 Rh3DG308600 |
| rosa_wichuraiana | Rw1G034670 Rw3G029530 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2643 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2399 |
| Acc36I | ACCTGC | 2 cut(s) | 3407, 4519 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 172, 3127 |
| AccBSI | CCGCTC | 3 cut(s) | 721, 1301, 3374 |
| AccI | GTMKAC | 4 cut(s) | 192, 393, 4143, 4981 |
| AccIII | TCCGGA | 1 cut(s) | 3925 |
| AclI | AACGTT | 2 cut(s) | 540, 2243 |
| AclWI | GGATC | 6 cut(s) | 3183, 3546, 3559, 4029, 4445, 5330 |
| AcoI | YGGCCR | 3 cut(s) | 1883, 1983, 4690 |
| AcuI | CTGAAG | 6 cut(s) | 881, 2028, 3123, 4239, 4651, 5130 |
| AcyI | GRCGYC | 1 cut(s) | 114 |
| AdeI | CACNNNGTG | 2 cut(s) | 2466, 4010 |
| AfaI | GTAC | 7 cut(s) | 365, 1470, 1921, 3451, 3657, 5067, 5437 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 172, 568, 3127, 4210, 4800 |
| AflIII | ACRYGT | 2 cut(s) | 1162, 1395 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3718 |
| AjiI | CACGTC | 1 cut(s) | 1398 |
| AjnI | CCWGG | 3 cut(s) | 1497, 1939, 3672 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 5478, 5510 |
| AleI | CACNNNNGTG | 1 cut(s) | 4668 |
| Alw21I | GWGCWC | 2 cut(s) | 526, 4521 |
| Alw26I | GTCTC | 9 cut(s) | 1127, 2356, 2479, 3052, 3082, 3284, 4395, 4540, 4903 |
| Alw44I | GTGCAC | 1 cut(s) | 522 |
| AlwI | GGATC | 6 cut(s) | 3183, 3546, 3559, 4029, 4445, 5330 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 4813, 5333 |
| Ama87I | CYCGRG | 2 cut(s) | 867, 5069 |
| Aor13HI | TCCGGA | 1 cut(s) | 3925 |
| AoxI | GGCC | 7 cut(s) | 123, 1883, 1983, 2127, 2835, 4690, 4938 |
| ApaLI | GTGCAC | 1 cut(s) | 522 |
| AseI | ATTAAT | 4 cut(s) | 288, 410, 2031, 5061 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 86, 2432, 2517, 4497, 4836 |
| AspLEI | GCGC | 4 cut(s) | 1910, 3379, 3538, 3854 |
| AspS9I | GGNCC | 9 cut(s) | 72, 178, 630, 2128, 2530, 3304, 4155, 4762, 4939 |
| AsuHPI | GGTGA | 9 cut(s) | 82, 1258, 2089, 2201, 2865, 3362, 3983, 4423, 5462 |
| AsuII | TTCGAA | 4 cut(s) | 454, 2136, 3316, 5368 |
| AsuNHI | GCTAGC | 2 cut(s) | 799, 1751 |
| AvaI | CYCGRG | 2 cut(s) | 867, 5069 |
| AvaII | GGWCC | 7 cut(s) | 72, 178, 630, 2530, 3304, 4155, 4762 |
| BaeGI | GKGCMC | 4 cut(s) | 526, 1487, 5076, 5083 |
| BalI | TGGCCA | 3 cut(s) | 1885, 1985, 4692 |
| BamHI | GGATCC | 1 cut(s) | 3551 |
| BanII | GRGCYC | 4 cut(s) | 781, 1352, 2704, 4521 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3096, 3128 |
| BbsI | GAAGAC | 3 cut(s) | 3225, 3325, 4298 |
| Bbv12I | GWGCWC | 2 cut(s) | 526, 4521 |
| BceAI | ACGGC | 6 cut(s) | 49, 70, 520, 1449, 2038, 3069 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 867, 901 |
| BciT130I | CCWGG | 3 cut(s) | 1499, 1941, 3674 |
| BciVI | GTATCC | 3 cut(s) | 569, 2742, 4589 |
| BclI | TGATCA | 1 cut(s) | 843 |
| BcoDI | GTCTC | 9 cut(s) | 1127, 2356, 2479, 3052, 3082, 3284, 4395, 4540, 4903 |
| BfmI | CTRYAG | 6 cut(s) | 1292, 1602, 2184, 2199, 3254, 4032 |
| BfoI | RGCGCY | 1 cut(s) | 3380 |
| BfuAI | ACCTGC | 2 cut(s) | 3407, 4519 |
| BfuI | GTATCC | 3 cut(s) | 569, 2742, 4589 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 122 |
| BlpI | GCTNAGC | 3 cut(s) | 21, 2846, 5461 |
| BmcAI | AGTACT | 1 cut(s) | 365 |
| Bme1390I | CCNGG | 3 cut(s) | 1499, 1941, 3674 |
| Bme18I | GGWCC | 7 cut(s) | 72, 178, 630, 2530, 3304, 4155, 4762 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3718 |
| BmeT110I | CYCGRG | 2 cut(s) | 867, 5069 |
| BmgBI | CACGTC | 1 cut(s) | 1398 |
| BmgT120I | GGNCC | 9 cut(s) | 72, 178, 630, 2128, 2530, 3304, 4155, 4762, 4939 |
| BmiI | GGNNCC | 5 cut(s) | 63, 73, 778, 3213, 3553 |
| BmrFI | CCNGG | 3 cut(s) | 1499, 1941, 3674 |
| BmtI | GCTAGC | 2 cut(s) | 803, 1755 |
| BoxI | GACNNNNGTC | 1 cut(s) | 739 |
| BpiI | GAAGAC | 3 cut(s) | 3225, 3325, 4298 |
| BpmI | CTGGAG | 6 cut(s) | 194, 795, 3064, 3149, 3198, 4067 |
| Bpu10I | CCTNAGC | 4 cut(s) | 1173, 1869, 2387, 2891 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 21, 2846, 5461 |
| Bpu14I | TTCGAA | 4 cut(s) | 454, 2136, 3316, 5368 |
| BpuEI | CTTGAG | 4 cut(s) | 380, 496, 758, 4377 |
| Bsa29I | ATCGAT | 3 cut(s) | 135, 2902, 5513 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1572, 4091 |
| BsaHI | GRCGYC | 1 cut(s) | 114 |
| BsaI | GGTCTC | 1 cut(s) | 2479 |
| BsaJI | CCNNGG | 6 cut(s) | 166, 1506, 2021, 2355, 3547, 4158 |
| BsaWI | WCCGGW | 1 cut(s) | 3925 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 805, 835 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 172, 568, 3127, 4210, 4800 |
| Bse3DI | GCAATG | 3 cut(s) | 560, 3010, 3749 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1572, 4091 |
| BseAI | TCCGGA | 1 cut(s) | 3925 |
| BseBI | CCWGG | 3 cut(s) | 1499, 1941, 3674 |
| BseCI | ATCGAT | 3 cut(s) | 135, 2902, 5513 |
| BseDI | CCNNGG | 6 cut(s) | 166, 1506, 2021, 2355, 3547, 4158 |
| BseJI | GATNNNNATC | 2 cut(s) | 1572, 4091 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 172, 568, 3127, 4210, 4800 |
| BseMI | GCAATG | 3 cut(s) | 560, 3010, 3749 |
| BseMII | CTCAG | 8 cut(s) | 35, 336, 1365, 2860, 4142, 5079, 5373, 5376 |
| BseRI | GAGGAG | 2 cut(s) | 887, 2219 |
| BseSI | GKGCMC | 4 cut(s) | 526, 1487, 5076, 5083 |
| BseYI | CCCAGC | 1 cut(s) | 1242 |
| BsgI | GTGCAG | 1 cut(s) | 2136 |
| Bsh1285I | CGRYCG | 1 cut(s) | 4801 |
| BshFI | GGCC | 7 cut(s) | 125, 1885, 1985, 2129, 2837, 4692, 4940 |
| BshVI | ATCGAT | 3 cut(s) | 135, 2902, 5513 |
| BsiEI | CGRYCG | 1 cut(s) | 4801 |
| BsiHKAI | GWGCWC | 2 cut(s) | 526, 4521 |
| BsiHKCI | CYCGRG | 2 cut(s) | 867, 5069 |
| BsiSI | CCGG | 1 cut(s) | 3926 |
| BslFI | GGGAC | 4 cut(s) | 1035, 2405, 3490, 3680 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 172, 568, 3127, 4210, 4800 |
| BsmAI | GTCTC | 9 cut(s) | 1127, 2356, 2479, 3052, 3082, 3284, 4395, 4540, 4903 |
| BsmFI | GGGAC | 4 cut(s) | 1035, 2405, 3490, 3680 |
| BsmI | GAATGC | 3 cut(s) | 3346, 3854, 5484 |
| BsnI | GGCC | 7 cut(s) | 125, 1885, 1985, 2129, 2837, 4692, 4940 |
| Bso31I | GGTCTC | 1 cut(s) | 2479 |
| BsoBI | CYCGRG | 2 cut(s) | 867, 5069 |
| Bsp119I | TTCGAA | 4 cut(s) | 454, 2136, 3316, 5368 |
| Bsp1286I | GDGCHC | 8 cut(s) | 526, 781, 1352, 1487, 2704, 4521, 5076, 5083 |
| Bsp13I | TCCGGA | 1 cut(s) | 3925 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 21, 2846, 5461 |
| Bsp19I | CCATGG | 1 cut(s) | 2021 |
| BspANI | GGCC | 7 cut(s) | 125, 1885, 1985, 2129, 2837, 4692, 4940 |
| BspCNI | CTCAG | 8 cut(s) | 34, 335, 1364, 2859, 4143, 5080, 5374, 5375 |
| BspDI | ATCGAT | 3 cut(s) | 135, 2902, 5513 |
| BspEI | TCCGGA | 1 cut(s) | 3925 |
| BspHI | TCATGA | 3 cut(s) | 1564, 4521, 4647 |
| BspLI | GGNNCC | 5 cut(s) | 63, 73, 778, 3213, 3553 |
| BspMAI | CTGCAG | 1 cut(s) | 3258 |
| BspMI | ACCTGC | 2 cut(s) | 3407, 4519 |
| BspOI | GCTAGC | 2 cut(s) | 803, 1755 |
| BspPI | GGATC | 6 cut(s) | 3183, 3546, 3559, 4029, 4445, 5330 |
| BspQI | GCTCTTC | 1 cut(s) | 4509 |
| BspT104I | TTCGAA | 4 cut(s) | 454, 2136, 3316, 5368 |
| BspTNI | GGTCTC | 1 cut(s) | 2479 |
| BsrBI | CCGCTC | 3 cut(s) | 721, 1301, 3374 |
| BsrDI | GCAATG | 3 cut(s) | 560, 3010, 3749 |
| BssECI | CCNNGG | 6 cut(s) | 166, 1506, 2021, 2355, 3547, 4158 |
| BssNAI | GTATAC | 1 cut(s) | 4144 |
| BssNI | GRCGYC | 1 cut(s) | 114 |
| BssT1I | CCWWGG | 5 cut(s) | 166, 1506, 2021, 3547, 4158 |
| Bst1107I | GTATAC | 1 cut(s) | 4144 |
| Bst2UI | CCWGG | 3 cut(s) | 1499, 1941, 3674 |
| Bst6I | CTCTTC | 8 cut(s) | 113, 701, 830, 2719, 2845, 3050, 4205, 4509 |
| BstACI | GRCGYC | 1 cut(s) | 114 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 5051 |
| BstBI | TTCGAA | 4 cut(s) | 454, 2136, 3316, 5368 |
| BstDSI | CCRYGG | 2 cut(s) | 2021, 2355 |
| BstH2I | RGCGCY | 1 cut(s) | 3380 |
| BstHHI | GCGC | 4 cut(s) | 1910, 3379, 3538, 3854 |
| BstMAI | GTCTC | 9 cut(s) | 1127, 2356, 2479, 3052, 3082, 3284, 4395, 4540, 4903 |
| BstMCI | CGRYCG | 1 cut(s) | 4801 |
| BstNI | CCWGG | 3 cut(s) | 1499, 1941, 3674 |
| BstNSI | RCATGY | 6 cut(s) | 1166, 1722, 3167, 4249, 4618, 4622 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 739 |
| BstSCI | CCNGG | 3 cut(s) | 1497, 1939, 3672 |
| BstSFI | CTRYAG | 6 cut(s) | 1292, 1602, 2184, 2199, 3254, 4032 |
| BstSLI | GKGCMC | 4 cut(s) | 526, 1487, 5076, 5083 |
| BstV2I | GAAGAC | 3 cut(s) | 3225, 3325, 4298 |
| BstX2I | RGATCY | 3 cut(s) | 3551, 4021, 4450 |
| BstYI | RGATCY | 3 cut(s) | 3551, 4021, 4450 |
| BstZ17I | GTATAC | 1 cut(s) | 4144 |
| Bsu15I | ATCGAT | 3 cut(s) | 135, 2902, 5513 |
| BsuI | GTATCC | 3 cut(s) | 569, 2742, 4589 |
| BsuRI | GGCC | 7 cut(s) | 125, 1885, 1985, 2129, 2837, 4692, 4940 |
| BsuTUI | ATCGAT | 3 cut(s) | 135, 2902, 5513 |
| BtgI | CCRYGG | 2 cut(s) | 2021, 2355 |
| BtrI | CACGTC | 1 cut(s) | 1398 |
| BtsI | GCAGTG | 2 cut(s) | 3044, 5028 |
| BveI | ACCTGC | 2 cut(s) | 3407, 4519 |
| CaiI | CAGNNNCTG | 2 cut(s) | 4813, 5333 |
| CciI | TCATGA | 3 cut(s) | 1564, 4521, 4647 |
| CfoI | GCGC | 4 cut(s) | 1910, 3379, 3538, 3854 |
| Cfr13I | GGNCC | 9 cut(s) | 72, 178, 630, 2128, 2530, 3304, 4155, 4762, 4939 |
| ClaI | ATCGAT | 3 cut(s) | 135, 2902, 5513 |
| CseI | GACGC | 3 cut(s) | 122, 178, 5313 |
| Csp6I | GTAC | 7 cut(s) | 364, 1469, 1920, 3450, 3656, 5066, 5436 |
| CviQI | GTAC | 7 cut(s) | 364, 1469, 1920, 3450, 3656, 5066, 5436 |
| DraI | TTTAAA | 2 cut(s) | 2937, 3622 |
| DraIII | CACNNNGTG | 2 cut(s) | 2466, 4010 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2399 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3718 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2399 |
| EaeI | YGGCCR | 3 cut(s) | 1883, 1983, 4690 |
| Eam1104I | CTCTTC | 8 cut(s) | 113, 701, 830, 2719, 2845, 3050, 4205, 4509 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3718 |
| EarI | CTCTTC | 8 cut(s) | 113, 701, 830, 2719, 2845, 3050, 4205, 4509 |
| EciI | GGCGGA | 2 cut(s) | 1466, 2932 |
| Ecl136II | GAGCTC | 1 cut(s) | 4519 |
| Eco130I | CCWWGG | 5 cut(s) | 166, 1506, 2021, 3547, 4158 |
| Eco24I | GRGCYC | 4 cut(s) | 781, 1352, 2704, 4521 |
| Eco31I | GGTCTC | 1 cut(s) | 2479 |
| Eco32I | GATATC | 3 cut(s) | 133, 1689, 1762 |
| Eco47I | GGWCC | 7 cut(s) | 72, 178, 630, 2530, 3304, 4155, 4762 |
| Eco53kI | GAGCTC | 1 cut(s) | 4519 |
| Eco57I | CTGAAG | 6 cut(s) | 881, 2028, 3123, 4239, 4651, 5130 |
| Eco88I | CYCGRG | 2 cut(s) | 867, 5069 |
| EcoICRI | GAGCTC | 1 cut(s) | 4519 |
| EcoO109I | RGGNCCY | 3 cut(s) | 178, 3304, 4155 |
| EcoRI | GAATTC | 1 cut(s) | 4822 |
| EcoRII | CCWGG | 3 cut(s) | 1497, 1939, 3672 |
| EcoRV | GATATC | 3 cut(s) | 133, 1689, 1762 |
| EcoT14I | CCWWGG | 5 cut(s) | 166, 1506, 2021, 3547, 4158 |
| EcoT22I | ATGCAT | 4 cut(s) | 601, 4251, 4334, 4620 |
| EcoT38I | GRGCYC | 4 cut(s) | 781, 1352, 2704, 4521 |
| ErhI | CCWWGG | 5 cut(s) | 166, 1506, 2021, 3547, 4158 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 206, 238, 1241, 1273 |
| FaqI | GGGAC | 4 cut(s) | 1035, 2405, 3490, 3680 |
| FauI | CCCGC | 2 cut(s) | 101, 1581 |
| FauNDI | CATATG | 1 cut(s) | 4987 |
| FbaI | TGATCA | 1 cut(s) | 843 |
| FblI | GTMKAC | 4 cut(s) | 192, 393, 4143, 4981 |
| FriOI | GRGCYC | 4 cut(s) | 781, 1352, 2704, 4521 |
| GlaI | GCGC | 4 cut(s) | 1909, 3378, 3537, 3853 |
| GsaI | CCCAGC | 1 cut(s) | 1246 |
| GsuI | CTGGAG | 6 cut(s) | 194, 795, 3064, 3149, 3198, 4067 |
| HaeII | RGCGCY | 1 cut(s) | 3380 |
| HaeIII | GGCC | 7 cut(s) | 125, 1885, 1985, 2129, 2837, 4692, 4940 |
| HapII | CCGG | 1 cut(s) | 3926 |
| HgaI | GACGC | 3 cut(s) | 122, 178, 5313 |
| HhaI | GCGC | 4 cut(s) | 1910, 3379, 3538, 3854 |
| Hin1I | GRCGYC | 1 cut(s) | 114 |
| Hin6I | GCGC | 4 cut(s) | 1908, 3377, 3536, 3852 |
| HinP1I | GCGC | 4 cut(s) | 1908, 3377, 3536, 3852 |
| HincII | GTYRAC | 4 cut(s) | 193, 691, 1777, 2710 |
| HindII | GTYRAC | 4 cut(s) | 193, 691, 1777, 2710 |
| HindIII | AAGCTT | 9 cut(s) | 513, 827, 1854, 2255, 2765, 2969, 3260, 4469, 5458 |
| HpaII | CCGG | 1 cut(s) | 3926 |
| HphI | GGTGA | 9 cut(s) | 82, 1258, 2089, 2201, 2865, 3362, 3983, 4423, 5462 |
| Hpy99I | CGWCG | 5 cut(s) | 70, 116, 194, 197, 1464 |
| HpyCH4IV | ACGT | 3 cut(s) | 540, 1397, 2243 |
| HpySE526I | ACGT | 3 cut(s) | 540, 1397, 2243 |
| Hsp92I | GRCGYC | 1 cut(s) | 114 |
| HspAI | GCGC | 4 cut(s) | 1908, 3377, 3536, 3852 |
| Kpn2I | TCCGGA | 1 cut(s) | 3925 |
| Ksp22I | TGATCA | 1 cut(s) | 843 |
| LguI | GCTCTTC | 1 cut(s) | 4509 |
| LmnI | GCTCC | 9 cut(s) | 61, 776, 1298, 3217, 3940, 4086, 4268, 4376, 4750 |
| MaeII | ACGT | 3 cut(s) | 540, 1397, 2243 |
| MbiI | CCGCTC | 3 cut(s) | 721, 1301, 3374 |
| MfeI | CAATTG | 2 cut(s) | 852, 1926 |
| MflI | RGATCY | 3 cut(s) | 3551, 4021, 4450 |
| MhlI | GDGCHC | 8 cut(s) | 526, 781, 1352, 1487, 2704, 4521, 5076, 5083 |
| MlsI | TGGCCA | 3 cut(s) | 1885, 1985, 4692 |
| MluNI | TGGCCA | 3 cut(s) | 1885, 1985, 4692 |
| MmeI | TCCRAC | 6 cut(s) | 1359, 1680, 2620, 3165, 3180, 4789 |
| Mox20I | TGGCCA | 3 cut(s) | 1885, 1985, 4692 |
| Mph1103I | ATGCAT | 4 cut(s) | 601, 4251, 4334, 4620 |
| MroI | TCCGGA | 1 cut(s) | 3925 |
| MroXI | GAANNNNTTC | 5 cut(s) | 86, 2432, 2517, 4497, 4836 |
| MscI | TGGCCA | 3 cut(s) | 1885, 1985, 4692 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1058, 1569, 1770, 4668 |
| Msp20I | TGGCCA | 3 cut(s) | 1885, 1985, 4692 |
| MspA1I | CMGCKG | 1 cut(s) | 4916 |
| MspI | CCGG | 1 cut(s) | 3926 |
| MspR9I | CCNGG | 3 cut(s) | 1499, 1941, 3674 |
| MunI | CAATTG | 2 cut(s) | 852, 1926 |
| Mva1269I | GAATGC | 3 cut(s) | 3346, 3854, 5484 |
| MvaI | CCWGG | 3 cut(s) | 1499, 1941, 3674 |
| NcoI | CCATGG | 1 cut(s) | 2021 |
| NdeI | CATATG | 1 cut(s) | 4987 |
| NheI | GCTAGC | 2 cut(s) | 799, 1751 |
| NlaIV | GGNNCC | 5 cut(s) | 63, 73, 778, 3213, 3553 |
| NmeAIII | GCCGAG | 1 cut(s) | 4141 |
| NmuCI | GTSAC | 6 cut(s) | 1398, 2458, 2871, 3612, 3982, 5230 |
| NsiI | ATGCAT | 4 cut(s) | 601, 4251, 4334, 4620 |
| NspI | RCATGY | 6 cut(s) | 1166, 1722, 3167, 4249, 4618, 4622 |
| NspV | TTCGAA | 4 cut(s) | 454, 2136, 3316, 5368 |
| OliI | CACNNNNGTG | 1 cut(s) | 4668 |
| PaeI | GCATGC | 3 cut(s) | 4249, 4618, 4622 |
| PaeR7I | CTCGAG | 1 cut(s) | 867 |
| PagI | TCATGA | 3 cut(s) | 1564, 4521, 4647 |
| PciI | ACATGT | 1 cut(s) | 1162 |
| PciSI | GCTCTTC | 1 cut(s) | 4509 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 5186 |
| PctI | GAATGC | 3 cut(s) | 3346, 3854, 5484 |
| PdmI | GAANNNNTTC | 5 cut(s) | 86, 2432, 2517, 4497, 4836 |
| PflFI | GACNNNGTC | 2 cut(s) | 3063, 4760 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 172, 3127 |
| PfoI | TCCNGGA | 1 cut(s) | 1497 |
| Ple19I | CGATCG | 1 cut(s) | 4801 |
| PpuMI | RGGWCCY | 3 cut(s) | 178, 3304, 4155 |
| PscI | ACATGT | 1 cut(s) | 1162 |
| PshAI | GACNNNNGTC | 1 cut(s) | 739 |
| PshBI | ATTAAT | 4 cut(s) | 288, 410, 2031, 5061 |
| PsiI | TTATAA | 1 cut(s) | 2643 |
| Psp124BI | GAGCTC | 1 cut(s) | 4521 |
| Psp1406I | AACGTT | 2 cut(s) | 540, 2243 |
| Psp5II | RGGWCCY | 3 cut(s) | 178, 3304, 4155 |
| Psp6I | CCWGG | 3 cut(s) | 1497, 1939, 3672 |
| PspFI | CCCAGC | 1 cut(s) | 1242 |
| PspGI | CCWGG | 3 cut(s) | 1497, 1939, 3672 |
| PspN4I | GGNNCC | 5 cut(s) | 63, 73, 778, 3213, 3553 |
| PspPI | GGNCC | 9 cut(s) | 72, 178, 630, 2128, 2530, 3304, 4155, 4762, 4939 |
| PspPPI | RGGWCCY | 3 cut(s) | 178, 3304, 4155 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3648, 3680 |
| PstI | CTGCAG | 1 cut(s) | 3258 |
| PstNI | CAGNNNCTG | 2 cut(s) | 4813, 5333 |
| PsuI | RGATCY | 3 cut(s) | 3551, 4021, 4450 |
| PsyI | GACNNNGTC | 2 cut(s) | 3063, 4760 |
| PvuI | CGATCG | 1 cut(s) | 4801 |
| RsaI | GTAC | 7 cut(s) | 365, 1470, 1921, 3451, 3657, 5067, 5437 |
| RsaNI | GTAC | 7 cut(s) | 364, 1469, 1920, 3450, 3656, 5066, 5436 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1058, 1569, 1770, 4668 |
| SacI | GAGCTC | 1 cut(s) | 4521 |
| SalI | GTCGAC | 1 cut(s) | 191 |
| SapI | GCTCTTC | 1 cut(s) | 4509 |
| Sau96I | GGNCC | 9 cut(s) | 72, 178, 630, 2128, 2530, 3304, 4155, 4762, 4939 |
| ScaI | AGTACT | 1 cut(s) | 365 |
| ScrFI | CCNGG | 3 cut(s) | 1499, 1941, 3674 |
| SduI | GDGCHC | 8 cut(s) | 526, 781, 1352, 1487, 2704, 4521, 5076, 5083 |
| SfcI | CTRYAG | 6 cut(s) | 1292, 1602, 2184, 2199, 3254, 4032 |
| Sfr274I | CTCGAG | 1 cut(s) | 867 |
| SfuI | TTCGAA | 4 cut(s) | 454, 2136, 3316, 5368 |
| SgrDI | CGTCGACG | 1 cut(s) | 191 |
| SinI | GGWCC | 7 cut(s) | 72, 178, 630, 2530, 3304, 4155, 4762 |
| SlaI | CTCGAG | 1 cut(s) | 867 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1058, 1569, 1770, 4668 |
| SmlI | CTYRAG | 5 cut(s) | 359, 475, 737, 867, 4392 |
| SmoI | CTYRAG | 5 cut(s) | 359, 475, 737, 867, 4392 |
| SphI | GCATGC | 3 cut(s) | 4249, 4618, 4622 |
| SspI | AATATT | 7 cut(s) | 1042, 2290, 2884, 3394, 4295, 4325, 5136 |
| SstI | GAGCTC | 1 cut(s) | 4521 |
| StyD4I | CCNGG | 3 cut(s) | 1497, 1939, 3672 |
| StyI | CCWWGG | 5 cut(s) | 166, 1506, 2021, 3547, 4158 |
| TaiI | ACGT | 3 cut(s) | 543, 1400, 2246 |
| TaqII | GACCGA | 1 cut(s) | 2177 |
| TatI | WGTACW | 4 cut(s) | 363, 1468, 1919, 5065 |
| TauI | GCSGC | 4 cut(s) | 128, 1595, 3377, 4919 |
| TseFI | GTSAC | 6 cut(s) | 1398, 2458, 2871, 3612, 3982, 5230 |
| Tsp45I | GTSAC | 6 cut(s) | 1398, 2458, 2871, 3612, 3982, 5230 |
| TspGWI | ACGGA | 8 cut(s) | 31, 74, 551, 2231, 2323, 2344, 4193, 5195 |
| Tth111I | GACNNNGTC | 2 cut(s) | 3063, 4760 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 172, 3127 |
| VneI | GTGCAC | 1 cut(s) | 522 |
| VpaK11BI | GGWCC | 7 cut(s) | 72, 178, 630, 2530, 3304, 4155, 4762 |
| VspI | ATTAAT | 4 cut(s) | 288, 410, 2031, 5061 |
| XbaI | TCTAGA | 1 cut(s) | 4927 |
| XceI | RCATGY | 6 cut(s) | 1166, 1722, 3167, 4249, 4618, 4622 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1978, 5167 |
| XhoI | CTCGAG | 1 cut(s) | 867 |
| XmiI | GTMKAC | 4 cut(s) | 192, 393, 4143, 4981 |
| XmnI | GAANNNNTTC | 5 cut(s) | 86, 2432, 2517, 4497, 4836 |
| ZrmI | AGTACT | 1 cut(s) | 365 |
| Zsp2I | ATGCAT | 4 cut(s) | 601, 4251, 4334, 4620 |