Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002105

Physical Location & Seq

Genomic Coordinates Forward (+)

63737916 .. 63751815

Gene Structure 13900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG365800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 6354 bp

ATGGCGACCTCGATTGCGTCCCAGTTAAAAGTCCTGAAATCGCTGATACAAGTCGACCAAGACCCGTCGCAGAAGCGGCCCTTCACTCGCCCTTCCATCCTCTTCGACCCCAAAGAGGCCGCCGATATCGACATCGACACAATTTTCGCCGTAGGACTTCAAGGTCTTGAGCTTCTTGTTAGTACCGACGAGCGGTTCCGAAACTTTAAGAGTGACTTGTTCAGCTACCAGAGTAAGGAATTGGATAGAGAGTTGATGGGAGTAGAGGAAAACAAACGCATTGATGCTTCGATTAGTAAGTACTTGAGATTGCTGTCAGGGCATTTCGAGCTCCCATCGTCACTCAAGACTCTCGAGTACTTGGTGCGGAGATATAAGATTCATGTTTACAACTTCGAGGAATTGATTTTGTGTGCTCTGCCGTACCATGAGACCCACGCATTTGTTAAAATTGTTCAATTAATTAACTTCGGAAATAGCAAGTGGAAATTTTTAGAGGGCGTGAAAGTTTCTGGTGCAGCGCCACCTAGAAATGTTATAGTGCAGCAATGTATTCGTGACATGGGGGTTTTGGAGGCTTTATTCGACTATGCATCCCCGTCAAAGAAGTACCGGCCTTCAAAGCCCGTGATCAGATTTTGCACGGCAGTTGTTGTTGAGGTTTTGGGTTCTGTTGCATCTGTTGAAAGTCATGTTGTGAAAGGAATCTGTTCACTTATTCATTCTGTACTTGAGGTTGGCACGGATGGACATTCAGAAAACAAGGCTGGTGCTATGATGATTGTTGGTATGCTAGCAAGTAAAGTTACAATATCTCCCGGACTTGTCAGGGGATTGATTTTATTAATTGCTAAAGTTGCTGAAGAGGATGCAAAAGAGTCAGCTGATCTTCAGCTTTTTCGCTTATCACTTATGACTTTGATCAACCTTGTTCAGTTGCAAGTTGTGGATAAGTTTCCCATGAAGGCTCTGAAGAGTTTGATCGGCATTAGGGATTTTGCTGGCATCCTTCTGGGACTTTTCAACAAGTTCAAAATTGATAGATTCCTTTCCGTGCTTTTGGATTCTCTTGTTGACTATAGTTCGTCTGATGAATCTTGCCAGCTTGCGTTGATCTCCATATTAGATACAGTTCCTTCCAAGAATTTTGTTCATCATGTAGTTCCAAAGGTCCTATCTTCCTGCTTGCAAAAGTCACAGGACATGGAAAATTCAACATTATTTTCATCAGGAAGCTGGGCAGAGAAAGTTTTACTCATTCTTAGAAGATATCCATCTGAACTGCATGGAGCTGCTCACAAATTTCTGGAAAAGAATGTGCAATCTAAGAAACGGGGTTCGGTACATGAAGCTCTGCGTAAAATGTTGGATGGGAATTTGGACAGGTCACTAGCTTGCTCAGAATCAAATTTTTGGTTCAGATTACATCATCCGGAGGCTGATGTTCGTCGCCGTACACTTTCTGAAATAAGGACATCAGGTCTTCTGGAAGCCAAGGGTACAAATTCGCAGAGTCTTGTAATCATCCAAGATGGCATATTGCGACAGCTTCAGGATGATGATCTTAGCGTTGTCAGAGCGGCTTTGTCGTTGGACAGATTGTCCAGTTTAATAAACCCATCTGATCTTATTGAAGTACTGGATAATCTGCTTAGAAGATGCATTGGTCTTTTAACAACAGGTTCATTGGAGAATAATAGCCTAGCATGTGATGTTGCGATTTTGTGCCTAAAGAATGCTGTTGCTGACATCCATGAGAATGTTGAACGTTGCAATAAACTAGCTGCTATGATATTTCCTTTGCTCCTTGTTGTACCTAAGACACAGAGGTTAAATTTGAAAGCATTGGAATTAGCTAAGGCAGTAAAATGGCCACTGTTTGAGAATCTTGCTGCTGCATGCAATACAGAACAAACATTACAACCAGGAAAGTTATCCTCCATTAACATGGCCACCATTACTAGTTTGGCGAGCAGATTCTTGTTGCACCCTGCAGAATTTATGCCTTGGCTTGTTCAGAGTTCTAATGACTTTGAGTTGTCAAAGACGCACTTCTTTTTGGTGATGATGCAGACAATTCTGATTGAAAAGGAATCTGCTGAATGTTTGGAACTTTTTGAAGTTTTGTTTCCTGCATTGAAGACGGAATGGGAATCATTTGAGTCTAGGGGTGATATCTCTATAGCAGAGTTCAAAACAGAGATGCTGAATTGGGATTGCAGCAGATTTCTTGATAAGCTAGATTCCAATTTGAAAGCAATAAATGCAAATATTCTAATTTGCATCTTTTGGAGGTTGATGGAGGCATTTCTATCTGCGATGCCTGCAGATGTCTCATTGGATGGTGATGGGAAGTGGGTTAGCTGGCTCAGGGAATTGTTCGCCTTCTTCTCAGGCTGTCAGTTTAAGAACATATTTAAGGAGCACCGTCATTACGTTGTCACAAAGTGCAAGATATCTGCTGTTTCTTTCCTTGCCAAGTTTTTCACAGAAGAAGATGTTCCTGTTGCAGTCCAGGTCGAGAGTCTTCACTGTTTTTCCTTTCTGTGTCTTCAATCAGAAGTTAGATTGCCAATTCAATTTCTTGCTGAATTTCCATCTCTTCTTGTTCCACTGGCTAGTTGTAACCAGGAGATAAGAAATGTTGCCATGAATTGTATTGAGGGTTTACAGACCTTTTCATCTCATGTTGACTCTTTGAGCAAGAAAAATGGAAACCGTGCAATTCGGATTAATCATCTTGATAAGCTGCTGGACTTGTTGGTCCAGCAGAAAAGGCTAATCCTATCGGACAGGAACTTGCTTCCTTCTCTCTTGGCCTCTTTGCTCAGCCCGTCCTTCCAGAGCTTCTTAGGACCAAAGAATATTGAGATAAGGTTTGATCAATCTACAAGAGAAGAGATTCTTACTTTCATGTTGAATTCTGCCATGAAACTGCCTGATTATGCAAGGATTGCTATTCTTTCTTTGCTCAGAGGAACAGGTAATGCCATTATACATCATAAAGAAGTTAAGTCATATTTATCTCATCTCTTGGAAAGACGCAGTCGGAGTTTGTCAAAAATTGAAGTTCAAATATTATGCCTTCTACTGGAGTGCTGTGCAGTGCCTTCTTCATCGGACGGGCATGTATTTGAGGACCATTTATTGGAGGCTTTGCAATTGGATGGCTTGGCTCCAGAAGACGCTTCCACCATACAGCCTTGTATTACTGTCCTGCAAATGCTTAACTGCCAAATTTACAGTGGACTGAAGACAGAAGTGCAGGAGCTTTTGTTTCGAAAACTGGTAGCTGTGTTTCAGAATTCAAATGGGGACATACAAAATGCAACTAGAGCAGCCTTGCAGCGTTTACATATTACTTGCTCCACTATCGTCCACACTCTCGATCACATACTCAAAGATGGAAGTTGTGCAAGTCGTTCAGTGCATGGAACAAAGAAAATGAAACGTCAGAAGTCCACTTCGTCTAGTGATGTGATACGTGACGGAGAAAATGCACTCTCTTTACTTGGTTCCCTCCTTGGTATTTTATTATTTAAGAAAGACATAGAGAAGAGGGACTCTCTATTGGGGCCGTTGTTTAAGCTTCTTTACAAAACCTTTTCCAATGAGTGGGTACAGGACCACTTTAGCATTTCTGATGCCAGGTTGAGCACAGTAAATTACATACAACAGACACTGCTGATAATCTTAGAAGATATCAGTTCTTCACTAATAAGTTCTATTCCACTGGAGGACAACATGGTAAATGAGATTAATGTCAAACATTTGGTTGAGTGTGCCCATTCTGCGAAGGATGGAGTTACTCGCAACCATGTCTTTTCACTGATTTCCTCCATCACAAAGATTGTTCCAGAAAAAGTTTTGGAGCATATGCTGGATATCTTTGCTGTTATTGGAGAGTCAGCAGTCACACAGATTGATAGCCATTCACAGCGTGTGTTTGAGGATCTTTTATCTACAGTTGTTCCTTGTTGGCTGTCTGGGGCAGGCAGCAATGACAAATTGCTGCAGATTTTTGTTAATGTACTGCCTGAAGTTGCTGAATATAGAAGGCTATCAATTGTTGTGTACCTACTGAGGACTTTGGGAGAGTCAAATAGCTTGGCTTCATTACTTGTTCTTCTTTTCCGTTCACTAATTTCAAGAAAAGGGTCATCTTGGTTTGATAATGTGCATGCTTCAGATAGCTCCACAACCTCTTTACAGAGAGAGTGGGAGTATGCCCTAGCGCTTCAAATATGTGAGCAATATTCATGTATGATATGGCTTCCCTCTCTTGTTATGCTGCTTAAACAAATGGAAACTGGTCAAGAGGTATTTAGAGAATTGTTAATTGCAATGCGGTTCACCTTGCATAAGCTGCATGATCCCGAGTTTGCGCTCAAGATGGCATCTGGGGAAGAGTCGGACAAAATTCAGGCTACATTGGGAGAACTCATGGAGCAGGTTGTCTCTCTCCAGCAACTGGTAGATGCAAGAAGGAAGGATAAAAATATCAATGTCATTAGGAAAGATTTGAAGGAGTGTATGCATGCTGTAATGAGGGCTATTACTGGGGTCATGAACCCTTCGACACTCTTTAATGGCATAACTAAGTTGCTGGGCCACAGAGATCAAAATGTGGAAAAGAAGGCACTTGGACTCCTATGTGAAACCATTAGGAATCTTGACACGGTCAAAGCAAAGCTTAAGTTTAATAAAAGTTGTAGTCTTCATTGGCATCATCTTGATGAGATCTCTCTTGGATCGTTGCGAGTTATGTGTATGAAAATTGTTCAGTTAATTGATGATTCTTCTGATGATTTGGAAGTCTCCTTGAAAGTGGCAGCAGCTTTGGCTCTAGAAGTTTTAGCCCACCGGTTCCCTTCTAACTCTTCCATCTTCAGTGAGTGTCTACCATCTGTTACAAAAAGTATTGGTACGCACGATTTGGCAGTGTCATCTAGCTGCCTTCAAACAACTGGTGCTTTGATCAATGTGCTTGGACCCAAGGCACTCTCTGAGCTTCCTCACATAATGGATAGTTTGATTAAGATTTCTCATGAAGTCCTTGTATCCTCAGATACAAAAGCCATATCCAGTGGTGATAGCCGGCCTGTTGTGTTACAAAAGCCCCAGGAATCTCTTATTCTGTCTATTCTTGTTACTTTGGAGGCTGTTGTGGTTAAGCTAGGGCAGTTCTTAAGCCCATATCTTGAAGATATTACAAGAGTTATGGTGCTTGATCTTGATTATGCGTTAGGATCTGATCAGAAGCTGAAAATGCGAGCTGATTCAGTACGAAAGCTCATCACCGAGAACATCACAGTTCGACTTGCTCTACCGCCCTTGCTAAACATATACTCTAGCACAGTTGAGTCTGGGGATTCCAGTTTATTAATTTATTTTGGAATGCTGGCCAACATGATTGGAAGAATGGATAGAACATCTGTTGGTGGTTACCATGCTAAGATTTTTGAACGGTGCTTGATTGCTCTTGATCTACGCCGTCAACATCCGGCTTCTGTTCAAAGAATTGATGATGTAGAGAAAAGTGTATTCGCTGCAATGATTTCTCTCACTATGAAGCTCACTGAGACGATGTTTAGACCTCTTTTCATTAGGAGTATTGATTGGGCAAACTCAGATGTGGAAGATACTTCTTCTGCAGGATATATACCGAGGGCTATATCTTTCTATGGCCTGGTAAATAAACTTGCGGAAAACCATAGGTCTCTTTTTGTTCCTTATTTCAAATACTTGCTGGAGAATTGTGTACATTATCTTACTGTCGCTGGAGATGCAAAGCCTGGTTTAACCCGAAAGAAGAAGGCCAAGATTCAGGAATCCGATAACAGCATGTTCCTTGGAAACTGGCATCTTAGAGCGCTGGTCTTATCATCATTACATAAATGTTTTCTCTATGATACGGGAAGCATGAAGTTTCTTGATTCTTCCAATTTTCAGGTTCTACTGAAGCCCATTGTTTCCCAGCTTGTTATAGAACCTCCAGTTTCTCTAGAGGAGCATTCTGACATTCCGTCTGTGAAAGAAGTTGATGAATTATTGGTTGTTTGTGTTGGTCAAATGGCTGTGACTGCAGGAAGTGATCTTCTATGGAAGCCCTTGAATTATGAGGTGCTGATGCAGACACGCAGTGACAAGGTCCGTGCAAGAATTTTGGGCCTGAGAATTATTAAATATCTTGTGCAGCATCTAAGAGAAGAATATCTGGTATTTGTTCCAGAAACAGTTCCCTTCTTTGCTGAGTTGCTTGAGGATGTCGAGCCTTCTGTTAAATCTCTGGCACAAGAAATCTTCAACGAACTGAGCACCATGACTGGTGAAGACCTCTCACAGTATATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006355 GO:0006356 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034455 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0045893 GO:0045935 GO:0045943 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

BP28CT U3snoRNP10

Protein Analysis

2117

Amino Acids

237.3

Weight (kDa)

6.44

Isoelectric Point (pI)

44.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U3snoRNP10	PF12397	243 - 357	7.9e-15	U3 small nucleolar RNA-associated protein 10
ARM_At3g06530	PF24477	628 - 820	8.1e-81	At3g06530-like, ARM repeats
HEAT_HEATR1	PF23243	1334 - 1520	3e-66	HEATR1-like, HEAT repeats
BP28CT	PF08146	1814 - 1974	7.5e-40	BP28CT (NUC211) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06530 AT3G06530 AT3G06530 AT3G06530 AT3G06530
fragaria_vesca	FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990
malus_domestica	MD07G1249300.v1.1
prunus_persica	Prupe.2G273000_v2.0.a1 Prupe.2G273000_v2.0.a1 Prupe.2G273000_v2.0.a1
pyrus_communis	pycom01g18810 pycom01g18840 pycom05g24490 pycom07g22250 pycom07g22260
rosa_chinensis	RchiOBHm_Chr1g0373711 RchiOBHm_Chr1g0373721 RchiOBHm_Chr5g0059891 RchiOBHm_Chr7g0224071
rosa_laevigata	RLG00000026806
rosa_multiflora	Rmu_co8395535.1_g000001 Rmu_sc0002606.1_g000003 Rmu_sc0002606.1_g000005 Rmu_sc0010519.1_g000004 Rmu_sc0023430.1_g000002
rosa_roxburghii	Rroxscaffold_4G00284050 Rroxscaffold_5G00353230
rosa_rugosa	Rorug01G0379200
rosa_samantha	Rh1AG388500 Rh1BG352900 Rh1CG365800 Rh1DG383300 Rh3AG266200 Rh3DG308600
rosa_wichuraiana	Rw1G034670 Rw3G029530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	162, 2762
Acc36I	ACCTGC	1 cut(s)	4441
AccB7I	CCANNNNNTGG	3 cut(s)	3148, 3615, 4471
AccBSI	CCGCTC	2 cut(s)	193, 1580
AccI	GTMKAC	2 cut(s)	54, 4900
AccIII	TCCGGA	1 cut(s)	1432
AciI	CCGC	8 cut(s)	76, 120, 193, 367, 1580, 4348, 5330, 5705
AclI	AACGTT	1 cut(s)	1768
AclWI	GGATC	4 cut(s)	3960, 4367, 4759, 5257
AcoI	YGGCCR	3 cut(s)	1871, 1950, 5403
AcuI	CTGAAG	9 cut(s)	875, 882, 992, 1535, 3272, 4059, 4170, 4873, 5981
AdeI	CACNNNGTG	3 cut(s)	2448, 3941, 6143
AfeI	AGCGCT	2 cut(s)	4236, 5874
AfiI	CCNNNNNNNGG	7 cut(s)	115, 192, 235, 3091, 3148, 3615, 4471
AflII	CTTAAG	2 cut(s)	4694, 5188
AgeI	ACCGGT	1 cut(s)	4863
AhdI	GACNNNNNGTC	3 cut(s)	1479, 1600, 6025
AhlI	ACTAGT	1 cut(s)	1961
AjnI	CCWGG	7 cut(s)	1924, 2514, 2628, 3647, 5121, 5688, 5794
Alw21I	GWGCWC	5 cut(s)	333, 418, 2427, 3659, 6320
Alw26I	GTCTC	6 cut(s)	425, 2338, 4462, 4822, 5576, 5724
AlwI	GGATC	4 cut(s)	3960, 4367, 4759, 5257
AlwNI	CAGNNNCTG	3 cut(s)	3682, 4471, 5263
Ama87I	CYCGRG	2 cut(s)	353, 4376
Aor13HI	TCCGGA	1 cut(s)	1432
Aor51HI	AGCGCT	2 cut(s)	4236, 5874
ArsI	GACNNNNNNTTYG	2 cut(s)	128, 160
AseI	ATTAAT	5 cut(s)	461, 845, 2733, 3759, 5384
AsiGI	ACCGGT	1 cut(s)	4863
Asp700I	GAANNNNTTC	4 cut(s)	709, 2499, 2901, 6237
AspLEI	GCGC	4 cut(s)	523, 4237, 4387, 5875
AsuC2I	CCSGG	1 cut(s)	819
AsuHPI	GGTGA	7 cut(s)	2074, 2183, 2357, 4345, 5102, 5290, 6341
AsuII	TTCGAA	1 cut(s)	3280
AsuNHI	GCTAGC	1 cut(s)	793
AvaI	CYCGRG	2 cut(s)	353, 4376
AvaII	GGWCC	7 cut(s)	1171, 2764, 2855, 3139, 3625, 4991, 6151
BaeGI	GKGCMC	1 cut(s)	3787
BalI	TGGCCA	3 cut(s)	1873, 1952, 5405
BanII	GRGCYC	1 cut(s)	333
BbsI	GAAGAC	8 cut(s)	1475, 2147, 2519, 2543, 3189, 3260, 4709, 6339
Bbv12I	GWGCWC	5 cut(s)	333, 418, 2427, 3659, 6320
BceAI	ACGGC	6 cut(s)	134, 406, 660, 1437, 3562, 5478
BcgI	CGANNNNNNTGC	2 cut(s)	536, 570
BciT130I	CCWGG	7 cut(s)	1926, 2516, 2630, 3649, 5123, 5690, 5796
BciVI	GTATCC	1 cut(s)	5071
BclI	TGATCA	5 cut(s)	630, 921, 2881, 4977, 5254
BcnI	CCSGG	1 cut(s)	819
BcoDI	GTCTC	6 cut(s)	425, 2338, 4462, 4822, 5576, 5724
BcuI	ACTAGT	1 cut(s)	1961
BfmI	CTRYAG	8 cut(s)	1078, 1992, 2181, 2325, 3963, 4013, 5652, 6084
BfoI	RGCGCY	3 cut(s)	524, 4238, 5876
BfrI	CTTAAG	2 cut(s)	4694, 5188
BfuAI	ACCTGC	1 cut(s)	4441
BfuI	GTATCC	1 cut(s)	5071
BglII	AGATCT	1 cut(s)	4740
BlpI	GCTNAGC	1 cut(s)	2828
BmcAI	AGTACT	3 cut(s)	302, 359, 1638
Bme1390I	CCNGG	8 cut(s)	819, 1926, 2516, 2630, 3649, 5123, 5690, 5796
Bme18I	GGWCC	7 cut(s)	1171, 2764, 2855, 3139, 3625, 4991, 6151
BmeRI	GACNNNNNGTC	3 cut(s)	1479, 1600, 6025
BmeT110I	CYCGRG	2 cut(s)	353, 4376
BmiI	GGNNCC	6 cut(s)	197, 3177, 3517, 3576, 4868, 4993
BmrFI	CCNGG	8 cut(s)	819, 1926, 2516, 2630, 3649, 5123, 5690, 5796
BmrI	ACTGGG	2 cut(s)	16, 4569
BmtI	GCTAGC	1 cut(s)	797
BmuI	ACTGGG	2 cut(s)	16, 4569
BpiI	GAAGAC	8 cut(s)	1475, 2147, 2519, 2543, 3189, 3260, 4709, 6339
BplI	GAGNNNNNCTC	2 cut(s)	3550, 3582
BpmI	CTGGAG	7 cut(s)	3113, 3162, 3755, 4448, 5771, 5802, 5979
Bpu10I	CCTNAGC	2 cut(s)	1857, 2369
Bpu1102I	GCTNAGC	1 cut(s)	2828
Bpu14I	TTCGAA	1 cut(s)	3280
BpuEI	CTTGAG	6 cut(s)	188, 325, 329, 752, 4373, 6281
BpuMI	CCSGG	1 cut(s)	819
BsaAI	YACGTR	1 cut(s)	3485
BsaBI	GATNNNNATC	2 cut(s)	1273, 1560
BsaI	GGTCTC	2 cut(s)	425, 5724
BsaJI	CCNNGG	7 cut(s)	1494, 2006, 3523, 4995, 5121, 5666, 5851
BsaWI	WCCGGW	2 cut(s)	1432, 4863
BsaXI	ACNNNNNCTCC	6 cut(s)	799, 829, 3260, 3290, 4632, 4662
Bsc4I	CCNNNNNNNGG	7 cut(s)	115, 192, 235, 3091, 3148, 3615, 4471
Bse118I	RCCGGY	3 cut(s)	612, 4863, 5097
Bse3DI	GCAATG	4 cut(s)	554, 4006, 4350, 5559
Bse8I	GATNNNNATC	2 cut(s)	1273, 1560
BseAI	TCCGGA	1 cut(s)	1432
BseBI	CCWGG	7 cut(s)	1926, 2516, 2630, 3649, 5123, 5690, 5796
BseDI	CCNNGG	7 cut(s)	1494, 2006, 3523, 4995, 5121, 5666, 5851
BseJI	GATNNNNATC	2 cut(s)	1273, 1560
BseLI	CCNNNNNNNGG	7 cut(s)	115, 192, 235, 3091, 3148, 3615, 4471
BseMI	GCAATG	4 cut(s)	554, 4006, 4350, 5559
BseRI	GAGGAG	1 cut(s)	6023
BseSI	GKGCMC	1 cut(s)	3787
BseYI	CCCAGC	3 cut(s)	1236, 4606, 5976
BsgI	GTGCAG	5 cut(s)	537, 563, 3123, 3284, 6215
BshTI	ACCGGT	1 cut(s)	4863
BsiHKAI	GWGCWC	5 cut(s)	333, 418, 2427, 3659, 6320
BsiHKCI	CYCGRG	2 cut(s)	353, 4376
BsiSI	CCGG	6 cut(s)	613, 819, 1433, 4864, 5098, 5504
BslFI	GGGAC	4 cut(s)	4, 1029, 3329, 3575
BslI	CCNNNNNNNGG	7 cut(s)	115, 192, 235, 3091, 3148, 3615, 4471
BsmAI	GTCTC	6 cut(s)	425, 2338, 4462, 4822, 5576, 5724
BsmBI	CGTCTC	1 cut(s)	5576
BsmFI	GGGAC	4 cut(s)	4, 1029, 3329, 3575
BsmI	GAATGC	3 cut(s)	1741, 5403, 6013
Bso31I	GGTCTC	2 cut(s)	425, 5724
BsoBI	CYCGRG	2 cut(s)	353, 4376
Bsp119I	TTCGAA	1 cut(s)	3280
Bsp1286I	GDGCHC	6 cut(s)	333, 418, 2427, 3659, 3787, 6320
Bsp13I	TCCGGA	1 cut(s)	1432
Bsp1407I	TGTACA	1 cut(s)	5761
Bsp1720I	GCTNAGC	1 cut(s)	2828
BspACI	CCGC	8 cut(s)	76, 120, 193, 367, 1580, 4348, 5330, 5705
BspEI	TCCGGA	1 cut(s)	1432
BspHI	TCATGA	2 cut(s)	4566, 5047
BspLI	GGNNCC	6 cut(s)	197, 3177, 3517, 3576, 4868, 4993
BspMAI	CTGCAG	5 cut(s)	1996, 2329, 4017, 5656, 6088
BspMI	ACCTGC	1 cut(s)	4441
BspOI	GCTAGC	1 cut(s)	797
BspPI	GGATC	4 cut(s)	3960, 4367, 4759, 5257
BspT104I	TTCGAA	1 cut(s)	3280
BspTI	CTTAAG	2 cut(s)	4694, 5188
BspTNI	GGTCTC	2 cut(s)	425, 5724
BsrBI	CCGCTC	2 cut(s)	193, 1580
BsrDI	GCAATG	4 cut(s)	554, 4006, 4350, 5559
BsrFI	RCCGGY	3 cut(s)	612, 4863, 5097
BsrGI	TGTACA	1 cut(s)	5761
BssAI	RCCGGY	3 cut(s)	612, 4863, 5097
BssECI	CCNNGG	7 cut(s)	1494, 2006, 3523, 4995, 5121, 5666, 5851
BssT1I	CCWWGG	5 cut(s)	1494, 2006, 3523, 4995, 5851
Bst2UI	CCWGG	7 cut(s)	1926, 2516, 2630, 3649, 5123, 5690, 5796
Bst6I	CTCTTC	8 cut(s)	107, 858, 968, 2607, 2892, 3551, 4401, 4885
BstAFI	CTTAAG	2 cut(s)	4694, 5188
BstAPI	GCANNNNNTGC	3 cut(s)	2264, 2954, 4366
BstAUI	TGTACA	1 cut(s)	5761
BstBAI	YACGTR	1 cut(s)	3485
BstBI	TTCGAA	1 cut(s)	3280
BstEII	GGTNACC	1 cut(s)	5444
BstH2I	RGCGCY	3 cut(s)	524, 4238, 5876
BstHHI	GCGC	4 cut(s)	523, 4237, 4387, 5875
BstMAI	GTCTC	6 cut(s)	425, 2338, 4462, 4822, 5576, 5724
BstNI	CCWGG	7 cut(s)	1926, 2516, 2630, 3649, 5123, 5690, 5796
BstNSI	RCATGY	6 cut(s)	1710, 1902, 3131, 4184, 4541, 5848
BstPI	GGTNACC	1 cut(s)	5444
BstSCI	CCNGG	8 cut(s)	817, 1924, 2514, 2628, 3647, 5121, 5688, 5794
BstSFI	CTRYAG	8 cut(s)	1078, 1992, 2181, 2325, 3963, 4013, 5652, 6084
BstSLI	GKGCMC	1 cut(s)	3787
BstV2I	GAAGAC	8 cut(s)	1475, 2147, 2519, 2543, 3189, 3260, 4709, 6339
BstX2I	RGATCY	3 cut(s)	3952, 4740, 5249
BstXI	CCANNNNNNTGG	1 cut(s)	1948
BstYI	RGATCY	3 cut(s)	3952, 4740, 5249
BsuI	GTATCC	1 cut(s)	5071
BtgZI	GCGATG	1 cut(s)	2333
BtsI	GCAGTG	4 cut(s)	3111, 3680, 4947, 6148
BveI	ACCTGC	1 cut(s)	4441
CaiI	CAGNNNCTG	3 cut(s)	3682, 4471, 5263
CciI	TCATGA	2 cut(s)	4566, 5047
CfoI	GCGC	4 cut(s)	523, 4237, 4387, 5875
Cfr10I	RCCGGY	3 cut(s)	612, 4863, 5097
CseI	GACGC	4 cut(s)	6, 2056, 3051, 3194
CspAI	ACCGGT	1 cut(s)	4863
DraIII	CACNNNGTG	3 cut(s)	2448, 3941, 6143
DrdI	GACNNNNNNGTC	2 cut(s)	162, 2762
DriI	GACNNNNNGTC	3 cut(s)	1479, 1600, 6025
DseDI	GACNNNNNNGTC	2 cut(s)	162, 2762
EaeI	YGGCCR	3 cut(s)	1871, 1950, 5403
Eam1104I	CTCTTC	8 cut(s)	107, 858, 968, 2607, 2892, 3551, 4401, 4885
Eam1105I	GACNNNNNGTC	3 cut(s)	1479, 1600, 6025
EarI	CTCTTC	8 cut(s)	107, 858, 968, 2607, 2892, 3551, 4401, 4885
Ecl136II	GAGCTC	1 cut(s)	331
Eco130I	CCWWGG	5 cut(s)	1494, 2006, 3523, 4995, 5851
Eco24I	GRGCYC	1 cut(s)	333
Eco31I	GGTCTC	2 cut(s)	425, 5724
Eco32I	GATATC	6 cut(s)	127, 1271, 2176, 2457, 3703, 3886
Eco47I	GGWCC	7 cut(s)	1171, 2764, 2855, 3139, 3625, 4991, 6151
Eco47III	AGCGCT	2 cut(s)	4236, 5874
Eco53kI	GAGCTC	1 cut(s)	331
Eco57I	CTGAAG	9 cut(s)	875, 882, 992, 1535, 3272, 4059, 4170, 4873, 5981
Eco88I	CYCGRG	2 cut(s)	353, 4376
Eco91I	GGTNACC	1 cut(s)	5444
EcoICRI	GAGCTC	1 cut(s)	331
EcoO109I	RGGNCCY	1 cut(s)	1171
EcoO65I	GGTNACC	1 cut(s)	5444
EcoRI	GAATTC	2 cut(s)	2920, 3304
EcoRII	CCWGG	7 cut(s)	1924, 2514, 2628, 3647, 5121, 5688, 5794
EcoRV	GATATC	6 cut(s)	127, 1271, 2176, 2457, 3703, 3886
EcoT14I	CCWWGG	5 cut(s)	1494, 2006, 3523, 4995, 5851
EcoT22I	ATGCAT	3 cut(s)	595, 1664, 4539
EcoT38I	GRGCYC	1 cut(s)	333
ErhI	CCWWGG	5 cut(s)	1494, 2006, 3523, 4995, 5851
Esp3I	CGTCTC	1 cut(s)	5576
FaqI	GGGAC	4 cut(s)	4, 1029, 3329, 3575
FauNDI	CATATG	1 cut(s)	3876
FbaI	TGATCA	5 cut(s)	630, 921, 2881, 4977, 5254
FblI	GTMKAC	2 cut(s)	54, 4900
FriOI	GRGCYC	1 cut(s)	333
GlaI	GCGC	4 cut(s)	522, 4236, 4386, 5874
GsaI	CCCAGC	3 cut(s)	1240, 4610, 5980
GsuI	CTGGAG	7 cut(s)	3113, 3162, 3755, 4448, 5771, 5802, 5979
HaeII	RGCGCY	3 cut(s)	524, 4238, 5876
HapII	CCGG	6 cut(s)	613, 819, 1433, 4864, 5098, 5504
HgaI	GACGC	4 cut(s)	6, 2056, 3051, 3194
HhaI	GCGC	4 cut(s)	523, 4237, 4387, 5875
Hin6I	GCGC	4 cut(s)	521, 4235, 4385, 5873
HinP1I	GCGC	4 cut(s)	521, 4235, 4385, 5873
HincII	GTYRAC	4 cut(s)	55, 1075, 2692, 5498
HindII	GTYRAC	4 cut(s)	55, 1075, 2692, 5498
HindIII	AAGCTT	2 cut(s)	3587, 4691
HpaII	CCGG	6 cut(s)	613, 819, 1433, 4864, 5098, 5504
HphI	GGTGA	7 cut(s)	2074, 2183, 2357, 4345, 5102, 5290, 6341
Hpy99I	CGWCG	3 cut(s)	70, 191, 1452
HpyCH4IV	ACGT	4 cut(s)	1768, 2436, 3451, 3484
HpySE526I	ACGT	4 cut(s)	1768, 2436, 3451, 3484
HspAI	GCGC	4 cut(s)	521, 4235, 4385, 5873
Kpn2I	TCCGGA	1 cut(s)	1432
KroI	GCCGGC	1 cut(s)	5097
KroNI	GCCGGC	1 cut(s)	5099
Ksp22I	TGATCA	5 cut(s)	630, 921, 2881, 4977, 5254
MaeII	ACGT	4 cut(s)	1768, 2436, 3451, 3484
MbiI	CCGCTC	2 cut(s)	193, 1580
MfeI	CAATTG	2 cut(s)	3161, 4065
MflI	RGATCY	3 cut(s)	3952, 4740, 5249
MhlI	GDGCHC	6 cut(s)	333, 418, 2427, 3659, 3787, 6320
MlsI	TGGCCA	3 cut(s)	1873, 1952, 5405
MluNI	TGGCCA	3 cut(s)	1873, 1952, 5405
MmeI	TCCRAC	4 cut(s)	1347, 1572, 3029, 4392
Mox20I	TGGCCA	3 cut(s)	1873, 1952, 5405
Mph1103I	ATGCAT	3 cut(s)	595, 1664, 4539
MroI	TCCGGA	1 cut(s)	1432
MroNI	GCCGGC	1 cut(s)	5097
MroXI	GAANNNNTTC	4 cut(s)	709, 2499, 2901, 6237
MscI	TGGCCA	3 cut(s)	1873, 1952, 5405
MslI	CAYNNNNRTG	3 cut(s)	1758, 1946, 4734
Msp20I	TGGCCA	3 cut(s)	1873, 1952, 5405
MspA1I	CMGCKG	1 cut(s)	884
MspCI	CTTAAG	2 cut(s)	4694, 5188
MspI	CCGG	6 cut(s)	613, 819, 1433, 4864, 5098, 5504
MspR9I	CCNGG	8 cut(s)	819, 1926, 2516, 2630, 3649, 5123, 5690, 5796
MunI	CAATTG	2 cut(s)	3161, 4065
Mva1269I	GAATGC	3 cut(s)	1741, 5403, 6013
MvaI	CCWGG	7 cut(s)	1926, 2516, 2630, 3649, 5123, 5690, 5796
NaeI	GCCGGC	1 cut(s)	5099
NciI	CCSGG	1 cut(s)	819
NdeI	CATATG	1 cut(s)	3876
NgoMIV	GCCGGC	1 cut(s)	5097
NheI	GCTAGC	1 cut(s)	793
NlaIV	GGNNCC	6 cut(s)	197, 3177, 3517, 3576, 4868, 4993
NsiI	ATGCAT	3 cut(s)	595, 1664, 4539
NspI	RCATGY	6 cut(s)	1710, 1902, 3131, 4184, 4541, 5848
NspV	TTCGAA	1 cut(s)	3280
PacI	TTAATTAA	1 cut(s)	465
PaeI	GCATGC	3 cut(s)	1902, 4184, 4541
PaeR7I	CTCGAG	1 cut(s)	353
PagI	TCATGA	2 cut(s)	4566, 5047
PctI	GAATGC	3 cut(s)	1741, 5403, 6013
PdiI	GCCGGC	1 cut(s)	5099
PdmI	GAANNNNTTC	4 cut(s)	709, 2499, 2901, 6237
PflFI	GACNNNGTC	3 cut(s)	3045, 4679, 6149
PflMI	CCANNNNNTGG	3 cut(s)	3148, 3615, 4471
PfoI	TCCNGGA	1 cut(s)	817
PinAI	ACCGGT	1 cut(s)	4863
Ppu21I	YACGTR	1 cut(s)	3485
PpuMI	RGGWCCY	1 cut(s)	1171
PshBI	ATTAAT	5 cut(s)	461, 845, 2733, 3759, 5384
Psp124BI	GAGCTC	1 cut(s)	333
Psp1406I	AACGTT	1 cut(s)	1768
Psp5II	RGGWCCY	1 cut(s)	1171
Psp6I	CCWGG	7 cut(s)	1924, 2514, 2628, 3647, 5121, 5688, 5794
PspEI	GGTNACC	1 cut(s)	5444
PspFI	CCCAGC	3 cut(s)	1236, 4606, 5976
PspGI	CCWGG	7 cut(s)	1924, 2514, 2628, 3647, 5121, 5688, 5794
PspN4I	GGNNCC	6 cut(s)	197, 3177, 3517, 3576, 4868, 4993
PspPPI	RGGWCCY	1 cut(s)	1171
PsrI	GAACNNNNNNTAC	2 cut(s)	1902, 1934
PstI	CTGCAG	5 cut(s)	1996, 2329, 4017, 5656, 6088
PstNI	CAGNNNCTG	3 cut(s)	3682, 4471, 5263
PsuI	RGATCY	3 cut(s)	3952, 4740, 5249
PsyI	GACNNNGTC	3 cut(s)	3045, 4679, 6149
PvuII	CAGCTG	1 cut(s)	884
RseI	CAYNNNNRTG	3 cut(s)	1758, 1946, 4734
SacI	GAGCTC	1 cut(s)	333
SalI	GTCGAC	1 cut(s)	53
ScaI	AGTACT	3 cut(s)	302, 359, 1638
ScrFI	CCNGG	8 cut(s)	819, 1926, 2516, 2630, 3649, 5123, 5690, 5796
SduI	GDGCHC	6 cut(s)	333, 418, 2427, 3659, 3787, 6320
SfcI	CTRYAG	8 cut(s)	1078, 1992, 2181, 2325, 3963, 4013, 5652, 6084
Sfr274I	CTCGAG	1 cut(s)	353
SfuI	TTCGAA	1 cut(s)	3280
SinI	GGWCC	7 cut(s)	1171, 2764, 2855, 3139, 3625, 4991, 6151
SlaI	CTCGAG	1 cut(s)	353
SmiMI	CAYNNNNRTG	3 cut(s)	1758, 1946, 4734
SmlI	CTYRAG	9 cut(s)	167, 304, 344, 353, 731, 4388, 4694, 5188, 6260
SmoI	CTYRAG	9 cut(s)	167, 304, 344, 353, 731, 4388, 4694, 5188, 6260
SpeI	ACTAGT	1 cut(s)	1961
SphI	GCATGC	3 cut(s)	1902, 4184, 4541
SsiI	CCGC	8 cut(s)	76, 120, 193, 367, 1580, 4348, 5330, 5705
SspI	AATATT	4 cut(s)	2272, 2866, 3078, 4256
SstI	GAGCTC	1 cut(s)	333
StyD4I	CCNGG	8 cut(s)	817, 1924, 2514, 2628, 3647, 5121, 5688, 5794
StyI	CCWWGG	5 cut(s)	1494, 2006, 3523, 4995, 5851
TaiI	ACGT	4 cut(s)	1771, 2439, 3454, 3487
TatI	WGTACW	6 cut(s)	300, 357, 727, 1636, 4030, 5761
TauI	GCSGC	3 cut(s)	79, 122, 1583
TspGWI	ACGGA	7 cut(s)	758, 1042, 2159, 3504, 4124, 6015, 6143
Tth111I	GACNNNGTC	3 cut(s)	3045, 4679, 6149
Van91I	CCANNNNNTGG	3 cut(s)	3148, 3615, 4471
Vha464I	CTTAAG	2 cut(s)	4694, 5188
VpaK11BI	GGWCC	7 cut(s)	1171, 2764, 2855, 3139, 3625, 4991, 6151
VspI	ATTAAT	5 cut(s)	461, 845, 2733, 3759, 5384
XbaI	TCTAGA	2 cut(s)	4846, 6004
XceI	RCATGY	6 cut(s)	1710, 1902, 3131, 4184, 4541, 5848
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1963, 3242
XhoI	CTCGAG	1 cut(s)	353
XmiI	GTMKAC	2 cut(s)	54, 4900
XmnI	GAANNNNTTC	4 cut(s)	709, 2499, 2901, 6237
ZrmI	AGTACT	3 cut(s)	302, 359, 1638
Zsp2I	ATGCAT	3 cut(s)	595, 1664, 4539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.