Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023430.1

Orthogroup ID

OG0002105

Physical Location & Seq

Genomic Coordinates Reverse (-)

15273 .. 16831

Gene Structure 1559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023430.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

atgatatttcatccaagtccatgttccgtatggttaaatgacattgctttgaactgcaggtctctttttgttccttatttcaaatacttgctggagaattgtgtacattatcttactgtctctggagatgcaaagccttctggtttaacccgaaagaagaaggccaagattcaggaatccgataacagcatgttccttggaaactggcatcttagagcgctggtcttatcatcattacataaatgttttctctatgatacgggaagcatgaagtttcttgattcttccaattttcaggttctactgaagcccattgtttcccagcttgttatagaacctccagtttctctagaggagcattctgacattccgtctgtgaaagaagttgatgaattattggttgtttgtgttggtcaaatggctgtgactgcaggaagtgatcttctatggaagcccttgaattatgaggtgctgatgcagacacgcagtgacaaggtccgtgcaagaattttgggcctgagtattattaaatatcttgtggagcatctaagagaagaatatctggtatttgttccagaaacagttcccttctttgctgagttgcttgaggatgtcgagccttctgttaaatctctggcacaagaaatcttcaacgaactgagcaccatgactggtgaagacctctcacagtatatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006355 GO:0006356 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034455 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0045893 GO:0045935 GO:0045943 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

BP28CT U3snoRNP10

Protein Analysis

232

Amino Acids

26.36

Weight (kDa)

5.27

Isoelectric Point (pI)

37.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06530 AT3G06530 AT3G06530 AT3G06530 AT3G06530
fragaria_vesca	FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990
malus_domestica	MD07G1249300.v1.1
prunus_persica	Prupe.2G273000_v2.0.a1 Prupe.2G273000_v2.0.a1 Prupe.2G273000_v2.0.a1
pyrus_communis	pycom01g18810 pycom01g18840 pycom05g24490 pycom07g22250 pycom07g22260
rosa_chinensis	RchiOBHm_Chr1g0373711 RchiOBHm_Chr1g0373721 RchiOBHm_Chr5g0059891 RchiOBHm_Chr7g0224071
rosa_laevigata	RLG00000026806
rosa_multiflora	Rmu_co8395535.1_g000001 Rmu_sc0002606.1_g000003 Rmu_sc0002606.1_g000005 Rmu_sc0010519.1_g000004 Rmu_sc0023430.1_g000002
rosa_roxburghii	Rroxscaffold_4G00284050 Rroxscaffold_5G00353230
rosa_rugosa	Rorug01G0379200
rosa_samantha	Rh1AG388500 Rh1BG352900 Rh1CG365800 Rh1DG383300 Rh3AG266200 Rh3DG308600
rosa_wichuraiana	Rw1G034670 Rw3G029530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	507
AcuI	CTGAAG	1 cut(s)	326
AdeI	CACNNNGTG	1 cut(s)	488
AfaI	GTAC	1 cut(s)	105
AfeI	AGCGCT	1 cut(s)	219
AgsI	TTSAA	4 cut(s)	52, 82, 460, 652
AhdI	GACNNNNNGTC	1 cut(s)	370
AjuI	GAANNNNNNNTTGG	2 cut(s)	7, 39
AluBI	AGCT	1 cut(s)	325
AluI	AGCT	1 cut(s)	325
Alw21I	GWGCWC	1 cut(s)	665
Alw26I	GTCTC	2 cut(s)	66, 124
Aor51HI	AGCGCT	1 cut(s)	219
AoxI	GGCC	2 cut(s)	162, 514
ApoI	RAATTY	1 cut(s)	507
Asp700I	GAANNNNTTC	1 cut(s)	582
AspLEI	GCGC	1 cut(s)	220
AspS9I	GGNCC	2 cut(s)	496, 514
AsuHPI	GGTGA	1 cut(s)	686
AvaII	GGWCC	1 cut(s)	496
BbsI	GAAGAC	1 cut(s)	684
Bbv12I	GWGCWC	1 cut(s)	665
BcoDI	GTCTC	2 cut(s)	66, 124
BfaI	CTAG	1 cut(s)	350
BfmI	CTRYAG	2 cut(s)	55, 429
BfoI	RGCGCY	1 cut(s)	221
BfuAI	ACCTGC	1 cut(s)	48
Bme18I	GGWCC	1 cut(s)	496
BmeRI	GACNNNNNGTC	1 cut(s)	370
BmgT120I	GGNCC	2 cut(s)	496, 514
BmsI	GCATC	4 cut(s)	118, 217, 465, 553
BpiI	GAAGAC	1 cut(s)	684
BpmI	CTGGAG	3 cut(s)	113, 144, 324
BpuEI	CTTGAG	1 cut(s)	626
BsaI	GGTCTC	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	196
Bse1I	ACTGG	3 cut(s)	209, 341, 676
Bse3DI	GCAATG	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	196
BseGI	GGATG	2 cut(s)	10, 616
BseMI	GCAATG	1 cut(s)	42
BseMII	CTCAG	3 cut(s)	509, 588, 650
BseNI	ACTGG	3 cut(s)	209, 341, 676
BseRI	GAGGAG	1 cut(s)	368
BseYI	CCCAGC	1 cut(s)	321
BshFI	GGCC	2 cut(s)	164, 516
BsiHKAI	GWGCWC	1 cut(s)	665
BsmAI	GTCTC	2 cut(s)	66, 124
BsmI	GAATGC	1 cut(s)	358
BsnI	GGCC	2 cut(s)	164, 516
Bso31I	GGTCTC	1 cut(s)	66
Bsp1286I	GDGCHC	1 cut(s)	665
Bsp1407I	TGTACA	1 cut(s)	103
Bsp143I	GATC	1 cut(s)	439
BspANI	GGCC	2 cut(s)	164, 516
BspCNI	CTCAG	3 cut(s)	510, 589, 651
BspMAI	CTGCAG	2 cut(s)	59, 433
BspMI	ACCTGC	1 cut(s)	48
BspTNI	GGTCTC	1 cut(s)	66
BsrDI	GCAATG	1 cut(s)	42
BsrGI	TGTACA	1 cut(s)	103
BsrI	ACTGG	3 cut(s)	209, 341, 676
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	1 cut(s)	439
BssT1I	CCWWGG	1 cut(s)	196
Bst4CI	ACNGT	3 cut(s)	118, 583, 690
BstAUI	TGTACA	1 cut(s)	103
BstDEI	CTNAG	5 cut(s)	212, 518, 548, 597, 659
BstF5I	GGATG	2 cut(s)	10, 616
BstH2I	RGCGCY	1 cut(s)	221
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	1 cut(s)	442
BstMAI	GTCTC	2 cut(s)	66, 124
BstMBI	GATC	1 cut(s)	439
BstMWI	GCNNNNNNNGC	1 cut(s)	428
BstNSI	RCATGY	1 cut(s)	193
BstSFI	CTRYAG	2 cut(s)	55, 429
BstV2I	GAAGAC	1 cut(s)	684
BsuRI	GGCC	2 cut(s)	164, 516
BtsCI	GGATG	2 cut(s)	10, 616
BtsI	GCAGTG	1 cut(s)	493
BtsIMutI	CAGTG	1 cut(s)	493
BveI	ACCTGC	1 cut(s)	48
CfoI	GCGC	1 cut(s)	220
Cfr13I	GGNCC	2 cut(s)	496, 514
Csp6I	GTAC	1 cut(s)	104
CviAII	CATG	4 cut(s)	21, 190, 268, 667
CviJI	RGCY	8 cut(s)	136, 164, 310, 325, 422, 454, 516, 619
CviKI_1	RGCY	8 cut(s)	136, 164, 310, 325, 422, 454, 516, 619
CviQI	GTAC	1 cut(s)	104
DdeI	CTNAG	5 cut(s)	212, 518, 548, 597, 659
DpnI	GATC	1 cut(s)	441
DpnII	GATC	1 cut(s)	439
DraIII	CACNNNGTG	1 cut(s)	488
DriI	GACNNNNNGTC	1 cut(s)	370
Eam1105I	GACNNNNNGTC	1 cut(s)	370
Eco130I	CCWWGG	1 cut(s)	196
Eco31I	GGTCTC	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	496
Eco47III	AGCGCT	1 cut(s)	219
Eco57I	CTGAAG	1 cut(s)	326
EcoT14I	CCWWGG	1 cut(s)	196
ErhI	CCWWGG	1 cut(s)	196
FaeI	CATG	4 cut(s)	24, 193, 271, 670
FatI	CATG	4 cut(s)	20, 189, 267, 666
FokI	GGATG	1 cut(s)	623
FspBI	CTAG	1 cut(s)	350
GlaI	GCGC	1 cut(s)	219
GsaI	CCCAGC	1 cut(s)	325
GsuI	CTGGAG	3 cut(s)	113, 144, 324
HaeII	RGCGCY	1 cut(s)	221
HaeIII	GGCC	2 cut(s)	164, 516
HhaI	GCGC	1 cut(s)	220
Hin1II	CATG	4 cut(s)	24, 193, 271, 670
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HinfI	GANTC	3 cut(s)	169, 176, 281
HphI	GGTGA	1 cut(s)	686
Hpy166II	GTNNAC	1 cut(s)	104
Hpy188I	TCNGA	3 cut(s)	181, 364, 698
Hpy188III	TCNNGA	5 cut(s)	123, 173, 278, 350, 575
Hpy8I	GTNNAC	1 cut(s)	104
HpyAV	CCTTC	4 cut(s)	147, 154, 598, 630
HpyCH4III	ACNGT	3 cut(s)	118, 583, 690
HpyCH4V	TGCA	5 cut(s)	57, 131, 431, 478, 503
HpyF10VI	GCNNNNNNNGC	1 cut(s)	428
HpyF3I	CTNAG	5 cut(s)	212, 518, 548, 597, 659
Hsp92II	CATG	4 cut(s)	24, 193, 271, 670
HspAI	GCGC	1 cut(s)	218
Kzo9I	GATC	1 cut(s)	439
LmnI	GCTCC	2 cut(s)	355, 541
LweI	GCATC	4 cut(s)	118, 217, 465, 553
MaeI	CTAG	1 cut(s)	350
MaeIII	GTNAC	2 cut(s)	424, 488
MalI	GATC	1 cut(s)	441
MboI	GATC	1 cut(s)	439
MboII	GAAGA	6 cut(s)	169, 276, 434, 566, 640, 689
MhlI	GDGCHC	1 cut(s)	665
MluCI	AATT	5 cut(s)	97, 289, 392, 460, 507
MnlI	CCTC	5 cut(s)	346, 348, 460, 601, 692
MroXI	GAANNNNTTC	1 cut(s)	582
MseI	TTAA	4 cut(s)	35, 146, 528, 627
Mva1269I	GAATGC	1 cut(s)	358
MwoI	GCNNNNNNNGC	1 cut(s)	428
NdeII	GATC	1 cut(s)	439
NlaIII	CATG	4 cut(s)	24, 193, 271, 670
NmuCI	GTSAC	2 cut(s)	424, 488
NspI	RCATGY	1 cut(s)	193
PctI	GAATGC	1 cut(s)	358
PdmI	GAANNNNTTC	1 cut(s)	582
PfeI	GAWTC	3 cut(s)	169, 176, 281
PflFI	GACNNNGTC	1 cut(s)	494
PspFI	CCCAGC	1 cut(s)	321
PspPI	GGNCC	2 cut(s)	496, 514
PstI	CTGCAG	2 cut(s)	59, 433
PsyI	GACNNNGTC	1 cut(s)	494
RsaI	GTAC	1 cut(s)	105
RsaNI	GTAC	1 cut(s)	104
SaqAI	TTAA	4 cut(s)	35, 146, 528, 627
Sau3AI	GATC	1 cut(s)	439
Sau96I	GGNCC	2 cut(s)	496, 514
SduI	GDGCHC	1 cut(s)	665
SetI	ASST	7 cut(s)	62, 300, 327, 340, 471, 498, 684
SfaNI	GCATC	4 cut(s)	118, 217, 465, 553
SfcI	CTRYAG	2 cut(s)	55, 429
SinI	GGWCC	1 cut(s)	496
SmlI	CTYRAG	1 cut(s)	605
SmoI	CTYRAG	1 cut(s)	605
Sse9I	AATT	5 cut(s)	97, 289, 392, 460, 507
SspMI	CTAG	1 cut(s)	350
StyI	CCWWGG	1 cut(s)	196
TaaI	ACNGT	3 cut(s)	118, 583, 690
TaqI	TCGA	1 cut(s)	615
TasI	AATT	5 cut(s)	97, 289, 392, 460, 507
TatI	WGTACW	1 cut(s)	103
TfiI	GAWTC	3 cut(s)	169, 176, 281
Tru1I	TTAA	4 cut(s)	35, 146, 528, 627
Tru9I	TTAA	4 cut(s)	35, 146, 528, 627
TscAI	CASTG	1 cut(s)	493
TseFI	GTSAC	2 cut(s)	424, 488
Tsp45I	GTSAC	2 cut(s)	424, 488
TspDTI	ATGAA	2 cut(s)	284, 405
TspGWI	ACGGA	3 cut(s)	16, 360, 488
TspRI	CASTG	1 cut(s)	493
Tth111I	GACNNNGTC	1 cut(s)	494
VpaK11BI	GGWCC	1 cut(s)	496
XapI	RAATTY	1 cut(s)	507
XbaI	TCTAGA	1 cut(s)	349
XceI	RCATGY	1 cut(s)	193
XcmI	CCANNNNNNNNNTGG	1 cut(s)	27
XmnI	GAANNNNTTC	1 cut(s)	582
XspI	CTAG	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.