Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002105

Physical Location & Seq

Genomic Coordinates Reverse (-)

49232184 .. 49233428

Gene Structure 1245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0379200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGTTAAAGAAGAATTCAGAATGCACTGCATCTGCTTCGGAATGGGTTGGAGGAATGTCCCCTGGCATACTGGATGATGTAATCAGACGTCTCACAGAGGTCCAATCAGCAAGGCCGGGGAAGCAGGTCCATCTCTCGCAGTCTGAGATCCAGCAGCTTTGTGTAGCTTCCAAAGACATCTTCCTTCAACAGCCCAATTTGCTGGAGCTTAAAGGCCCTGTCAGTATTTGTGGCAACATCAATGGGCAATACTCTGACCTGTTGAGGCTCTTTGAACATGGTGGTTTTCCTCCTAGTGCAAATTATCTATTCCTAGGTGGTTATGTGGATTATGGGAAGCAAAGTATAGAAACAATGTGCCTCTTGCTTGCTTATAAAATCAAACATCCGGAGAACTTCTTTCCCCTTAGAGGGAATCATGAATGTGCTTCTATCAACCTAAAACATGGATTTTATGATGAATGCAAGCGGCGGTTCAATGTGAGAATATGGAAATGCTTCAATGACTCTTTCAACTGTCTTCCTGCGGCAGCTCTTGTAGATGACAGAATATTATGCGTGCATGGTGGTCTTTCGCCCGATTTGGAGAACTTGGATCAGATCAGAAACTTGCCTCGTCCTAGTAATGTCCCTGATACCGGCTTGCTTTGTGATTTGCTCTGGTCAAGTCCTTGTAGTGATGTTAAGGGATGGGGAACGAACAAACACTCAGAACACGTTGTGGAGTGTGATAGCGGCTATGAATTCTTCGCCAACAGGCAACTTGTTACAATTTCATCAGCCCCCAACTTCCGCGGTGAACATGACAATGCTGGAGCTATGATGCATGTAGATGAGACCTTAATGTGCTCCTTCCAGATTCTCAAGGCAAAAGTCAAGAGATCTGTGTTCAATTTTTCACCAGTCACAAGAGCATTTCATAGAAATCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006355 GO:0006356 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034455 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0045893 GO:0045935 GO:0045943 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

BP28CT U3snoRNP10

Protein Analysis

310

Amino Acids

34.75

Weight (kDa)

6.82

Isoelectric Point (pI)

55.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STPPase_N	PF16891	24 - 71	9.4e-19	Serine-threonine protein phosphatase N-terminal domain
Metallophos	PF00149	76 - 242	4.2e-31	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06530 AT3G06530 AT3G06530 AT3G06530 AT3G06530
fragaria_vesca	FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990
malus_domestica	MD07G1249300.v1.1
prunus_persica	Prupe.2G273000_v2.0.a1 Prupe.2G273000_v2.0.a1 Prupe.2G273000_v2.0.a1
pyrus_communis	pycom01g18810 pycom01g18840 pycom05g24490 pycom07g22250 pycom07g22260
rosa_chinensis	RchiOBHm_Chr1g0373711 RchiOBHm_Chr1g0373721 RchiOBHm_Chr5g0059891 RchiOBHm_Chr7g0224071
rosa_laevigata	RLG00000026806
rosa_multiflora	Rmu_co8395535.1_g000001 Rmu_sc0002606.1_g000003 Rmu_sc0002606.1_g000005 Rmu_sc0010519.1_g000004 Rmu_sc0023430.1_g000002
rosa_roxburghii	Rroxscaffold_4G00284050 Rroxscaffold_5G00353230
rosa_rugosa	Rorug01G0379200
rosa_samantha	Rh1AG388500 Rh1BG352900 Rh1CG365800 Rh1DG383300 Rh3AG266200 Rh3DG308600
rosa_wichuraiana	Rw1G034670 Rw3G029530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	375
AatII	GACGTC	1 cut(s)	91
Acc36I	ACCTGC	1 cut(s)	115
AccII	CGCG	1 cut(s)	795
AccIII	TCCGGA	1 cut(s)	388
AciI	CCGC	6 cut(s)	469, 472, 527, 735, 793, 795
AclWI	GGATC	2 cut(s)	142, 603
AcsI	RAATTY	2 cut(s)	13, 743
AcyI	GRCGYC	1 cut(s)	88
AdeI	CACNNNGTG	1 cut(s)	721
AfiI	CCNNNNNNNGG	3 cut(s)	410, 411, 638
AflIII	ACRYGT	1 cut(s)	715
AgsI	TTSAA	6 cut(s)	188, 275, 478, 502, 514, 892
AjnI	CCWGG	1 cut(s)	61
AjuI	GAANNNNNNNTTGG	2 cut(s)	164, 196
AluBI	AGCT	5 cut(s)	157, 167, 208, 533, 818
AluI	AGCT	5 cut(s)	157, 167, 208, 533, 818
Alw21I	GWGCWC	1 cut(s)	851
Alw26I	GTCTC	2 cut(s)	95, 830
AlwI	GGATC	2 cut(s)	142, 603
Aor13HI	TCCGGA	1 cut(s)	388
AoxI	GGCC	2 cut(s)	113, 214
ApeKI	GCWGC	2 cut(s)	154, 530
ApoI	RAATTY	2 cut(s)	13, 743
Asp700I	GAANNNNTTC	1 cut(s)	497
AspA2I	CCTAGG	1 cut(s)	313
AspS9I	GGNCC	3 cut(s)	100, 127, 215
AsuC2I	CCSGG	1 cut(s)	117
AsuHPI	GGTGA	2 cut(s)	809, 891
AvaII	GGWCC	2 cut(s)	100, 127
AvrII	CCTAGG	1 cut(s)	313
BbsI	GAAGAC	1 cut(s)	512
Bbv12I	GWGCWC	1 cut(s)	851
BbvI	GCAGC	2 cut(s)	166, 542
BccI	CCATC	2 cut(s)	138, 684
BcgI	CGANNNNNNTGC	2 cut(s)	18, 52
BciT130I	CCWGG	1 cut(s)	63
BcnI	CCSGG	1 cut(s)	117
BcoDI	GTCTC	2 cut(s)	95, 830
BfaI	CTAG	3 cut(s)	294, 314, 621
BfuAI	ACCTGC	1 cut(s)	115
BglII	AGATCT	1 cut(s)	881
BisI	GCNGC	5 cut(s)	155, 470, 528, 531, 736
BlnI	CCTAGG	1 cut(s)	313
BlsI	GCNGC	5 cut(s)	156, 471, 529, 532, 737
Bme1390I	CCNGG	2 cut(s)	63, 117
Bme18I	GGWCC	2 cut(s)	100, 127
BmgT120I	GGNCC	3 cut(s)	100, 127, 215
BmrFI	CCNGG	2 cut(s)	63, 117
BmsI	GCATC	2 cut(s)	38, 813
BpiI	GAAGAC	1 cut(s)	512
BpmI	CTGGAG	2 cut(s)	224, 834
BpuEI	CTTGAG	1 cut(s)	848
BpuMI	CCSGG	1 cut(s)	117
BsaHI	GRCGYC	1 cut(s)	88
BsaI	GGTCTC	1 cut(s)	830
BsaJI	CCNNGG	4 cut(s)	61, 116, 313, 793
BsaWI	WCCGGW	1 cut(s)	388
Bsc4I	CCNNNNNNNGG	3 cut(s)	410, 411, 638
Bse118I	RCCGGY	1 cut(s)	638
Bse1I	ACTGG	2 cut(s)	75, 902
BseAI	TCCGGA	1 cut(s)	388
BseBI	CCWGG	1 cut(s)	63
BseDI	CCNNGG	4 cut(s)	61, 116, 313, 793
BseGI	GGATG	3 cut(s)	79, 385, 695
BseLI	CCNNNNNNNGG	3 cut(s)	410, 411, 638
BseMII	CTCAG	2 cut(s)	135, 723
BseNI	ACTGG	2 cut(s)	75, 902
BseXI	GCAGC	2 cut(s)	166, 542
Bsh1236I	CGCG	1 cut(s)	795
BshFI	GGCC	2 cut(s)	115, 216
BsiHKAI	GWGCWC	1 cut(s)	851
BsiSI	CCGG	3 cut(s)	116, 389, 639
BslFI	GGGAC	2 cut(s)	43, 614
BslI	CCNNNNNNNGG	3 cut(s)	410, 411, 638
BsmAI	GTCTC	2 cut(s)	95, 830
BsmBI	CGTCTC	1 cut(s)	95
BsmFI	GGGAC	2 cut(s)	43, 614
BsmI	GAATGC	2 cut(s)	26, 467
BsnI	GGCC	2 cut(s)	115, 216
Bso31I	GGTCTC	1 cut(s)	830
Bsp1286I	GDGCHC	1 cut(s)	851
Bsp13I	TCCGGA	1 cut(s)	388
Bsp143I	GATC	4 cut(s)	147, 595, 600, 881
BspACI	CCGC	6 cut(s)	469, 472, 527, 735, 793, 795
BspANI	GGCC	2 cut(s)	115, 216
BspCNI	CTCAG	2 cut(s)	136, 722
BspEI	TCCGGA	1 cut(s)	388
BspFNI	CGCG	1 cut(s)	795
BspHI	TCATGA	1 cut(s)	418
BspMI	ACCTGC	1 cut(s)	115
BspPI	GGATC	2 cut(s)	142, 603
BspTNI	GGTCTC	1 cut(s)	830
BsrFI	RCCGGY	1 cut(s)	638
BsrI	ACTGG	2 cut(s)	75, 902
BssAI	RCCGGY	1 cut(s)	638
BssECI	CCNNGG	4 cut(s)	61, 116, 313, 793
BssMI	GATC	4 cut(s)	147, 595, 600, 881
BssNI	GRCGYC	1 cut(s)	88
BssT1I	CCWWGG	1 cut(s)	313
Bst2UI	CCWGG	1 cut(s)	63
Bst4CI	ACNGT	1 cut(s)	518
BstACI	GRCGYC	1 cut(s)	88
BstC8I	GCNNGC	4 cut(s)	369, 467, 560, 644
BstDEI	CTNAG	3 cut(s)	144, 407, 709
BstDSI	CCRYGG	1 cut(s)	793
BstF5I	GGATG	3 cut(s)	79, 385, 695
BstFNI	CGCG	1 cut(s)	795
BstKTI	GATC	4 cut(s)	150, 598, 603, 884
BstMAI	GTCTC	2 cut(s)	95, 830
BstMBI	GATC	4 cut(s)	147, 595, 600, 881
BstMWI	GCNNNNNNNGC	2 cut(s)	121, 199
BstNI	CCWGG	1 cut(s)	63
BstNSI	RCATGY	1 cut(s)	830
BstSCI	CCNGG	2 cut(s)	61, 115
BstUI	CGCG	1 cut(s)	795
BstV1I	GCAGC	2 cut(s)	166, 542
BstV2I	GAAGAC	1 cut(s)	512
BstX2I	RGATCY	2 cut(s)	147, 881
BstXI	CCANNNNNNTGG	1 cut(s)	202
BstYI	RGATCY	2 cut(s)	147, 881
BsuRI	GGCC	2 cut(s)	115, 216
BtgI	CCRYGG	1 cut(s)	793
BtsCI	GGATG	3 cut(s)	79, 385, 695
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	1 cut(s)	24
BveI	ACCTGC	1 cut(s)	115
Cac8I	GCNNGC	4 cut(s)	369, 467, 560, 644
CciI	TCATGA	1 cut(s)	418
Cfr10I	RCCGGY	1 cut(s)	638
Cfr13I	GGNCC	3 cut(s)	100, 127, 215
Cfr42I	CCGCGG	1 cut(s)	796
CviAII	CATG	6 cut(s)	278, 419, 446, 563, 803, 827
DdeI	CTNAG	3 cut(s)	144, 407, 709
DpnI	GATC	4 cut(s)	149, 597, 602, 883
DpnII	GATC	4 cut(s)	147, 595, 600, 881
DraIII	CACNNNGTG	1 cut(s)	721
Eco130I	CCWWGG	1 cut(s)	313
Eco31I	GGTCTC	1 cut(s)	830
Eco47I	GGWCC	2 cut(s)	100, 127
EcoO109I	RGGNCCY	1 cut(s)	215
EcoRI	GAATTC	2 cut(s)	13, 743
EcoRII	CCWGG	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	313
EcoT22I	ATGCAT	1 cut(s)	828
ErhI	CCWWGG	1 cut(s)	313
Esp3I	CGTCTC	1 cut(s)	95
FaeI	CATG	6 cut(s)	281, 422, 449, 566, 806, 830
FaqI	GGGAC	2 cut(s)	43, 614
FatI	CATG	6 cut(s)	277, 418, 445, 562, 802, 826
Fnu4HI	GCNGC	5 cut(s)	155, 470, 528, 531, 736
FokI	GGATG	3 cut(s)	86, 372, 702
Fsp4HI	GCNGC	5 cut(s)	155, 470, 528, 531, 736
FspBI	CTAG	3 cut(s)	294, 314, 621
GluI	GCNGC	5 cut(s)	155, 470, 528, 531, 736
GsuI	CTGGAG	2 cut(s)	224, 834
HaeIII	GGCC	2 cut(s)	115, 216
HapII	CCGG	3 cut(s)	116, 389, 639
Hin1I	GRCGYC	1 cut(s)	88
Hin1II	CATG	6 cut(s)	281, 422, 449, 566, 806, 830
HinfI	GANTC	3 cut(s)	415, 506, 859
HpaII	CCGG	3 cut(s)	116, 389, 639
HphI	GGTGA	2 cut(s)	809, 891
Hpy166II	GTNNAC	1 cut(s)	800
Hpy188I	TCNGA	8 cut(s)	19, 40, 86, 145, 256, 600, 605, 712
Hpy188III	TCNNGA	4 cut(s)	389, 419, 856, 877
Hpy8I	GTNNAC	1 cut(s)	800
HpyAV	CCTTC	2 cut(s)	194, 862
HpyCH4III	ACNGT	1 cut(s)	518
HpyCH4IV	ACGT	2 cut(s)	88, 717
HpyCH4V	TGCA	6 cut(s)	24, 29, 299, 465, 562, 826
HpyF10VI	GCNNNNNNNGC	2 cut(s)	121, 199
HpyF3I	CTNAG	3 cut(s)	144, 407, 709
HpySE526I	ACGT	2 cut(s)	88, 717
Hsp92I	GRCGYC	1 cut(s)	88
Hsp92II	CATG	6 cut(s)	281, 422, 449, 566, 806, 830
Kpn2I	TCCGGA	1 cut(s)	388
KspI	CCGCGG	1 cut(s)	796
Kzo9I	GATC	4 cut(s)	147, 595, 600, 881
LmnI	GCTCC	3 cut(s)	205, 815, 854
Lsp1109I	GCAGC	2 cut(s)	166, 542
LweI	GCATC	2 cut(s)	38, 813
MaeI	CTAG	3 cut(s)	294, 314, 621
MaeII	ACGT	2 cut(s)	88, 717
MaeIII	GTNAC	2 cut(s)	766, 904
MalI	GATC	4 cut(s)	149, 597, 602, 883
MboI	GATC	4 cut(s)	147, 595, 600, 881
MboII	GAAGA	4 cut(s)	22, 172, 512, 739
MflI	RGATCY	2 cut(s)	147, 881
MhlI	GDGCHC	1 cut(s)	851
MluCI	AATT	6 cut(s)	13, 196, 301, 743, 771, 892
MlyI	GAGTC	1 cut(s)	500
MmeI	TCCRAC	1 cut(s)	28
MnlI	CCTC	7 cut(s)	44, 91, 258, 300, 371, 404, 624
Mph1103I	ATGCAT	1 cut(s)	828
MroI	TCCGGA	1 cut(s)	388
MroXI	GAANNNNTTC	1 cut(s)	497
MseI	TTAA	5 cut(s)	5, 210, 684, 842, 931
MslI	CAYNNNNRTG	3 cut(s)	423, 807, 831
MspA1I	CMGCKG	1 cut(s)	795
MspI	CCGG	3 cut(s)	116, 389, 639
MspR9I	CCNGG	2 cut(s)	63, 117
Mva1269I	GAATGC	2 cut(s)	26, 467
MvaI	CCWGG	1 cut(s)	63
MvnI	CGCG	1 cut(s)	795
MwoI	GCNNNNNNNGC	2 cut(s)	121, 199
NciI	CCSGG	1 cut(s)	117
NdeII	GATC	4 cut(s)	147, 595, 600, 881
NlaIII	CATG	6 cut(s)	281, 422, 449, 566, 806, 830
NmuCI	GTSAC	1 cut(s)	904
NsiI	ATGCAT	1 cut(s)	828
NspI	RCATGY	1 cut(s)	830
PagI	TCATGA	1 cut(s)	418
PctI	GAATGC	2 cut(s)	26, 467
PdmI	GAANNNNTTC	1 cut(s)	497
PfeI	GAWTC	2 cut(s)	415, 859
PkrI	GCNGC	5 cut(s)	156, 471, 529, 532, 737
PleI	GAGTC	1 cut(s)	500
PpsI	GAGTC	1 cut(s)	500
PsiI	TTATAA	1 cut(s)	375
Psp6I	CCWGG	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	61
PspPI	GGNCC	3 cut(s)	100, 127, 215
PsuI	RGATCY	2 cut(s)	147, 881
RseI	CAYNNNNRTG	3 cut(s)	423, 807, 831
SacII	CCGCGG	1 cut(s)	796
SaqAI	TTAA	5 cut(s)	5, 210, 684, 842, 931
SatI	GCNGC	5 cut(s)	155, 470, 528, 531, 736
Sau3AI	GATC	4 cut(s)	147, 595, 600, 881
Sau96I	GGNCC	3 cut(s)	100, 127, 215
SchI	GAGTC	1 cut(s)	500
ScrFI	CCNGG	2 cut(s)	63, 117
SduI	GDGCHC	1 cut(s)	851
SfaNI	GCATC	2 cut(s)	38, 813
Sfr303I	CCGCGG	1 cut(s)	796
SgrBI	CCGCGG	1 cut(s)	796
SinI	GGWCC	2 cut(s)	100, 127
SmiMI	CAYNNNNRTG	3 cut(s)	423, 807, 831
SmlI	CTYRAG	1 cut(s)	863
SmoI	CTYRAG	1 cut(s)	863
Sse9I	AATT	6 cut(s)	13, 196, 301, 743, 771, 892
SsiI	CCGC	6 cut(s)	469, 472, 527, 735, 793, 795
SspI	AATATT	1 cut(s)	552
SspMI	CTAG	3 cut(s)	294, 314, 621
StyD4I	CCNGG	2 cut(s)	61, 115
StyI	CCWWGG	1 cut(s)	313
TaaI	ACNGT	1 cut(s)	518
TaiI	ACGT	2 cut(s)	91, 720
TasI	AATT	6 cut(s)	13, 196, 301, 743, 771, 892
TauI	GCSGC	3 cut(s)	472, 530, 738
TfiI	GAWTC	2 cut(s)	415, 859
Tru1I	TTAA	5 cut(s)	5, 210, 684, 842, 931
Tru9I	TTAA	5 cut(s)	5, 210, 684, 842, 931
TscAI	CASTG	1 cut(s)	31
TseFI	GTSAC	1 cut(s)	904
TseI	GCWGC	2 cut(s)	154, 530
Tsp45I	GTSAC	1 cut(s)	904
TspDTI	ATGAA	5 cut(s)	435, 474, 756, 765, 908
TspRI	CASTG	1 cut(s)	31
VpaK11BI	GGWCC	2 cut(s)	100, 127
XapI	RAATTY	2 cut(s)	13, 743
XceI	RCATGY	1 cut(s)	830
XmaJI	CCTAGG	1 cut(s)	313
XmnI	GAANNNNTTC	1 cut(s)	497
XspI	CTAG	3 cut(s)	294, 314, 621
ZraI	GACGTC	1 cut(s)	89
Zsp2I	ATGCAT	1 cut(s)	828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.