Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0002105

Physical Location & Seq

Genomic Coordinates Reverse (-)

29913581 .. 29918101

Gene Structure 4521 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG266200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGCGTTCCGCCTTCGATATTCTCTCACAAACACGCCCCGCCGAACCAAAAATGCCTTTCAAGAGGTACGGTGAGGACTACGGCAAGCTTGTCGTCATCCTCGATGTCATTGACCAGAACAGAGCCTGTGTTGCAACTGCTTTACCGCTTATGTTCACTCAGAAGGGACTAATTATTGGACGCTTTCCGCGCAGACGTCCCATTTTGGAAAAGCTTAGTAATTCTTTAGAGATCCTTACAGATATAGATGCTTCAACAAGATCCTATAGTGTGAGGGATAGACTCAGAGAAACTGTGGCCATCGAGGATTCCTGCATGCAAACATGTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0012505 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14e

Protein Analysis

110

Amino Acids

12.57

Weight (kDa)

8.93

Isoelectric Point (pI)

71.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06530 AT3G06530 AT3G06530 AT3G06530 AT3G06530
fragaria_vesca	FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990
malus_domestica	MD07G1249300.v1.1
prunus_persica	Prupe.2G273000_v2.0.a1 Prupe.2G273000_v2.0.a1 Prupe.2G273000_v2.0.a1
pyrus_communis	pycom01g18810 pycom01g18840 pycom05g24490 pycom07g22250 pycom07g22260
rosa_chinensis	RchiOBHm_Chr1g0373711 RchiOBHm_Chr1g0373721 RchiOBHm_Chr5g0059891 RchiOBHm_Chr7g0224071
rosa_laevigata	RLG00000026806
rosa_multiflora	Rmu_co8395535.1_g000001 Rmu_sc0002606.1_g000003 Rmu_sc0002606.1_g000005 Rmu_sc0010519.1_g000004 Rmu_sc0023430.1_g000002
rosa_roxburghii	Rroxscaffold_4G00284050 Rroxscaffold_5G00353230
rosa_rugosa	Rorug01G0379200
rosa_samantha	Rh1AG388500 Rh1BG352900 Rh1CG365800 Rh1DG383300 Rh3AG266200 Rh3DG308600
rosa_wichuraiana	Rw1G034670 Rw3G029530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	199
AccII	CGCG	1 cut(s)	190
AciI	CCGC	4 cut(s)	9, 39, 146, 188
AclWI	GGATC	2 cut(s)	226, 255
AcoI	YGGCCR	1 cut(s)	297
AcyI	GRCGYC	1 cut(s)	196
AfaI	GTAC	1 cut(s)	68
AflIII	ACRYGT	1 cut(s)	323
AgsI	TTSAA	2 cut(s)	61, 255
AluBI	AGCT	2 cut(s)	88, 214
AluI	AGCT	2 cut(s)	88, 214
AlwI	GGATC	2 cut(s)	226, 255
AlwNI	CAGNNNCTG	1 cut(s)	126
AoxI	GGCC	1 cut(s)	297
AspLEI	GCGC	1 cut(s)	192
AsuHPI	GGTGA	1 cut(s)	83
BalI	TGGCCA	1 cut(s)	299
BccI	CCATC	1 cut(s)	308
BceAI	ACGGC	1 cut(s)	97
BcgI	CGANNNNNNTGC	2 cut(s)	73, 107
BfmI	CTRYAG	1 cut(s)	265
BmsI	GCATC	1 cut(s)	238
BsaHI	GRCGYC	1 cut(s)	196
BseGI	GGATG	1 cut(s)	96
BseMII	CTCAG	2 cut(s)	173, 298
Bsh1236I	CGCG	1 cut(s)	190
BshFI	GGCC	1 cut(s)	299
BslFI	GGGAC	2 cut(s)	180, 183
BsmFI	GGGAC	2 cut(s)	180, 183
BsnI	GGCC	1 cut(s)	299
Bsp143I	GATC	2 cut(s)	231, 260
BspACI	CCGC	4 cut(s)	9, 39, 146, 188
BspANI	GGCC	1 cut(s)	299
BspCNI	CTCAG	2 cut(s)	172, 297
BspFNI	CGCG	1 cut(s)	190
BspPI	GGATC	2 cut(s)	226, 255
BssMI	GATC	2 cut(s)	231, 260
BssNI	GRCGYC	1 cut(s)	196
Bst4CI	ACNGT	2 cut(s)	71, 295
BstACI	GRCGYC	1 cut(s)	196
BstC8I	GCNNGC	2 cut(s)	86, 317
BstDEI	CTNAG	3 cut(s)	159, 215, 284
BstF5I	GGATG	1 cut(s)	96
BstFNI	CGCG	1 cut(s)	190
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	2 cut(s)	234, 263
BstMBI	GATC	2 cut(s)	231, 260
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 189
BstNSI	RCATGY	2 cut(s)	319, 327
BstSFI	CTRYAG	1 cut(s)	265
BstUI	CGCG	1 cut(s)	190
BstX2I	RGATCY	2 cut(s)	231, 260
BstYI	RGATCY	2 cut(s)	231, 260
BsuRI	GGCC	1 cut(s)	299
BtsCI	GGATG	1 cut(s)	96
Cac8I	GCNNGC	2 cut(s)	86, 317
CaiI	CAGNNNCTG	1 cut(s)	126
CfoI	GCGC	1 cut(s)	192
CseI	GACGC	1 cut(s)	189
Csp6I	GTAC	1 cut(s)	67
CviAII	CATG	2 cut(s)	316, 324
CviJI	RGCY	4 cut(s)	88, 125, 214, 299
CviKI_1	RGCY	4 cut(s)	88, 125, 214, 299
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	3 cut(s)	159, 215, 284
DpnI	GATC	2 cut(s)	233, 262
DpnII	GATC	2 cut(s)	231, 260
EaeI	YGGCCR	1 cut(s)	297
FaeI	CATG	2 cut(s)	319, 327
FaiI	YATR	5 cut(s)	152, 245, 267, 317, 325
FaqI	GGGAC	2 cut(s)	180, 183
FatI	CATG	2 cut(s)	315, 323
FauI	CCCGC	1 cut(s)	46
FokI	GGATG	1 cut(s)	83
GlaI	GCGC	1 cut(s)	191
HaeIII	GGCC	1 cut(s)	299
HgaI	GACGC	1 cut(s)	189
HhaI	GCGC	1 cut(s)	192
Hin1I	GRCGYC	1 cut(s)	196
Hin1II	CATG	2 cut(s)	319, 327
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HindIII	AAGCTT	2 cut(s)	86, 212
HinfI	GANTC	2 cut(s)	282, 308
HphI	GGTGA	1 cut(s)	83
Hpy166II	GTNNAC	1 cut(s)	156
Hpy188I	TCNGA	2 cut(s)	162, 287
Hpy188III	TCNNGA	1 cut(s)	61
Hpy8I	GTNNAC	1 cut(s)	156
HpyAV	CCTTC	2 cut(s)	22, 157
HpyCH4III	ACNGT	2 cut(s)	71, 295
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	3 cut(s)	134, 315, 319
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 189
HpyF3I	CTNAG	3 cut(s)	159, 215, 284
HpySE526I	ACGT	1 cut(s)	196
Hsp92I	GRCGYC	1 cut(s)	196
Hsp92II	CATG	2 cut(s)	319, 327
HspAI	GCGC	1 cut(s)	190
Kzo9I	GATC	2 cut(s)	231, 260
LpnPI	CCDG	3 cut(s)	128, 139, 325
LweI	GCATC	1 cut(s)	238
MaeII	ACGT	1 cut(s)	196
MalI	GATC	2 cut(s)	233, 262
MboI	GATC	2 cut(s)	231, 260
MflI	RGATCY	2 cut(s)	231, 260
MlsI	TGGCCA	1 cut(s)	299
MluCI	AATT	2 cut(s)	171, 220
MluNI	TGGCCA	1 cut(s)	299
MlyI	GAGTC	1 cut(s)	276
MnlI	CCTC	5 cut(s)	57, 67, 110, 267, 298
Mox20I	TGGCCA	1 cut(s)	299
MscI	TGGCCA	1 cut(s)	299
Msp20I	TGGCCA	1 cut(s)	299
MvnI	CGCG	1 cut(s)	190
MwoI	GCNNNNNNNGC	2 cut(s)	131, 189
NdeII	GATC	2 cut(s)	231, 260
NlaIII	CATG	2 cut(s)	319, 327
NspI	RCATGY	2 cut(s)	319, 327
PaeI	GCATGC	1 cut(s)	319
PciI	ACATGT	1 cut(s)	323
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	308
PleI	GAGTC	1 cut(s)	276
PpsI	GAGTC	1 cut(s)	276
PscI	ACATGT	1 cut(s)	323
PstNI	CAGNNNCTG	1 cut(s)	126
PsuI	RGATCY	2 cut(s)	231, 260
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
Sau3AI	GATC	2 cut(s)	231, 260
SchI	GAGTC	1 cut(s)	276
SetI	ASST	4 cut(s)	68, 90, 199, 216
SfaNI	GCATC	1 cut(s)	238
SfcI	CTRYAG	1 cut(s)	265
SphI	GCATGC	1 cut(s)	319
Sse9I	AATT	2 cut(s)	171, 220
SsiI	CCGC	4 cut(s)	9, 39, 146, 188
TaaI	ACNGT	2 cut(s)	71, 295
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	3 cut(s)	15, 102, 303
TasI	AATT	2 cut(s)	171, 220
TfiI	GAWTC	1 cut(s)	308
XceI	RCATGY	2 cut(s)	319, 327
ZraI	GACGTC	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.