Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002105

Physical Location & Seq

Genomic Coordinates Reverse (-)

30898377 .. 30902624

Gene Structure 4248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00353230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGTTGATCTCCATATTAGATACGATTCCTTCCAAGAATTTTGTTCACCATGTAGTTCAAATGGTCCTATCTTCCTACTTGCAGAAGGCACAGGACATTGAAAATCCAACATTATTTTCATCAGGAATACGTATCAAGCTACCGCTCGACGAGGAAATCCTTATACGTGACCACCTAAACTGTATTTTACTCCTCACTTACTTTGTGAGTTGCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006355 GO:0006356 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034455 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0045893 GO:0045935 GO:0045943 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

BP28CT U3snoRNP10

Protein Analysis

72

Amino Acids

8.2

Weight (kDa)

5.78

Isoelectric Point (pI)

44.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06530 AT3G06530 AT3G06530 AT3G06530 AT3G06530
fragaria_vesca	FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990
malus_domestica	MD07G1249300.v1.1
prunus_persica	Prupe.2G273000_v2.0.a1 Prupe.2G273000_v2.0.a1 Prupe.2G273000_v2.0.a1
pyrus_communis	pycom01g18810 pycom01g18840 pycom05g24490 pycom07g22250 pycom07g22260
rosa_chinensis	RchiOBHm_Chr1g0373711 RchiOBHm_Chr1g0373721 RchiOBHm_Chr5g0059891 RchiOBHm_Chr7g0224071
rosa_laevigata	RLG00000026806
rosa_multiflora	Rmu_co8395535.1_g000001 Rmu_sc0002606.1_g000003 Rmu_sc0002606.1_g000005 Rmu_sc0010519.1_g000004 Rmu_sc0023430.1_g000002
rosa_roxburghii	Rroxscaffold_4G00284050 Rroxscaffold_5G00353230
rosa_rugosa	Rorug01G0379200
rosa_samantha	Rh1AG388500 Rh1BG352900 Rh1CG365800 Rh1DG383300 Rh3AG266200 Rh3DG308600
rosa_wichuraiana	Rw1G034670 Rw3G029530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	145
AciI	CCGC	2 cut(s)	143, 213
AcsI	RAATTY	1 cut(s)	37
AgsI	TTSAA	2 cut(s)	59, 101
AjuI	GAANNNNNNNTTGG	2 cut(s)	100, 132
AluBI	AGCT	1 cut(s)	139
AluI	AGCT	1 cut(s)	139
ApoI	RAATTY	1 cut(s)	37
AspS9I	GGNCC	1 cut(s)	64
AsuHPI	GGTGA	1 cut(s)	38
AvaII	GGWCC	1 cut(s)	64
Bme18I	GGWCC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	64
BsaAI	YACGTR	2 cut(s)	131, 167
BseRI	GAGGAG	1 cut(s)	182
Bsp143I	GATC	1 cut(s)	6
BspACI	CCGC	2 cut(s)	143, 213
BsrBI	CCGCTC	1 cut(s)	145
BssMI	GATC	1 cut(s)	6
Bst4CI	ACNGT	1 cut(s)	182
BstBAI	YACGTR	2 cut(s)	131, 167
BstKTI	GATC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	6
BstSNI	TACGTA	1 cut(s)	131
Cfr13I	GGNCC	1 cut(s)	64
CviAII	CATG	1 cut(s)	50
CviJI	RGCY	1 cut(s)	139
CviKI_1	RGCY	1 cut(s)	139
DpnI	GATC	1 cut(s)	8
DpnII	GATC	1 cut(s)	6
Eco105I	TACGTA	1 cut(s)	131
Eco47I	GGWCC	1 cut(s)	64
FaeI	CATG	1 cut(s)	53
FaiI	YATR	3 cut(s)	14, 51, 164
FatI	CATG	1 cut(s)	49
Hin1II	CATG	1 cut(s)	53
HinfI	GANTC	1 cut(s)	25
HphI	GGTGA	1 cut(s)	38
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188III	TCNNGA	1 cut(s)	123
Hpy8I	GTNNAC	1 cut(s)	46
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	2 cut(s)	39, 79
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4IV	ACGT	2 cut(s)	130, 166
HpyCH4V	TGCA	1 cut(s)	82
HpySE526I	ACGT	2 cut(s)	130, 166
Hsp92II	CATG	1 cut(s)	53
Kzo9I	GATC	1 cut(s)	6
LpnPI	CCDG	2 cut(s)	77, 108
MaeII	ACGT	2 cut(s)	130, 166
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	1 cut(s)	8
MbiI	CCGCTC	1 cut(s)	145
MboI	GATC	1 cut(s)	6
MboII	GAAGA	1 cut(s)	63
MluCI	AATT	1 cut(s)	37
MmeI	TCCRAC	1 cut(s)	131
MnlI	CCTC	2 cut(s)	145, 203
NdeII	GATC	1 cut(s)	6
NlaIII	CATG	1 cut(s)	53
NmuCI	GTSAC	1 cut(s)	167
PfeI	GAWTC	1 cut(s)	25
Ppu21I	YACGTR	2 cut(s)	131, 167
PspPI	GGNCC	1 cut(s)	64
Sau3AI	GATC	1 cut(s)	6
Sau96I	GGNCC	1 cut(s)	64
SetI	ASST	4 cut(s)	133, 141, 169, 177
SgeI	CNNG	9 cut(s)	46, 62, 91, 104, 135, 148, 158, 163, 179
SinI	GGWCC	1 cut(s)	64
SnaBI	TACGTA	1 cut(s)	131
Sse9I	AATT	1 cut(s)	37
SsiI	CCGC	2 cut(s)	143, 213
TaaI	ACNGT	1 cut(s)	182
TaiI	ACGT	2 cut(s)	133, 169
TaqI	TCGA	1 cut(s)	147
TasI	AATT	1 cut(s)	37
TfiI	GAWTC	1 cut(s)	25
TseFI	GTSAC	1 cut(s)	167
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	1 cut(s)	108
VpaK11BI	GGWCC	1 cut(s)	64
XapI	RAATTY	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.