Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002105

Physical Location & Seq

Genomic Coordinates Forward (+)

48498394 .. 48512176

Gene Structure 13783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG352900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 6354 bp

ATGGCGACCTCGATTGCGTCCCAGTTAAAAGTCCTGAAATCGCTGATACAAGTCGACCAAGACCCGTCGCAGAAGCGGCCCTTCACTCGCCCTTCCATCCTCTTCGATCCCAAAGAGGCCGCCGATATCGACATCGACACAATTTTCGCCGTAGGACTTCAAGGTCTTGAGCTTCTTGTTAGTACCGACGAGCGGTTCCGAAACTTTAAGAGTGACTTGTTCAGCTACCAGAGTAAGGAATTGGATAGAGAGTTGATGGGAGTAGAGGAAAACAAACGCATTGATGCTTCGATTAGTAAGTACTTGAGATTGCTGTCAGGGCATTTCGAGCTCCCATCGTCACTCAAGACTCTCGAGTACTTGGTGCGAAGATATAAGATTCATGTGTACAACTTCGAGGAATTGATTTTGTGTGCTCTGCCGTACCATGAGACCCACGCATTTGTTAAAATTGTTCAATTAATTAACTTCGGAAATAGTAAGTGGAAATTTTTAGAGGGCGTGAAAGTTTCTGGTGCAGCGCCACCTAGAAATGTTATAGTGCAGCAATGTATTCGTGACATGGGGGTTTTGGAGGCTTTATTCGACTATGCATCCCCGTCAAAGAAGTATCGGCCTTCAAAGCCCGTGATCAGATTTTGCACGGCAGTTGTTGTTGAGGTTTTGGGTTCTGTTGCATCTGTTGAAAGTCATGTTGTGAAAAGAATCTGTTCACTTATTCATTCTGTACTTGAGGTTGGCACGGATGGACATTCAGAAAACAAGGCTGGTGCTATGATGATTGTTGGTATGCTAGCAAGTAAAGTTACAATATCTCCCGGACTTGTCAAGGGATTGATTTTATTAATTGCTAAAGTTGCTGAAGAGGATGCAAAAGAGTCAGCTGATCTTCAGCTTTTTCGCTTATCACTTATGACTTTGATCAACCTTGTTCAGTTGCAAGTTGTGGATAAGTTTCCCATGAAGGCTCTGAAGAGTTTGATCGGCATTAGGGATTTTGCTGGCATCCTTCTGGGACTTTTCAACAAGTTCAAAATTGATAGATTCTTTTCCGTGCTTTTGGATTCTCTTGTTGACTATAGTTCGTCTGATGAATCTTGCCAGCTTGCGTTGATCTCCATATTAGATACAGTTCCTTCCAAGAATTTTGTTCATCATGTAGTTCCAAAGGTCCTGTCTTCCTGCTTGCAAAAGTCACAGGACATGGAAAATTCAACATTATTTTCATCAGGAAGCTGGGCAGAGAAAGTTTTACTCATTCTTAGAAGATATCCATCTGAACTGCATGGAGCTGCTCACAAATTTCTGGAAAAGAATGTGCAATCTAAGAAACGGGGTTCGGTACATGAAGCTCTGCGTAAAATGTTGGATGGGAATTTGGACAGGTCACTAGCTTGCTCAGAATCAAATTTTTGGTTCAGGTTGCATCATCCAGAGGCTGATGTTCGTCGCCGTACACTTTCTGAAATAAGGACATCAGGTCTTCTGGAAGCCAAGGGTACAAATTCGCAGAGTCTTGTAATCATCCAAGATGGCATATTGCGACAGCTTCAGGATGATGATCTTAGCGTTGTCAGAGCGGCTTTGTCGTTAGACAGATTGTCCAGTTTAATAAACCCATCTGATCTTATTGAAGTACTGGACAATCTGCTTAGAAGATGCATTGGTCTTTTAACAAGGTCATTGGAGAACAATAGCCTAGCATGTGATGTTGCTATTTTGTGCCTAAAGAATGCTGTTGCTGACATCCATGAGAATGTTGAACGTTGCAATAAACTAGCTGCTATGATATTTCCTTTGCTCCTTGTTGTACCTAAGACACAGAGGTTAAATTTGAAAGCATTGGAATTAGCTAAGGCAGTAAAATGGCCACTGTTTGAGAATCTTGCTGCTGCATGCAATACAGAACAAACATTACAACCAGGAAAGTTATCCTCCATTAACATGGCCACCATTACTAGTTTGGCGAGCAGATTCTTGTTGCACCCTGCAGAATTTATGCCTTGGATTGTTCAGAGTTCTAATGACTTTGAGTTGTCAAAGACGCACTTCTTTTTGGTGATGATGCAGACAATTCTGATTGAAAAGGAATCTGCTGAATGTTTGGAACTTTTTGAAGTTTTGTTTCCTGCATTGAAGACGGAATGGGAATCATTTGAGTCTACGGGTGATATCTCTATAGCAGAGTTCAAAACAGAGATGCTGAATTGGGATTGCAGCAGATTTCTTGATAAGCTAGATTCCAATTTGAAAGCAATGAATGCAAATATTCTAATTTGCATCTTTTGGAGGTTGATGGAGGCATTTCTATCTGCGATGCCTGCAGATGTCTCATTGGATGGTGATGGGAAGTGGGTTAGCTGGCTCAGGGAATTGTTTGCCTTCTTCTCAGGCTGTCAGTTTAAGAACATATTTAAGGAGCACCGTCATTACGTTGTCACAAAGTGCAAGATATCTGCTGTTTCTTTCCTTGCCAAGTTTTTCACAGAAGAAGACGTTCCTGTTGCAGTCCAGGTCGAGAGTCTTCACTGTTTTTCCTATCTGTGTCTTCAATCAGAAGTTAGATTGCCAATTCAATTTCTTGCTGAATTTCCATCTCTTCTTGTTCCACTGGCTAGTTGTAACCAGGAGATAAGAAATGTTGCCATGAATTGTATTGAGGGTTTACAGACCTTTTCATCTCATGTTGACTCTTTGAGCAAGAAAAATGGAAACCGTGCAATTCGGATTAATCATCTTGATAAGCTCCTGGACTTGTTGGTCCAGCAGAAAAGGCTAATCCTATCGGACAGGAACTTGCTTCCTTCTCTCTTGGCCTCTTTGCTCAGCCCGTCCTTCCAGAGCTTCTTAGGACCAAAGAATATTGAGATAAGGTTTGATCAATCTACAAGAGAAGAGATTCTTACTTTCATGTTGAATTCTGCCATGAAACTGCCTGATTATGCAAGGCTTGCTATTCTTTCTTTGCTCAGAGGAACAGGCAATGCCATTATACATCATAAAGAAGTTAAGTCATATTTATCTCATCTCTTGGAAAGACGCAGTCGGAGTTTGTCAAAAATTGAAGTTCAGATATTATGCCTTCTACTGGAGTGCTGTGCAGTGCCTTCTTCATCAGACAGGCATGTATTTGAGGACCATTTATTGGAGGCTTTGCAATTGGATGGCTTGGCTCCAGAAGACGCTTCCACCATACAGCCTTGTATTACTGTCCTGCAAAAGCTTAACAGCCAAATTTACAGTGGACTGAAGACAGAAGTGCAGGAGCTTTTGTTCCGAAAACTGGTAGCTGTGTTTCAGAATTCAAATGGGGACATACAAAATGCAACTAGAGCAGCCTTGCAGCGTTTACATATTACTTGCTCCACTATCGTCCACACTCTCGATCACATACTCAAAGATGGAAGTTGTGCAAGTCGTTCAGTGCACGGAACAAAGAAAATGAAACGTCAGAAGTCCACTTCGTCTAGTGACGTGATACGTGACGGAGAAAATGCACTCTCTTTACTTGGTTCCCTCCTTGGTATTTTATTATTTAAGAAAGACATAGAGAAGAGGGACTCTCTATTGGGGCCGTTGTTTAAGCTTCTTTACAAAATCTTTTCCAATGAGTGGGTACAGGACCACTTTAGCATTTCTGATGCCAGGTTGAGCACAGTAAATTACATACAACAGACACTGCTGATAATCTTAGAAGATATCAGTTCTTCACTAATAAGTTCTATTCCACTGGAGGACAACATGGTAAATGAGATTAATGTCAAACATTTGGTTGAGTGTGCCCATTCTGCGAAGGATGGAGTTACTCGCAACCATGTCTTTTCACTGATTTCCTCCATCACAAAGATCGTTCCAGAAAAAGTTTTGGAGCATATGCTGGATATCTTTGCTGTTATTGGAGAGTCAGCAGTCACACAGATTGATAGCCATTCACAGCGTGTGTTTGAGGATCTTTTATCTACAGTTGTTCCTTGTTGGCTGTCTGGGGCAGGCAGCAATGACAAATTGCTGCAGATTTTTGTTAATGTACTGCCTGAAGTTGCTGAATATAGAAGGCTCTCAATTGTTGTGTACCTACTGAGGACTTTGGGAGAGTCAAATAGCTTGGCTTCATTACTTGTTCTTCTTTTCCGTTCACTAATTTCAAGAAAAGGGTCATCTTGGTTTGATAATGTGCATGCTTCAGATAGCTCCACAACCTCTTTACAGAGAGAGTGGGAGTATGCCCTAGCGCTTCAAATATGTGAGCAATATTCATGTATGATATGGCTTCCCCCTCTTGTTATGCTGCTTAAACAAATGGAAACTGGTCAAGAGGTATTTAGAGAATTGTTAATTGCAATGCGGTTCACCTTGCATAAGCTGCAAGATCCCGAGTTTGCGCTCAAGATGGCATCTGGGGAAGAGTCGGACAAAATTCAGGCTACATTGGGAGAACTCATGGAGCAGGTTGTCTCTCTCCAGCAACTGGTAGATGCAAGAAGGAAGGATAAAAATATCAATGTCATTAGGAAAGATTTGAAGGAGTGTATGCATGCTGTAATGAGGGCTATTACTGGGATCATGAACCCTTCGACACTCTTTAATGGCATAACTAAGTTGCTTGGCCACAGAGATCAAAATGTGGAAAAGAAGGCACTTGGACTCCTATGTGAAACCATTAGGAATCTTGACATGGTCAAAGCAAAGCTTAAGTTTAATAAAAGTTGTAGTCTTCATTGGCATCATCTTGATGAGATCTCTCTTGGATCGTTGCGAGTTATGTGTATGAAAATTGTTCAGTTAATTGATGATTCTTCTGATGATTTGGAAGTCTCCTTGAAAGTGGCAGCAGCTTTGGCTCTAGAAGTTTTAGCCCACCGGTTCCCTTCTAACTCTTCCATCTTCAGTGAGTGTCTACCATCTGTTACAAAAAGTATTGGTACGCACGATTTGGCAGTGTCATCTAGCTGCCTTCAAACAACTGGTGCTTTGATCAATGTGCTTGGACCCAAGGCACTCTCTGAGCTTCCTCACATAATGGATAGTTTGATTAAGATTTCTCGTGAAGTCCTTGTATCCTCGGATACAAAAGCCATATCCAGTGGTGATAGCCGGCCTGTTGTGTTACAAAAACCCCAGGAATCTCTTATTCTGTCTATTCTTGTTACTTTGGAGGCTGTTGTGGTTAAGCTAGGGCAGTTCTTAAGCCCATATCTTGAAGATATTACAAGAGTTATGGTGCTCGATCTTGATTATGCGTTAGGATCTGATCAGAAGCTGAAAATGCGAGCTGATTCAGTACGAAAGCTCATCACCGAGAACATCACAGTTCGACTTGCTCTACCGCCCTTGCTAAACATATACTCTAGCACAGTTGAGTCTGGGGATTCCAGTTTATTAATTTATTTTGGAATGCTGGCCAACATGATTGGAAGAATGGATAGAACATCTGTTGGTGGTTACCATGCTAGGATTTTTGAACGGTGCTTGATTGCTCTTGATCTACGCCGTCAACATCCGGCTTCTGTTCAAAGAATTGATGATGTAGAGAAAAGTGTATTCGCTGCTATGATTTCTCTCACTATGAAGCTCACTGAGACGATGTTTAGACCTCTTTTCATTAGGAGTATTGATTGGGCAAACTCAGATGTGGAAGATACTTCTTCTGCAGGATATATACCGAGGGCTATATCTTTCTATGGCCTGGTAAATAAACTTGCGGAAAACCATAGGTCTCTTTTTGTTCCTTATTTCAAATACTTGCTGGAGAATTGTGTACATTATCTTACTGTCGCTGGAGATGCAAAGCCTTCTGGTTTAACACGAAAGAAGAAGGCCAAGATTCAGGAATCCGATAACAGCATGTTCCTTGGAAACTGGCATCTTAGAGCGCTGGTCTTATCATCATTACATAAATGTTTTCTCTATGATACGGGAAGCATGAAGTTTCTTGATTCTTCCAATTTTCAGGTTCTACTGAAGCCCATTGTTTCCCAGCTTGTTATAGAACCTCCAGTTTCTCTAGAGGAGCATTCTGACATTCCGTCTGTGAAAGAAGTTGATGAATTATTGGTTGTTTGTGTTGGTCAAATGGCTGTGACTGCAGGAAGTGATCTTCTATGGAAGCCCTTGAATTATGAGGTGCTGATGCAGACACGCAGTGACAAGGTCCGTGCAAGAATTTTGGGCCTGAGAATTATTAAATATCTTGTGGAGCATCTAAGAGAAGAATATCTGGTATTTGTTCCAGAAACAGTTCCCTTCTTTGCTGAGTTGCTCGAGGATGTCGAGCCTTCTGTTAAATCTCTGGCACAAGAAATATTCAACGAACTGAGCACCATGACTGGTGAAGACCTCTCACAGTATATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006355 GO:0006356 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034455 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0045893 GO:0045935 GO:0045943 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

BP28CT U3snoRNP10

Protein Analysis

2117

Amino Acids

237.66

Weight (kDa)

6.53

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U3snoRNP10	PF12397	233 - 357	5e-15	U3 small nucleolar RNA-associated protein 10
ARM_At3g06530	PF24477	627 - 819	2e-80	At3g06530-like, ARM repeats
HEAT_HEATR1	PF23243	1333 - 1519	1.3e-65	HEATR1-like, HEAT repeats
BP28CT	PF08146	1813 - 1974	1.7e-39	BP28CT (NUC211) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06530 AT3G06530 AT3G06530 AT3G06530 AT3G06530
fragaria_vesca	FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990
malus_domestica	MD07G1249300.v1.1
prunus_persica	Prupe.2G273000_v2.0.a1 Prupe.2G273000_v2.0.a1 Prupe.2G273000_v2.0.a1
pyrus_communis	pycom01g18810 pycom01g18840 pycom05g24490 pycom07g22250 pycom07g22260
rosa_chinensis	RchiOBHm_Chr1g0373711 RchiOBHm_Chr1g0373721 RchiOBHm_Chr5g0059891 RchiOBHm_Chr7g0224071
rosa_laevigata	RLG00000026806
rosa_multiflora	Rmu_co8395535.1_g000001 Rmu_sc0002606.1_g000003 Rmu_sc0002606.1_g000005 Rmu_sc0010519.1_g000004 Rmu_sc0023430.1_g000002
rosa_roxburghii	Rroxscaffold_4G00284050 Rroxscaffold_5G00353230
rosa_rugosa	Rorug01G0379200
rosa_samantha	Rh1AG388500 Rh1BG352900 Rh1CG365800 Rh1DG383300 Rh3AG266200 Rh3DG308600
rosa_wichuraiana	Rw1G034670 Rw3G029530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	162, 2759
Acc36I	ACCTGC	1 cut(s)	4438
AccB7I	CCANNNNNTGG	3 cut(s)	3145, 3612, 4468
AccBSI	CCGCTC	2 cut(s)	193, 1580
AccI	GTMKAC	3 cut(s)	54, 2162, 4897
AciI	CCGC	7 cut(s)	76, 120, 193, 1580, 4345, 5327, 5702
AclI	AACGTT	1 cut(s)	1765
AclWI	GGATC	6 cut(s)	101, 3957, 4364, 4568, 4756, 5254
AcoI	YGGCCR	4 cut(s)	1868, 1947, 4606, 5400
AcuI	CTGAAG	9 cut(s)	875, 882, 992, 1535, 3269, 4056, 4167, 4870, 5981
AdeI	CACNNNGTG	3 cut(s)	2445, 3938, 6143
AfeI	AGCGCT	2 cut(s)	4233, 5874
AfiI	CCNNNNNNNGG	7 cut(s)	192, 235, 3088, 3145, 3283, 3612, 4468
AflII	CTTAAG	2 cut(s)	4691, 5185
AgeI	ACCGGT	1 cut(s)	4860
AhdI	GACNNNNNGTC	3 cut(s)	1479, 1600, 6025
AhlI	ACTAGT	1 cut(s)	1958
AjiI	CACGTC	1 cut(s)	3475
AjnI	CCWGG	7 cut(s)	1921, 2511, 2625, 2748, 3644, 5118, 5685
AloI	GAACNNNNNNTCC	2 cut(s)	3257, 3289
Alw21I	GWGCWC	7 cut(s)	333, 418, 2424, 3429, 3656, 5226, 6320
Alw26I	GTCTC	6 cut(s)	425, 2335, 4459, 4819, 5573, 5721
Alw44I	GTGCAC	1 cut(s)	3425
AlwI	GGATC	6 cut(s)	101, 3957, 4364, 4568, 4756, 5254
AlwNI	CAGNNNCTG	4 cut(s)	1439, 3679, 4468, 5260
Ama87I	CYCGRG	3 cut(s)	353, 4373, 6260
Aor51HI	AGCGCT	2 cut(s)	4233, 5874
ApaLI	GTGCAC	1 cut(s)	3425
ArsI	GACNNNNNNTTYG	4 cut(s)	128, 160, 1160, 1192
AseI	ATTAAT	5 cut(s)	461, 845, 2730, 3756, 5381
AsiGI	ACCGGT	1 cut(s)	4860
Asp700I	GAANNNNTTC	4 cut(s)	709, 2496, 2898, 6237
AspLEI	GCGC	4 cut(s)	523, 4234, 4384, 5875
AsuC2I	CCSGG	1 cut(s)	819
AsuHPI	GGTGA	7 cut(s)	2071, 2180, 2354, 4342, 5099, 5287, 6341
AsuNHI	GCTAGC	1 cut(s)	793
AvaI	CYCGRG	3 cut(s)	353, 4373, 6260
AvaII	GGWCC	7 cut(s)	1171, 2761, 2852, 3136, 3622, 4988, 6151
BaeGI	GKGCMC	2 cut(s)	3429, 3784
BalI	TGGCCA	4 cut(s)	1870, 1949, 4608, 5402
BanII	GRGCYC	1 cut(s)	333
BauI	CACGAG	1 cut(s)	5043
Bbv12I	GWGCWC	7 cut(s)	333, 418, 2424, 3429, 3656, 5226, 6320
BceAI	ACGGC	6 cut(s)	134, 406, 660, 1437, 3559, 5475
BcgI	CGANNNNNNTGC	2 cut(s)	536, 570
BciT130I	CCWGG	7 cut(s)	1923, 2513, 2627, 2750, 3646, 5120, 5687
BciVI	GTATCC	2 cut(s)	5059, 5068
BclI	TGATCA	5 cut(s)	630, 921, 2878, 4974, 5251
BcnI	CCSGG	1 cut(s)	819
BcoDI	GTCTC	6 cut(s)	425, 2335, 4459, 4819, 5573, 5721
BcuI	ACTAGT	1 cut(s)	1958
BfmI	CTRYAG	8 cut(s)	1078, 1989, 2178, 2322, 3960, 4010, 5649, 6084
BfoI	RGCGCY	3 cut(s)	524, 4235, 5876
BfrI	CTTAAG	2 cut(s)	4691, 5185
BfuAI	ACCTGC	1 cut(s)	4438
BfuI	GTATCC	2 cut(s)	5059, 5068
BglII	AGATCT	1 cut(s)	4737
BlpI	GCTNAGC	1 cut(s)	2825
BmcAI	AGTACT	3 cut(s)	302, 359, 1638
Bme1390I	CCNGG	8 cut(s)	819, 1923, 2513, 2627, 2750, 3646, 5120, 5687
Bme18I	GGWCC	7 cut(s)	1171, 2761, 2852, 3136, 3622, 4988, 6151
BmeRI	GACNNNNNGTC	3 cut(s)	1479, 1600, 6025
BmeT110I	CYCGRG	3 cut(s)	353, 4373, 6260
BmgBI	CACGTC	1 cut(s)	3475
BmiI	GGNNCC	6 cut(s)	197, 3174, 3514, 3573, 4865, 4990
BmrFI	CCNGG	8 cut(s)	819, 1923, 2513, 2627, 2750, 3646, 5120, 5687
BmrI	ACTGGG	2 cut(s)	16, 4566
BmtI	GCTAGC	1 cut(s)	797
BmuI	ACTGGG	2 cut(s)	16, 4566
BplI	GAGNNNNNCTC	2 cut(s)	3547, 3579
BpmI	CTGGAG	7 cut(s)	3110, 3159, 3752, 4445, 5768, 5799, 5979
Bpu10I	CCTNAGC	2 cut(s)	1854, 2366
Bpu1102I	GCTNAGC	1 cut(s)	2825
BpuEI	CTTGAG	5 cut(s)	188, 325, 329, 752, 4370
BpuMI	CCSGG	1 cut(s)	819
BsaAI	YACGTR	1 cut(s)	3482
BsaBI	GATNNNNATC	2 cut(s)	1273, 1560
BsaI	GGTCTC	2 cut(s)	425, 5721
BsaJI	CCNNGG	8 cut(s)	1494, 2003, 3520, 4992, 5061, 5118, 5663, 5851
BsaWI	WCCGGW	1 cut(s)	4860
BsaXI	ACNNNNNCTCC	6 cut(s)	799, 829, 3257, 3287, 4629, 4659
Bsc4I	CCNNNNNNNGG	7 cut(s)	192, 235, 3088, 3145, 3283, 3612, 4468
Bse118I	RCCGGY	2 cut(s)	4860, 5094
Bse3DI	GCAATG	5 cut(s)	554, 2262, 2989, 4003, 4347
Bse8I	GATNNNNATC	2 cut(s)	1273, 1560
BseBI	CCWGG	7 cut(s)	1923, 2513, 2627, 2750, 3646, 5120, 5687
BseDI	CCNNGG	8 cut(s)	1494, 2003, 3520, 4992, 5061, 5118, 5663, 5851
BseJI	GATNNNNATC	2 cut(s)	1273, 1560
BseLI	CCNNNNNNNGG	7 cut(s)	192, 235, 3088, 3145, 3283, 3612, 4468
BseMI	GCAATG	5 cut(s)	554, 2262, 2989, 4003, 4347
BseRI	GAGGAG	1 cut(s)	6023
BseSI	GKGCMC	2 cut(s)	3429, 3784
BseYI	CCCAGC	2 cut(s)	1236, 5976
BsgI	GTGCAG	4 cut(s)	537, 563, 3120, 3281
BshTI	ACCGGT	1 cut(s)	4860
BsiHKAI	GWGCWC	7 cut(s)	333, 418, 2424, 3429, 3656, 5226, 6320
BsiHKCI	CYCGRG	3 cut(s)	353, 4373, 6260
BsiSI	CCGG	4 cut(s)	819, 4861, 5095, 5501
BslFI	GGGAC	4 cut(s)	4, 1029, 3326, 3572
BslI	CCNNNNNNNGG	7 cut(s)	192, 235, 3088, 3145, 3283, 3612, 4468
BsmAI	GTCTC	6 cut(s)	425, 2335, 4459, 4819, 5573, 5721
BsmBI	CGTCTC	1 cut(s)	5573
BsmFI	GGGAC	4 cut(s)	4, 1029, 3326, 3572
BsmI	GAATGC	4 cut(s)	1738, 2266, 5400, 6013
Bso31I	GGTCTC	2 cut(s)	425, 5721
BsoBI	CYCGRG	3 cut(s)	353, 4373, 6260
Bsp1286I	GDGCHC	8 cut(s)	333, 418, 2424, 3429, 3656, 3784, 5226, 6320
Bsp1407I	TGTACA	2 cut(s)	387, 5758
Bsp1720I	GCTNAGC	1 cut(s)	2825
BspACI	CCGC	7 cut(s)	76, 120, 193, 1580, 4345, 5327, 5702
BspHI	TCATGA	1 cut(s)	4563
BspLI	GGNNCC	6 cut(s)	197, 3174, 3514, 3573, 4865, 4990
BspMAI	CTGCAG	5 cut(s)	1993, 2326, 4014, 5653, 6088
BspMI	ACCTGC	1 cut(s)	4438
BspOI	GCTAGC	1 cut(s)	797
BspPI	GGATC	6 cut(s)	101, 3957, 4364, 4568, 4756, 5254
BspTI	CTTAAG	2 cut(s)	4691, 5185
BspTNI	GGTCTC	2 cut(s)	425, 5721
BsrBI	CCGCTC	2 cut(s)	193, 1580
BsrDI	GCAATG	5 cut(s)	554, 2262, 2989, 4003, 4347
BsrFI	RCCGGY	2 cut(s)	4860, 5094
BsrGI	TGTACA	2 cut(s)	387, 5758
BssAI	RCCGGY	2 cut(s)	4860, 5094
BssECI	CCNNGG	8 cut(s)	1494, 2003, 3520, 4992, 5061, 5118, 5663, 5851
BssSI	CACGAG	1 cut(s)	5043
BssT1I	CCWWGG	5 cut(s)	1494, 2003, 3520, 4992, 5851
Bst2BI	CACGAG	1 cut(s)	5043
Bst2UI	CCWGG	7 cut(s)	1923, 2513, 2627, 2750, 3646, 5120, 5687
Bst6I	CTCTTC	8 cut(s)	107, 858, 968, 2604, 2889, 3548, 4398, 4882
BstAFI	CTTAAG	2 cut(s)	4691, 5185
BstAPI	GCANNNNNTGC	3 cut(s)	2261, 2951, 4363
BstAUI	TGTACA	2 cut(s)	387, 5758
BstBAI	YACGTR	1 cut(s)	3482
BstEII	GGTNACC	1 cut(s)	5441
BstH2I	RGCGCY	3 cut(s)	524, 4235, 5876
BstHHI	GCGC	4 cut(s)	523, 4234, 4384, 5875
BstMAI	GTCTC	6 cut(s)	425, 2335, 4459, 4819, 5573, 5721
BstNI	CCWGG	7 cut(s)	1923, 2513, 2627, 2750, 3646, 5120, 5687
BstNSI	RCATGY	6 cut(s)	1707, 1899, 3128, 4181, 4538, 5848
BstPI	GGTNACC	1 cut(s)	5441
BstSCI	CCNGG	8 cut(s)	817, 1921, 2511, 2625, 2748, 3644, 5118, 5685
BstSFI	CTRYAG	8 cut(s)	1078, 1989, 2178, 2322, 3960, 4010, 5649, 6084
BstSLI	GKGCMC	2 cut(s)	3429, 3784
BstX2I	RGATCY	4 cut(s)	3949, 4369, 4737, 5246
BstXI	CCANNNNNNTGG	1 cut(s)	1945
BstYI	RGATCY	4 cut(s)	3949, 4369, 4737, 5246
BsuI	GTATCC	2 cut(s)	5059, 5068
BtgZI	GCGATG	1 cut(s)	2330
BtrI	CACGTC	1 cut(s)	3475
BtsI	GCAGTG	4 cut(s)	3108, 3677, 4944, 6148
BveI	ACCTGC	1 cut(s)	4438
CaiI	CAGNNNCTG	4 cut(s)	1439, 3679, 4468, 5260
CciI	TCATGA	1 cut(s)	4563
CfoI	GCGC	4 cut(s)	523, 4234, 4384, 5875
Cfr10I	RCCGGY	2 cut(s)	4860, 5094
CseI	GACGC	4 cut(s)	6, 2053, 3048, 3191
CspAI	ACCGGT	1 cut(s)	4860
DraIII	CACNNNGTG	3 cut(s)	2445, 3938, 6143
DrdI	GACNNNNNNGTC	2 cut(s)	162, 2759
DriI	GACNNNNNGTC	3 cut(s)	1479, 1600, 6025
DseDI	GACNNNNNNGTC	2 cut(s)	162, 2759
EaeI	YGGCCR	4 cut(s)	1868, 1947, 4606, 5400
Eam1104I	CTCTTC	8 cut(s)	107, 858, 968, 2604, 2889, 3548, 4398, 4882
Eam1105I	GACNNNNNGTC	3 cut(s)	1479, 1600, 6025
EarI	CTCTTC	8 cut(s)	107, 858, 968, 2604, 2889, 3548, 4398, 4882
Ecl136II	GAGCTC	1 cut(s)	331
Eco130I	CCWWGG	5 cut(s)	1494, 2003, 3520, 4992, 5851
Eco24I	GRGCYC	1 cut(s)	333
Eco31I	GGTCTC	2 cut(s)	425, 5721
Eco32I	GATATC	6 cut(s)	127, 1271, 2173, 2454, 3700, 3883
Eco47I	GGWCC	7 cut(s)	1171, 2761, 2852, 3136, 3622, 4988, 6151
Eco47III	AGCGCT	2 cut(s)	4233, 5874
Eco53kI	GAGCTC	1 cut(s)	331
Eco57I	CTGAAG	9 cut(s)	875, 882, 992, 1535, 3269, 4056, 4167, 4870, 5981
Eco88I	CYCGRG	3 cut(s)	353, 4373, 6260
Eco91I	GGTNACC	1 cut(s)	5441
EcoICRI	GAGCTC	1 cut(s)	331
EcoO109I	RGGNCCY	1 cut(s)	1171
EcoO65I	GGTNACC	1 cut(s)	5441
EcoRI	GAATTC	2 cut(s)	2917, 3301
EcoRII	CCWGG	7 cut(s)	1921, 2511, 2625, 2748, 3644, 5118, 5685
EcoRV	GATATC	6 cut(s)	127, 1271, 2173, 2454, 3700, 3883
EcoT14I	CCWWGG	5 cut(s)	1494, 2003, 3520, 4992, 5851
EcoT22I	ATGCAT	3 cut(s)	595, 1664, 4536
EcoT38I	GRGCYC	1 cut(s)	333
ErhI	CCWWGG	5 cut(s)	1494, 2003, 3520, 4992, 5851
Esp3I	CGTCTC	1 cut(s)	5573
FaqI	GGGAC	4 cut(s)	4, 1029, 3326, 3572
FauNDI	CATATG	1 cut(s)	3873
FbaI	TGATCA	5 cut(s)	630, 921, 2878, 4974, 5251
FblI	GTMKAC	3 cut(s)	54, 2162, 4897
FriOI	GRGCYC	1 cut(s)	333
GlaI	GCGC	4 cut(s)	522, 4233, 4383, 5874
GsaI	CCCAGC	2 cut(s)	1240, 5980
GsuI	CTGGAG	7 cut(s)	3110, 3159, 3752, 4445, 5768, 5799, 5979
HaeII	RGCGCY	3 cut(s)	524, 4235, 5876
HapII	CCGG	4 cut(s)	819, 4861, 5095, 5501
HgaI	GACGC	4 cut(s)	6, 2053, 3048, 3191
HhaI	GCGC	4 cut(s)	523, 4234, 4384, 5875
Hin6I	GCGC	4 cut(s)	521, 4232, 4382, 5873
HinP1I	GCGC	4 cut(s)	521, 4232, 4382, 5873
HincII	GTYRAC	4 cut(s)	55, 1075, 2689, 5495
HindII	GTYRAC	4 cut(s)	55, 1075, 2689, 5495
HindIII	AAGCTT	3 cut(s)	3221, 3584, 4688
HpaII	CCGG	4 cut(s)	819, 4861, 5095, 5501
HphI	GGTGA	7 cut(s)	2071, 2180, 2354, 4342, 5099, 5287, 6341
Hpy99I	CGWCG	3 cut(s)	70, 191, 1452
HpyCH4IV	ACGT	6 cut(s)	1765, 2433, 2496, 3448, 3474, 3481
HpySE526I	ACGT	6 cut(s)	1765, 2433, 2496, 3448, 3474, 3481
HspAI	GCGC	4 cut(s)	521, 4232, 4382, 5873
KroI	GCCGGC	1 cut(s)	5094
KroNI	GCCGGC	1 cut(s)	5096
Ksp22I	TGATCA	5 cut(s)	630, 921, 2878, 4974, 5251
MaeII	ACGT	6 cut(s)	1765, 2433, 2496, 3448, 3474, 3481
MbiI	CCGCTC	2 cut(s)	193, 1580
MfeI	CAATTG	2 cut(s)	3158, 4062
MflI	RGATCY	4 cut(s)	3949, 4369, 4737, 5246
MhlI	GDGCHC	8 cut(s)	333, 418, 2424, 3429, 3656, 3784, 5226, 6320
MlsI	TGGCCA	4 cut(s)	1870, 1949, 4608, 5402
MluNI	TGGCCA	4 cut(s)	1870, 1949, 4608, 5402
MmeI	TCCRAC	3 cut(s)	1347, 3026, 4389
Mox20I	TGGCCA	4 cut(s)	1870, 1949, 4608, 5402
Mph1103I	ATGCAT	3 cut(s)	595, 1664, 4536
MroNI	GCCGGC	1 cut(s)	5094
MroXI	GAANNNNTTC	4 cut(s)	709, 2496, 2898, 6237
MscI	TGGCCA	4 cut(s)	1870, 1949, 4608, 5402
MslI	CAYNNNNRTG	3 cut(s)	1755, 1943, 4731
Msp20I	TGGCCA	4 cut(s)	1870, 1949, 4608, 5402
MspA1I	CMGCKG	1 cut(s)	884
MspCI	CTTAAG	2 cut(s)	4691, 5185
MspI	CCGG	4 cut(s)	819, 4861, 5095, 5501
MspR9I	CCNGG	8 cut(s)	819, 1923, 2513, 2627, 2750, 3646, 5120, 5687
MunI	CAATTG	2 cut(s)	3158, 4062
Mva1269I	GAATGC	4 cut(s)	1738, 2266, 5400, 6013
MvaI	CCWGG	7 cut(s)	1923, 2513, 2627, 2750, 3646, 5120, 5687
NaeI	GCCGGC	1 cut(s)	5096
NciI	CCSGG	1 cut(s)	819
NdeI	CATATG	1 cut(s)	3873
NgoMIV	GCCGGC	1 cut(s)	5094
NheI	GCTAGC	1 cut(s)	793
NlaIV	GGNNCC	6 cut(s)	197, 3174, 3514, 3573, 4865, 4990
NsiI	ATGCAT	3 cut(s)	595, 1664, 4536
NspI	RCATGY	6 cut(s)	1707, 1899, 3128, 4181, 4538, 5848
PacI	TTAATTAA	1 cut(s)	465
PaeI	GCATGC	3 cut(s)	1899, 4181, 4538
PaeR7I	CTCGAG	2 cut(s)	353, 6260
PagI	TCATGA	1 cut(s)	4563
PcsI	WCGNNNNNNNCGW	1 cut(s)	6267
PctI	GAATGC	4 cut(s)	1738, 2266, 5400, 6013
PdiI	GCCGGC	1 cut(s)	5096
PdmI	GAANNNNTTC	4 cut(s)	709, 2496, 2898, 6237
PflFI	GACNNNGTC	3 cut(s)	3042, 4676, 6149
PflMI	CCANNNNNTGG	3 cut(s)	3145, 3612, 4468
PfoI	TCCNGGA	2 cut(s)	817, 2748
PinAI	ACCGGT	1 cut(s)	4860
Ppu21I	YACGTR	1 cut(s)	3482
PpuMI	RGGWCCY	1 cut(s)	1171
PshBI	ATTAAT	5 cut(s)	461, 845, 2730, 3756, 5381
Psp124BI	GAGCTC	1 cut(s)	333
Psp1406I	AACGTT	1 cut(s)	1765
Psp5II	RGGWCCY	1 cut(s)	1171
Psp6I	CCWGG	7 cut(s)	1921, 2511, 2625, 2748, 3644, 5118, 5685
PspEI	GGTNACC	1 cut(s)	5441
PspFI	CCCAGC	2 cut(s)	1236, 5976
PspGI	CCWGG	7 cut(s)	1921, 2511, 2625, 2748, 3644, 5118, 5685
PspN4I	GGNNCC	6 cut(s)	197, 3174, 3514, 3573, 4865, 4990
PspPPI	RGGWCCY	1 cut(s)	1171
PspXI	VCTCGAGB	1 cut(s)	6260
PsrI	GAACNNNNNNTAC	2 cut(s)	1899, 1931
PstI	CTGCAG	5 cut(s)	1993, 2326, 4014, 5653, 6088
PstNI	CAGNNNCTG	4 cut(s)	1439, 3679, 4468, 5260
PsuI	RGATCY	4 cut(s)	3949, 4369, 4737, 5246
PsyI	GACNNNGTC	3 cut(s)	3042, 4676, 6149
PvuII	CAGCTG	1 cut(s)	884
RseI	CAYNNNNRTG	3 cut(s)	1755, 1943, 4731
SacI	GAGCTC	1 cut(s)	333
SalI	GTCGAC	1 cut(s)	53
ScaI	AGTACT	3 cut(s)	302, 359, 1638
ScrFI	CCNGG	8 cut(s)	819, 1923, 2513, 2627, 2750, 3646, 5120, 5687
SduI	GDGCHC	8 cut(s)	333, 418, 2424, 3429, 3656, 3784, 5226, 6320
SfcI	CTRYAG	8 cut(s)	1078, 1989, 2178, 2322, 3960, 4010, 5649, 6084
Sfr274I	CTCGAG	2 cut(s)	353, 6260
SinI	GGWCC	7 cut(s)	1171, 2761, 2852, 3136, 3622, 4988, 6151
SlaI	CTCGAG	2 cut(s)	353, 6260
SmiMI	CAYNNNNRTG	3 cut(s)	1755, 1943, 4731
SmlI	CTYRAG	9 cut(s)	167, 304, 344, 353, 731, 4385, 4691, 5185, 6260
SmoI	CTYRAG	9 cut(s)	167, 304, 344, 353, 731, 4385, 4691, 5185, 6260
SpeI	ACTAGT	1 cut(s)	1958
SphI	GCATGC	3 cut(s)	1899, 4181, 4538
SsiI	CCGC	7 cut(s)	76, 120, 193, 1580, 4345, 5327, 5702
SspI	AATATT	4 cut(s)	2269, 2863, 4253, 6303
SstI	GAGCTC	1 cut(s)	333
StyD4I	CCNGG	8 cut(s)	817, 1921, 2511, 2625, 2748, 3644, 5118, 5685
StyI	CCWWGG	5 cut(s)	1494, 2003, 3520, 4992, 5851
TaiI	ACGT	6 cut(s)	1768, 2436, 2499, 3451, 3477, 3484
TatI	WGTACW	7 cut(s)	300, 357, 387, 727, 1636, 4027, 5758
TauI	GCSGC	3 cut(s)	79, 122, 1583
TspGWI	ACGGA	8 cut(s)	758, 1042, 2156, 3444, 3501, 4121, 6015, 6143
Tth111I	GACNNNGTC	3 cut(s)	3042, 4676, 6149
Van91I	CCANNNNNTGG	3 cut(s)	3145, 3612, 4468
Vha464I	CTTAAG	2 cut(s)	4691, 5185
VneI	GTGCAC	1 cut(s)	3425
VpaK11BI	GGWCC	7 cut(s)	1171, 2761, 2852, 3136, 3622, 4988, 6151
VspI	ATTAAT	5 cut(s)	461, 845, 2730, 3756, 5381
XbaI	TCTAGA	2 cut(s)	4843, 6004
XceI	RCATGY	6 cut(s)	1707, 1899, 3128, 4181, 4538, 5848
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1960, 3239
XhoI	CTCGAG	2 cut(s)	353, 6260
XmiI	GTMKAC	3 cut(s)	54, 2162, 4897
XmnI	GAANNNNTTC	4 cut(s)	709, 2496, 2898, 6237
ZrmI	AGTACT	3 cut(s)	302, 359, 1638
Zsp2I	ATGCAT	3 cut(s)	595, 1664, 4536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.